Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Reverse (-)

9737652 .. 9741035

Gene Structure 3384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1133900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGATGAGGAAATCAGGTAGCACCATTATCAAACATCTCAAATCATCATCGTTCGGTCTCACCTCTTGGACTCCAAAATCTCCACTTCCACTTGCTCCTCCTTCATTTCCTCAAATTCTCCAAATCCCGGCAGCCGGAGATTTCAGTAACTTCTGCTCTTGCCGGTTTGAATCCGTCAATGCAGAAAAGACGCCGGATTCGGATACGACTGATCGCAATCACGATCAGGCTTTAGTGTTTCCCGAAGGAAAGGTCAAGTTCACTCCTGAAATGAGGTTCATATCCGAGACTGCTGAGGAGCGGGAATGCTGTTATCGCATCCTTGATGACAATGGGAACCAAATTTTGTCCAGCAACTATGTAGAGGTCAGTAAGGAAGTTGCTGTGAAAATGTATACCAACATGGTTACTCTTCAGACCATGGACACCATTTTCTATGAAGCACAAAGGCAAGGAAGGATTTCGTTCTATTTGACCACAGTTGGTGAAGAGGCTACCAATATTGCATCTGCGGCAGCACTCACCATTGACGACATTGTCTTTCCCCAGTACAGGGAGGCAGGAGTGCTATTGTGGCGTGGTTTCACTCTACAAGAATTTGCAAACCAGTGTTTCAGTAACAAAGCTGATTATGGGAAAGGCAGGCAGATGCCGATCCATTATGGATCTAACAAGCTCAATTACGTAACTATAGCATCAACCGTGGCCACACAACTTCCACAGGCTGTTGGTGCTGCATATTCTTTAAAGATGGACAGGAAAGATGCATGTGTGGTCGCGTATGTTGGTGATGGTGGCACAAGCGAGGGTGATTTCCATGCTGCCTTGAATTTTGCGGCTGTTAAGGAGGCTCCGGTTATATTCTTTTGTCGGAACAATGGATGGGCTATCAGTACACCTACATCAGACCAGTTTCGGAGTGATGGCGTTGTTGTCAAAGGCCGGGCTTATGGAATTCGAAGCATCCGAGTAGATGGTAATGATGCACTTGCTGTGTACGGTGCAGTTCATGCTGCCCGTGACATGGCAATCAGAGAACAGAGACCAATCTTAATTGAGGCATTAACATATCGAGTAGGACACCATTCCACTTCAGATGATTCGACAAAGTATCGTCCAGTCGAAGAGATTGAATGGTGGAAAATGGAACGAGACCCTGTATCTCGATTTAGAAAGTGGATGGAAAACAATAGTTGGTGGAGTGATAAGCAAGAGTTAGAGGCCAGAAACAGTGCGAGAAAGCAGATATTACATGCAATCCAAGAAGCAGAGAAAGTTGACAAACCTCCAATTGCTGACATTTTCACAGATGTATATGACTCTCCCTCTTCCGATCTCCGCGAGCAGGAGAAATTGCTCAGAGATACAATTCAAAGACACCCCTGCGATTACCCATCCGACTTTCCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

471

Amino Acids

52.98

Weight (kDa)

