Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Reverse (-)

34600817 .. 34603566

Gene Structure 2750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49415

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTTTTGGCAGGTTTTGGATTTACCAGATGGGAAGGTCAAATTTACTCCTGAAATGAGGTTCATATCTGAGTCGACTACGGAGCGTGAGTCCTGTTATCGGGTCCTTGATGACAATGGGAAGAAAATTATGTCCAGCAACTATGCTGAGGTCAGCCGGGAAGTTGCTGTAAAAATGTACACAGACATGGTGATGCTTCAAACTATGGACACCATTTTCTATGAAGCACAGAGGCAAGGAAGAATTTCCTTTTATCTGACTACAGTTGGTGAAGAAGCCATCAATATTGCATCTGCTGCAGCACTCACCTTTGATGACATTGTCCTTCCTCAGTACAGGGAGCCAGGAGTTTTAATATGGCGCGGTTTCACTGCACAAGAATTTGCAAACCAGTGTTTCAGTAACAAAGCTGATTATGGGAAAGGCAGACAGATGCCAATCCATTATGGGTCTAACAAGCACAATTACATCACTGTATCATCACCCATAGCTACACAACTTCCACAGGCTGTTGGTGTTGCTTATTCTCTAAAAATGGACAGAAAAGATGCATGTGTGGTCACATATATTGGGGAAGGTGGCACAAGTGAGGGTGATTTCCATTCTGCTCTAAATTTTGCGGCTGTTACGGAGGCTCCAGTCGTATTCATTTGTCGGAACAACGGATGGGCTATCAGTACACCTACTTCAGACCAGTTTCGGAGTGATGGTGTTGTTGTAAAAGGTCGGGCTTATGGAATCCGAAGTATCCGAGTAGATGGGAATGATGCACTTGCCATGTATAGTGCAGTTTACGCTGCACGCGAAATGGCAATCAGTGAACAGAGACCAATCTTAATAGAGGCATTAACATATCGAGTTGGACACCATTCCACATCAGATGATTCAACCAAGTATCGGCCAGTTGATGAGATTGAACGGTGGAAAGTGGAACGAGACCCAGTAACTAGATTTAGAAAATGGATTGAAAGAAATGGTTGGTGGAGTGGTGAGGCAGAGATAGAGGCTAGAAACAGTGTGAGAAAGCAGATGTTACATGCAATCCAGGAAACTGAGAAAGTTGAAAAGCCACCAGTTGCTGACATGTTCACTGATGTATACGACTGTCCTCCTTCCAATCTTGTTGAGCAGGAGAAACGGCTAAGAGAGACAATTAAGAGACACCCCCAGGATTACCCATCTGATGTTCCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

398

Amino Acids

45.26

Weight (kDa)

