Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Reverse (-)

8074231 .. 8075037

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGATTACAGAGAATCCACCGGTGAAAGTCAGTCAAAGTACAAAGGAATCCGTCGTCGGAAATGGGGCAAATGGGTATCAGAGATTAGAGTTCCGGGAACTCGTGACCGTCTCTGGTTAGGTTCATTCTCAACAGCAGAAGGTGCCGCCGTAGCACACGACGTTGCTTTCTTCTGTTTACACCAACCTGATTCTTTAGAATCTCTCAATTTCCCTCATTTGCTTAATCCTTCACTCGTTTCCAGAACTTCTCCGAGATCTATCCAGCAAGCTGCTTCTAACGCCGGCATGGCCATTGACGCCGGAATCGTCCACAGTACCAGCGTGAACTCTGGATGCGGAGATACGACGACGTATTACGAGAATGGAGCTGATCAAGTGGAGCCGTTGAATATTTCAGTGTATGATTATCTGGGCGGCCACGATCACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

144

Amino Acids

15.82

Weight (kDa)

6.03

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	12 - 61	1.9e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	3 cut(s)	147, 339, 417
AcoI	YGGCCR	2 cut(s)	291, 418
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	2 cut(s)	41, 319
AgeI	ACCGGT	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	391
AluBI	AGCT	2 cut(s)	272, 371
AluI	AGCT	2 cut(s)	272, 371
Alw26I	GTCTC	1 cut(s)	116
AoxI	GGCC	2 cut(s)	291, 418
ApeKI	GCWGC	1 cut(s)	272
AsiGI	ACCGGT	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	259
BceAI	ACGGC	2 cut(s)	134, 370
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	290
BglII	AGATCT	1 cut(s)	257
BisI	GCNGC	3 cut(s)	147, 273, 418
BlsI	GCNGC	3 cut(s)	148, 274, 419
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	145, 384
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	20
Bse118I	RCCGGY	2 cut(s)	20, 284
BseGI	GGATG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	2 cut(s)	293, 420
BshNI	GGYRCC	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	20
BsiSI	CCGG	4 cut(s)	21, 95, 285, 303
BsmAI	GTCTC	1 cut(s)	116
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	293, 420
Bsp143I	GATC	3 cut(s)	257, 373, 424
BspACI	CCGC	3 cut(s)	147, 339, 417
BspANI	GGCC	2 cut(s)	293, 420
BspLI	GGNNCC	2 cut(s)	145, 384
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	2 cut(s)	20, 284
BssAI	RCCGGY	2 cut(s)	20, 284
BssMI	GATC	3 cut(s)	257, 373, 424
BssNI	GRCGYC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	110, 317
BstACI	GRCGYC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	270, 286
BstF5I	GGATG	1 cut(s)	341
BstKTI	GATC	3 cut(s)	260, 376, 427
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	257, 373, 424
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 152, 281, 290, 299
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	293, 420
BtsCI	GGATG	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	270, 286
Cfr10I	RCCGGY	2 cut(s)	20, 284
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	40, 318
CspAI	ACCGGT	1 cut(s)	20
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	5 cut(s)	272, 293, 371, 385, 420
CviKI_1	RGCY	5 cut(s)	272, 293, 371, 385, 420
CviQI	GTAC	2 cut(s)	40, 318
DpnI	GATC	3 cut(s)	259, 375, 426
DpnII	GATC	3 cut(s)	257, 373, 424
EaeI	YGGCCR	2 cut(s)	291, 418
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	1 cut(s)	292
FaiI	YATR	2 cut(s)	290, 405
FatI	CATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	147, 273, 418
FokI	GGATG	1 cut(s)	348
Fsp4HI	GCNGC	3 cut(s)	147, 273, 418
GluI	GCNGC	3 cut(s)	147, 273, 418
HaeIII	GGCC	2 cut(s)	293, 420
HapII	CCGG	4 cut(s)	21, 95, 285, 303
HgaI	GACGC	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	292
HinfI	GANTC	5 cut(s)	14, 48, 191, 200, 306
HpaII	CCGG	4 cut(s)	21, 95, 285, 303
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	3 cut(s)	179, 313, 328
Hpy188I	TCNGA	3 cut(s)	60, 82, 255
Hpy188III	TCNNGA	3 cut(s)	104, 243, 333
Hpy8I	GTNNAC	3 cut(s)	179, 313, 328
Hpy99I	CGWCG	5 cut(s)	57, 60, 164, 352, 355
HpyAV	CCTTC	2 cut(s)	134, 240
HpyCH4III	ACNGT	2 cut(s)	110, 317
HpyCH4IV	ACGT	3 cut(s)	162, 353, 429
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 152, 281, 290, 299
HpySE526I	ACGT	3 cut(s)	162, 353, 429
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	292
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	257, 373, 424
LmnI	GCTCC	2 cut(s)	368, 382
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	326
MaeII	ACGT	3 cut(s)	162, 353, 429
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	3 cut(s)	259, 375, 426
MboI	GATC	3 cut(s)	257, 373, 424
MboII	GAAGA	1 cut(s)	163
MflI	RGATCY	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	1 cut(s)	208
MluNI	TGGCCA	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	1 cut(s)	225
Mox20I	TGGCCA	1 cut(s)	293
MroNI	GCCGGC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	4 cut(s)	21, 95, 285, 303
MspR9I	CCNGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	5 cut(s)	143, 152, 281, 290, 299
NaeI	GCCGGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	3 cut(s)	257, 373, 424
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	145, 384
NmuCI	GTSAC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	5 cut(s)	14, 48, 191, 200, 306
PfoI	TCCNGGA	1 cut(s)	94
PinAI	ACCGGT	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	148, 274, 419
PspN4I	GGNNCC	2 cut(s)	145, 384
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	2 cut(s)	41, 319
RsaNI	GTAC	2 cut(s)	40, 318
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	3 cut(s)	147, 273, 418
Sau3AI	GATC	3 cut(s)	257, 373, 424
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	8 cut(s)	124, 145, 165, 190, 274, 356, 373, 432
SfaNI	GCATC	1 cut(s)	326
SgrAI	CRCCGGYG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	3 cut(s)	147, 339, 417
SspI	AATATT	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	110, 317
TaiI	ACGT	3 cut(s)	165, 356, 432
TasI	AATT	1 cut(s)	208
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	2 cut(s)	149, 420
TfiI	GAWTC	5 cut(s)	14, 48, 191, 200, 306
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.