5.72

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	134 - 430	1.9e-95	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
AccBSI	CCGCTC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	2 cut(s)	779, 1341
AciI	CCGC	4 cut(s)	301, 512, 836, 1339
AclWI	GGATC	2 cut(s)	649, 673
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	5 cut(s)	114, 342, 596, 829, 954
AcuI	CTGAAG	2 cut(s)	398, 1077
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	3 cut(s)	551, 895, 998
AfiI	CCNNNNNNNGG	6 cut(s)	127, 134, 552, 553, 1024, 1345
AgsI	TTSAA	4 cut(s)	170, 829, 1133, 1373
AluBI	AGCT	2 cut(s)	626, 676
AluI	AGCT	2 cut(s)	626, 676
Alw26I	GTCTC	4 cut(s)	62, 281, 1036, 1146
AlwI	GGATC	2 cut(s)	649, 673
AoxI	GGCC	3 cut(s)	705, 940, 1221
ApeKI	GCWGC	5 cut(s)	131, 515, 734, 821, 1013
ApoI	RAATTY	5 cut(s)	114, 342, 596, 829, 954
ArsI	GACNNNNNNTTYG	4 cut(s)	181, 213, 237, 269
Asp700I	GAANNNNTTC	1 cut(s)	460
AsuC2I	CCSGG	2 cut(s)	128, 944
AsuHPI	GGTGA	5 cut(s)	52, 497, 514, 800, 821
AsuII	TTCGAA	1 cut(s)	958
BalI	TGGCCA	1 cut(s)	707
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	5 cut(s)	143, 527, 721, 808, 1000
BccI	CCATC	7 cut(s)	745, 785, 876, 917, 968, 1174, 1402
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	2 cut(s)	128, 944
BcoDI	GTCTC	4 cut(s)	62, 281, 1036, 1146
BfmI	CTRYAG	1 cut(s)	690
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	7 cut(s)	132, 513, 516, 735, 822, 837, 1014
BlsI	GCNGC	7 cut(s)	133, 514, 517, 736, 823, 838, 1015
Bme1390I	CCNGG	2 cut(s)	128, 944
BmiI	GGNNCC	2 cut(s)	338, 852
BmrFI	CCNGG	2 cut(s)	128, 944
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	7 cut(s)	327, 515, 639, 704, 754, 972, 973
BmuI	ACTGGG	1 cut(s)	541
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	958
BpuMI	CCSGG	2 cut(s)	128, 944
BsaAI	YACGTR	1 cut(s)	685
BsaBI	GATNNNNATC	2 cut(s)	216, 653
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	3 cut(s)	62, 1036, 1146
BsaJI	CCNNGG	2 cut(s)	420, 702
BsaWI	WCCGGW	1 cut(s)	853
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 134, 552, 553, 1024, 1345
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	4 cut(s)	547, 607, 910, 1118
Bse8I	GATNNNNATC	2 cut(s)	216, 653
BseDI	CCNNGG	2 cut(s)	420, 702
BseGI	GGATG	5 cut(s)	318, 887, 963, 1185, 1394
BseJI	GATNNNNATC	2 cut(s)	216, 653
BseLI	CCNNNNNNNGG	6 cut(s)	127, 134, 552, 553, 1024, 1345
BseMII	CTCAG	2 cut(s)	285, 1372
BseNI	ACTGG	4 cut(s)	547, 607, 910, 1118
BseRI	GAGGAG	2 cut(s)	87, 311
BseXI	GCAGC	5 cut(s)	143, 527, 721, 808, 1000
BsgI	GTGCAG	1 cut(s)	1023
Bsh1236I	CGCG	2 cut(s)	779, 1341
BshFI	GGCC	3 cut(s)	707, 942, 1223
BsiSI	CCGG	6 cut(s)	128, 135, 163, 194, 854, 943
BslI	CCNNNNNNNGG	6 cut(s)	127, 134, 552, 553, 1024, 1345
BsmAI	GTCTC	4 cut(s)	62, 281, 1036, 1146
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	3 cut(s)	707, 942, 1223
Bso31I	GGTCTC	3 cut(s)	62, 1036, 1146
Bsp119I	TTCGAA	1 cut(s)	958
Bsp143I	GATC	5 cut(s)	211, 223, 654, 665, 1333
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	4 cut(s)	301, 512, 836, 1339
BspANI	GGCC	3 cut(s)	707, 942, 1223
BspCNI	CTCAG	2 cut(s)	286, 1371
BspFNI	CGCG	2 cut(s)	779, 1341
BspLI	GGNNCC	2 cut(s)	338, 852
BspPI	GGATC	2 cut(s)	649, 673
BspT104I	TTCGAA	1 cut(s)	958