5.66

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	62 - 358	3.1e-93	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	74, 1098
AccII	CGCG	2 cut(s)	363, 804
AciI	CCGC	2 cut(s)	363, 620
AcoI	YGGCCR	1 cut(s)	899
AcsI	RAATTY	4 cut(s)	41, 243, 380, 613
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	3 cut(s)	179, 335, 679
AfiI	CCNNNNNNNGG	2 cut(s)	99, 897
AflIII	ACRYGT	1 cut(s)	1083
AgsI	TTSAA	5 cut(s)	200, 888, 917, 968, 1064
AjnI	CCWGG	3 cut(s)	343, 1044, 1167
AluBI	AGCT	2 cut(s)	410, 491
AluI	AGCT	2 cut(s)	410, 491
Alw26I	GTCTC	4 cut(s)	820, 930, 1142, 1153
AlwNI	CAGNNNCTG	1 cut(s)	1079
AoxI	GGCC	1 cut(s)	899
ApeKI	GCWGC	3 cut(s)	296, 299, 797
ApoI	RAATTY	4 cut(s)	41, 243, 380, 613
Asp700I	GAANNNNTTC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	6 cut(s)	202, 281, 298, 474, 605, 1001
AvaII	GGWCC	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	670, 702
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	283, 311, 784
BccI	CCATC	6 cut(s)	23, 287, 660, 701, 752, 1186
BceAI	ACGGC	1 cut(s)	1154
BciT130I	CCWGG	3 cut(s)	345, 1046, 1169
BciVI	GTATCC	1 cut(s)	758
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	4 cut(s)	820, 930, 1142, 1153
BfaI	CTAG	2 cut(s)	948, 1008
BfmI	CTRYAG	2 cut(s)	261, 297
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	4 cut(s)	297, 300, 621, 798
BlsI	GCNGC	4 cut(s)	298, 301, 622, 799
Bme1390I	CCNGG	4 cut(s)	158, 345, 1046, 1169
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	3 cut(s)	104, 342, 636
BmrFI	CCNGG	4 cut(s)	158, 345, 1046, 1169
BmrI	ACTGGG	1 cut(s)	935
BmsI	GCATC	5 cut(s)	183, 299, 423, 538, 757
BmuI	ACTGGG	1 cut(s)	935
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	437
BsaI	GGTCTC	2 cut(s)	820, 930
BsaJI	CCNNGG	1 cut(s)	1167
BsaXI	ACNNNNNCTCC	6 cut(s)	74, 104, 619, 649, 694, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 897
Bse1I	ACTGG	6 cut(s)	391, 638, 694, 902, 941, 1073
Bse8I	GATNNNNATC	1 cut(s)	437
BseBI	CCWGG	3 cut(s)	345, 1046, 1169
BseDI	CCNNGG	1 cut(s)	1167
BseGI	GGATG	1 cut(s)	671
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	2 cut(s)	99, 897
BseMII	CTCAG	4 cut(s)	60, 138, 344, 1044
BseNI	ACTGG	6 cut(s)	391, 638, 694, 902, 941, 1073
BseXI	GCAGC	3 cut(s)	283, 311, 784
BsgI	GTGCAG	3 cut(s)	357, 783, 807
Bsh1236I	CGCG	2 cut(s)	363, 804
BshFI	GGCC	1 cut(s)	901
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	99, 897
BsmAI	GTCTC	4 cut(s)	820, 930, 1142, 1153
BsnI	GGCC	1 cut(s)	901
Bso31I	GGTCTC	2 cut(s)	820, 930
Bsp1407I	TGTACA	1 cut(s)	177
BspACI	CCGC	2 cut(s)	363, 620
BspANI	GGCC	1 cut(s)	901
BspCNI	CTCAG	4 cut(s)	61, 139, 343, 1045
BspFNI	CGCG	2 cut(s)	363, 804
BspLI	GGNNCC	3 cut(s)	104, 342, 636
BspMAI	CTGCAG	1 cut(s)	301
BspTNI	GGTCTC	2 cut(s)	820, 930
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	6 cut(s)	391, 638, 694, 902, 941, 1073
BssECI	CCNNGG	1 cut(s)	1167
BssNAI	GTATAC	1 cut(s)	1099
Bst1107I	GTATAC	1 cut(s)	1099
Bst2UI	CCWGG	3 cut(s)	345, 1046, 1169
Bst4CI	ACNGT	5 cut(s)	265, 475, 921, 1016, 1106
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	802
BstDEI	CTNAG	5 cut(s)	69, 147, 330, 1053, 1142
BstF5I	GGATG	1 cut(s)	671
BstFNI	CGCG	2 cut(s)	363, 804
BstHHI	GCGC	1 cut(s)	363
BstMAI	GTCTC	4 cut(s)	820, 930, 1142, 1153
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 794
BstNI	CCWGG	3 cut(s)	345, 1046, 1169
BstNSI	RCATGY	3 cut(s)	555, 1040, 1087
BstSCI	CCNGG	4 cut(s)	156, 343, 1044, 1167
BstSFI	CTRYAG	2 cut(s)	261, 297
BstUI	CGCG	2 cut(s)	363, 804
BstV1I	GCAGC	3 cut(s)	283, 311, 784
BstZ17I	GTATAC	1 cut(s)	1099
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	901
BtsCI	GGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	6 cut(s)	369, 398, 471, 823, 1021, 1089
Cac8I	GCNNGC	1 cut(s)	802
CaiI	CAGNNNCTG	1 cut(s)	1079
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	3 cut(s)	178, 334, 678
CviAII	CATG	5 cut(s)	187, 552, 778, 1037, 1084
CviQI	GTAC	3 cut(s)	178, 334, 678
DdeI	CTNAG	5 cut(s)	69, 147, 330, 1053, 1142
EaeI	YGGCCR	1 cut(s)	899
Eco31I	GGTCTC	2 cut(s)	820, 930
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	3 cut(s)	343, 1044, 1167
EcoT22I	ATGCAT	1 cut(s)	553
FaeI	CATG	5 cut(s)	190, 555, 781, 1040, 1087