BspTNI	GGTCTC	3 cut(s)	62, 1036, 1146
BsrBI	CCGCTC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	4 cut(s)	547, 607, 910, 1118
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	420, 702
BssMI	GATC	5 cut(s)	211, 223, 654, 665, 1333
BssNAI	GTATAC	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	420
Bst1107I	GTATAC	1 cut(s)	396
Bst4CI	ACNGT	4 cut(s)	481, 703, 1001, 1232
Bst6I	CTCTTC	4 cut(s)	417, 483, 1119, 1333
BstACI	GRCGYC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	1010
BstBAI	YACGTR	1 cut(s)	685
BstBI	TTCGAA	1 cut(s)	958
BstC8I	GCNNGC	2 cut(s)	644, 1343
BstDEI	CTNAG	2 cut(s)	294, 1358
BstDSI	CCRYGG	2 cut(s)	420, 702
BstF5I	GGATG	5 cut(s)	318, 887, 963, 1185, 1394
BstFNI	CGCG	2 cut(s)	779, 1341
BstKTI	GATC	5 cut(s)	214, 226, 657, 668, 1336
BstMAI	GTCTC	4 cut(s)	62, 281, 1036, 1146
BstMBI	GATC	5 cut(s)	211, 223, 654, 665, 1333
BstMWI	GCNNNNNNNGC	5 cut(s)	315, 512, 574, 731, 1010
BstNSI	RCATGY	2 cut(s)	771, 1256
BstSCI	CCNGG	2 cut(s)	126, 942
BstSFI	CTRYAG	1 cut(s)	690
BstSNI	TACGTA	1 cut(s)	685
BstUI	CGCG	2 cut(s)	779, 1341
BstV1I	GCAGC	5 cut(s)	143, 527, 721, 808, 1000
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BstZ17I	GTATAC	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	707, 942, 1223
BtgI	CCRYGG	2 cut(s)	420, 702
BtsCI	GGATG	5 cut(s)	318, 887, 963, 1185, 1394
BtsIMutI	CAGTG	2 cut(s)	614, 1237
Cac8I	GCNNGC	2 cut(s)	644, 1343
Cfr10I	RCCGGY	1 cut(s)	162
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	3 cut(s)	550, 894, 997
CviAII	CATG	7 cut(s)	403, 421, 768, 818, 1010, 1024, 1253
CviQI	GTAC	3 cut(s)	550, 894, 997
DdeI	CTNAG	2 cut(s)	294, 1358
DpnI	GATC	5 cut(s)	213, 225, 656, 667, 1335
DpnII	GATC	5 cut(s)	211, 223, 654, 665, 1333
DraI	TTTAAA	1 cut(s)	747
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	1 cut(s)	705
Eam1104I	CTCTTC	4 cut(s)	417, 483, 1119, 1333
EarI	CTCTTC	4 cut(s)	417, 483, 1119, 1333
Eco105I	TACGTA	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	420
Eco31I	GGTCTC	3 cut(s)	62, 1036, 1146
Eco57I	CTGAAG	2 cut(s)	398, 1077
EcoRI	GAATTC	1 cut(s)	954
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	7 cut(s)	406, 424, 771, 821, 1013, 1027, 1256
FatI	CATG	7 cut(s)	402, 420, 767, 817, 1009, 1023, 1252
FauI	CCCGC	1 cut(s)	294
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	7 cut(s)	132, 513, 516, 735, 822, 837, 1014
FokI	GGATG	5 cut(s)	305, 894, 950, 1192, 1381
Fsp4HI	GCNGC	7 cut(s)	132, 513, 516, 735, 822, 837, 1014
GluI	GCNGC	7 cut(s)	132, 513, 516, 735, 822, 837, 1014
HaeIII	GGCC	3 cut(s)	707, 942, 1223
HapII	CCGG	6 cut(s)	128, 135, 163, 194, 854, 943
HgaI	GACGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	7 cut(s)	406, 424, 771, 821, 1013, 1027, 1256
HincII	GTYRAC	1 cut(s)	1279
HindII	GTYRAC	1 cut(s)	1279
HinfI	GANTC	5 cut(s)	70, 170, 197, 1100, 1319
HpaII	CCGG	6 cut(s)	128, 135, 163, 194, 854, 943
HphI	GGTGA	5 cut(s)	52, 497, 514, 800, 821
Hpy166II	GTNNAC	5 cut(s)	261, 396, 896, 997, 1279
Hpy188III	TCNNGA	4 cut(s)	221, 242, 266, 1164
Hpy8I	GTNNAC	5 cut(s)	261, 396, 896, 997, 1279
HpyAV	CCTTC	3 cut(s)	111, 239, 450
HpyCH4III	ACNGT	4 cut(s)	481, 703, 1001, 1232
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	8 cut(s)	182, 506, 602, 737, 767, 986, 1004, 1256
HpyF10VI	GCNNNNNNNGC	5 cut(s)	315, 512, 574, 731, 1010
HpyF3I	CTNAG	2 cut(s)	294, 1358
HpySE526I	ACGT	1 cut(s)	684
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	7 cut(s)	406, 424, 771, 821, 1013, 1027, 1256
Kzo9I	GATC	5 cut(s)	211, 223, 654, 665, 1333
LmnI	GCTCC	3 cut(s)	100, 298, 856
Lsp1109I	GCAGC	5 cut(s)	143, 527, 721, 808, 1000
LweI	GCATC	7 cut(s)	327, 515, 639, 704, 754, 972, 973
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	5 cut(s)	146, 406, 617, 685, 1019
MalI	GATC	5 cut(s)	213, 225, 656, 667, 1335
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	5 cut(s)	211, 223, 654, 665, 1333
MboII	GAAGA	4 cut(s)	404, 500, 1136, 1320
MfeI	CAATTG	1 cut(s)	1290
MflI	RGATCY	1 cut(s)	665
MlsI	TGGCCA	1 cut(s)	707
MluNI	TGGCCA	1 cut(s)	707
MlyI	GAGTC	2 cut(s)	64, 1313
MmeI	TCCRAC	1 cut(s)	851
Mox20I	TGGCCA	1 cut(s)	707
Mph1103I	ATGCAT	1 cut(s)	769
MroXI	GAANNNNTTC	1 cut(s)	460
MscI	TGGCCA	1 cut(s)	707
MseI	TTAA	4 cut(s)	746, 843, 1052, 1064
Msp20I	TGGCCA	1 cut(s)	707
MspI	CCGG	6 cut(s)	128, 135, 163, 194, 854, 943
MspR9I	CCNGG	2 cut(s)	128, 944
MunI	CAATTG	1 cut(s)	1290
Mva1269I	GAATGC	1 cut(s)	311
MvnI	CGCG	2 cut(s)	779, 1341
MwoI	GCNNNNNNNGC	5 cut(s)	315, 512, 574, 731, 1010
NciI	CCSGG	2 cut(s)	128, 944
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	5 cut(s)	211, 223, 654, 665, 1333
NlaIII	CATG	7 cut(s)	406, 424, 771, 821, 1013, 1027, 1256
NlaIV	GGNNCC	2 cut(s)	338, 852
NmuCI	GTSAC	1 cut(s)	1019
NsiI	ATGCAT	1 cut(s)	769
NspI	RCATGY	2 cut(s)	771, 1256
NspV	TTCGAA	1 cut(s)	958
PcsI	WCGNNNNNNNCGW	1 cut(s)	964
PctI	GAATGC	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	3 cut(s)	170, 197, 1100
PflFI	GACNNNGTC	1 cut(s)	536
PkrI	GCNGC	7 cut(s)	133, 514, 517, 736, 823, 838, 1015
PleI	GAGTC	2 cut(s)	64, 1313
PpsI	GAGTC	2 cut(s)	64, 1313
Ppu21I	YACGTR	1 cut(s)	685
PspN4I	GGNNCC	2 cut(s)	338, 852
PsuI	RGATCY	1 cut(s)	665
PsyI	GACNNNGTC	1 cut(s)	536
RsaI	GTAC	3 cut(s)	551, 895, 998
RsaNI	GTAC	3 cut(s)	550, 894, 997
SaqAI	TTAA	4 cut(s)	746, 843, 1052, 1064
SatI	GCNGC	7 cut(s)	132, 513, 516, 735, 822, 837, 1014
Sau3AI	GATC	5 cut(s)	211, 223, 654, 665, 1333
SchI	GAGTC	2 cut(s)	64, 1313
ScrFI	CCNGG	2 cut(s)	128, 944
SfaNI	GCATC	7 cut(s)	327, 515, 639, 704, 754, 972, 973
SfcI	CTRYAG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	958
SnaBI	TACGTA	1 cut(s)	685
SsiI	CCGC	4 cut(s)	301, 512, 836, 1339
SspI	AATATT	1 cut(s)	502
StyD4I	CCNGG	2 cut(s)	126, 942
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	4 cut(s)	481, 703, 1001, 1232
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	5 cut(s)	958, 1072, 1103, 1122, 1165
TaqII	GACCGA	1 cut(s)	44
TatI	WGTACW	2 cut(s)	549, 893
TauI	GCSGC	2 cut(s)	515, 839
TfiI	GAWTC	3 cut(s)	170, 197, 1100
Tru1I	TTAA	4 cut(s)	746, 843, 1052, 1064
Tru9I	TTAA	4 cut(s)	746, 843, 1052, 1064
TscAI	CASTG	2 cut(s)	614, 1237
TseFI	GTSAC	1 cut(s)	1019
TseI	GCWGC	5 cut(s)	131, 515, 734, 821, 1013
Tsp45I	GTSAC	1 cut(s)	1019
TspDTI	ATGAA	4 cut(s)	93, 268, 453, 998
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	614, 1237
Tth111I	GACNNNGTC	1 cut(s)	536
XapI	RAATTY	5 cut(s)	114, 342, 596, 829, 954
XceI	RCATGY	2 cut(s)	771, 1256
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	460
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.