FatI	CATG	5 cut(s)	186, 551, 777, 1036, 1083
FblI	GTMKAC	2 cut(s)	74, 1098
Fnu4HI	GCNGC	4 cut(s)	297, 300, 621, 798
FokI	GGATG	1 cut(s)	678
Fsp4HI	GCNGC	4 cut(s)	297, 300, 621, 798
FspBI	CTAG	2 cut(s)	948, 1008
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	4 cut(s)	297, 300, 621, 798
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	901
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	190, 555, 781, 1040, 1087
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	4 cut(s)	71, 89, 738, 884
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	6 cut(s)	202, 281, 298, 474, 605, 1001
Hpy166II	GTNNAC	7 cut(s)	75, 180, 680, 793, 821, 1089, 1099
Hpy188I	TCNGA	9 cut(s)	70, 258, 657, 691, 702, 743, 752, 880, 1183
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	7 cut(s)	75, 180, 680, 793, 821, 1089, 1099
HpyAV	CCTTC	4 cut(s)	28, 335, 569, 1122
HpyCH4III	ACNGT	5 cut(s)	265, 475, 921, 1016, 1106
HpyCH4V	TGCA	9 cut(s)	290, 299, 374, 386, 551, 770, 788, 800, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 794
HpyF3I	CTNAG	5 cut(s)	69, 147, 330, 1053, 1142
Hsp92II	CATG	5 cut(s)	190, 555, 781, 1040, 1087
HspAI	GCGC	1 cut(s)	361
LmnI	GCTCC	3 cut(s)	82, 340, 640
Lsp1109I	GCAGC	3 cut(s)	283, 311, 784
LweI	GCATC	5 cut(s)	183, 299, 423, 538, 757
MaeI	CTAG	2 cut(s)	948, 1008
MaeIII	GTNAC	5 cut(s)	401, 559, 625, 943, 1032
MboII	GAAGA	3 cut(s)	133, 252, 284
MluCI	AATT	7 cut(s)	41, 126, 243, 380, 463, 613, 1152
MlyI	GAGTC	2 cut(s)	80, 98
MmeI	TCCRAC	2 cut(s)	635, 841
Mph1103I	ATGCAT	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	244
MseI	TTAA	4 cut(s)	353, 836, 848, 1155
MslI	CAYNNNNRTG	2 cut(s)	185, 191
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	4 cut(s)	158, 345, 1046, 1169
MvaI	CCWGG	3 cut(s)	345, 1046, 1169
MvnI	CGCG	2 cut(s)	363, 804
MwoI	GCNNNNNNNGC	2 cut(s)	296, 794
NciI	CCSGG	1 cut(s)	158
NlaIII	CATG	5 cut(s)	190, 555, 781, 1040, 1087
NlaIV	GGNNCC	3 cut(s)	104, 342, 636
NmuCI	GTSAC	1 cut(s)	559
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	3 cut(s)	555, 1040, 1087
PciI	ACATGT	1 cut(s)	1083
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	738, 884
PflFI	GACNNNGTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	1044
PkrI	GCNGC	4 cut(s)	298, 301, 622, 799
PleI	GAGTC	2 cut(s)	79, 97
PpsI	GAGTC	2 cut(s)	79, 97
PpuMI	RGGWCCY	1 cut(s)	103
PscI	ACATGT	1 cut(s)	1083
Psp5II	RGGWCCY	1 cut(s)	103
Psp6I	CCWGG	3 cut(s)	343, 1044, 1167
PspGI	CCWGG	3 cut(s)	343, 1044, 1167
PspN4I	GGNNCC	3 cut(s)	104, 342, 636
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	1079
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	3 cut(s)	179, 335, 679
RsaNI	GTAC	3 cut(s)	178, 334, 678
RseI	CAYNNNNRTG	2 cut(s)	185, 191
SalI	GTCGAC	1 cut(s)	73
SaqAI	TTAA	4 cut(s)	353, 836, 848, 1155
SatI	GCNGC	4 cut(s)	297, 300, 621, 798
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	80, 98
ScrFI	CCNGG	4 cut(s)	158, 345, 1046, 1169
SfaNI	GCATC	5 cut(s)	183, 299, 423, 538, 757
SfcI	CTRYAG	2 cut(s)	261, 297
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	185, 191
Sse9I	AATT	7 cut(s)	41, 126, 243, 380, 463, 613, 1152
SsiI	CCGC	2 cut(s)	363, 620
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	948, 1008
StyD4I	CCNGG	4 cut(s)	156, 343, 1044, 1167
TaaI	ACNGT	5 cut(s)	265, 475, 921, 1016, 1106
TaqI	TCGA	2 cut(s)	74, 856
TasI	AATT	7 cut(s)	41, 126, 243, 380, 463, 613, 1152
TatI	WGTACW	3 cut(s)	177, 333, 677
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	2 cut(s)	738, 884
Tru1I	TTAA	4 cut(s)	353, 836, 848, 1155
Tru9I	TTAA	4 cut(s)	353, 836, 848, 1155
TscAI	CASTG	6 cut(s)	376, 398, 478, 823, 1021, 1096
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	296, 299, 797
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	3 cut(s)	52, 237, 637
TspGWI	ACGGA	3 cut(s)	95, 644, 678
TspRI	CASTG	6 cut(s)	376, 398, 478, 823, 1021, 1096
Tth111I	GACNNNGTC	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	4 cut(s)	41, 243, 380, 613
XceI	RCATGY	3 cut(s)	555, 1040, 1087
XmiI	GTMKAC	2 cut(s)	74, 1098
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	2 cut(s)	948, 1008
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.