Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

13670925 .. 13671389

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAGCCGGGAATGGCCTCAAGTTGAAGGGAGTGCGTCAAAGAAAATGGGGCAAGTGGGTGTCGGAAATTCGCGTCCCCGGCACCCAGGACCGCCTCTGGCTCGGCTCTTTCTCCACTGCAGAGGCCGCCGCAGTGGCTCGCGACGTTGCTTACTATTGCTTGCGTAAGCCTTCGACTCTGGAGGGGCTCAACTTCCCTACAATCTTGCCGTGTTCGGTTAATCAAGCGGCGGACATGTCGCCGAGGTCGATACAGAAGGCGGCTTCGGATGCTGGCATGGCCGTTGATGCTCAGCTGATCAATGCTAATAGTAACAGCTCGTCGCAGCAGAATGGGAGACAGGCCAACGGAAGTGAGCCACGAGTAATGCAGAGCGATGGGTGTTGGGAGGATACCGGTGAGAGTTCATCAGCCAATACCGGCGGCGAGGCGCTGAGCATTTCGATTGAAGATTATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

154

Amino Acids

16.4

Weight (kDa)

5.46

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	8 - 51	2.2e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccII	CGCG	2 cut(s)	75, 144
AciI	CCGC	7 cut(s)	94, 129, 132, 230, 233, 263, 426
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	237
AgeI	ACCGGT	1 cut(s)	398
AgsI	TTSAA	2 cut(s)	28, 452
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	2 cut(s)	298, 321
AluI	AGCT	2 cut(s)	298, 321
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	4 cut(s)	16, 126, 282, 345
ApeKI	GCWGC	2 cut(s)	5, 328
ApoI	RAATTY	1 cut(s)	69
AsiGI	ACCGGT	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	2 cut(s)	10, 81
AsuHPI	GGTGA	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	17, 340
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	2 cut(s)	196, 269
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	388
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	2 cut(s)	10, 81
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	463
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	388
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	7 cut(s)	6, 129, 132, 231, 264, 329, 427
BlpI	GCTNAGC	2 cut(s)	294, 437
BlsI	GCNGC	7 cut(s)	7, 130, 133, 232, 265, 330, 428
Bme1390I	CCNGG	3 cut(s)	10, 81, 89
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	3 cut(s)	10, 81, 89
BmsI	GCATC	2 cut(s)	262, 280
BpmI	CTGGAG	1 cut(s)	203
Bpu1102I	GCTNAGC	2 cut(s)	294, 437
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	2 cut(s)	10, 81
BsaJI	CCNNGG	3 cut(s)	79, 87, 245
BsaWI	WCCGGW	1 cut(s)	398
Bse118I	RCCGGY	2 cut(s)	398, 422
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	3 cut(s)	79, 87, 245
BseGI	GGATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	308, 428
BseXI	GCAGC	2 cut(s)	17, 340
Bsh1236I	CGCG	2 cut(s)	75, 144
BshFI	GGCC	4 cut(s)	18, 128, 284, 347
BshNI	GGYRCC	1 cut(s)	83
BshTI	ACCGGT	1 cut(s)	398
BsiSI	CCGG	4 cut(s)	9, 81, 399, 423
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	4 cut(s)	18, 128, 284, 347
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	300
Bsp1720I	GCTNAGC	2 cut(s)	294, 437
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	7 cut(s)	94, 129, 132, 230, 233, 263, 426
BspANI	GGCC	4 cut(s)	18, 128, 284, 347
BspCNI	CTCAG	2 cut(s)	307, 429
BspFNI	CGCG	2 cut(s)	75, 144
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	83
BsrFI	RCCGGY	2 cut(s)	398, 422
BssAI	RCCGGY	2 cut(s)	398, 422
BssECI	CCNNGG	3 cut(s)	79, 87, 245
BssMI	GATC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	142, 164, 277
BstDEI	CTNAG	2 cut(s)	294, 437
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	2 cut(s)	75, 144
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 128, 137, 272, 281, 290
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	8, 79, 87
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	2 cut(s)	75, 144
BstV1I	GCAGC	2 cut(s)	17, 340
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	4 cut(s)	18, 128, 284, 347
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	2 cut(s)	117, 141
BtsIMutI	CAGTG	2 cut(s)	117, 141
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	3 cut(s)	142, 164, 277
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	2 cut(s)	398, 422
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	2 cut(s)	26, 64
CspAI	ACCGGT	1 cut(s)	398
CviAII	CATG	2 cut(s)	238, 280
DdeI	CTNAG	2 cut(s)	294, 437
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	2 cut(s)	241, 283
FaiI	YATR	2 cut(s)	239, 281
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	2 cut(s)	237, 279
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	7 cut(s)	6, 129, 132, 231, 264, 329, 427
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	7 cut(s)	6, 129, 132, 231, 264, 329, 427
FspBI	CTAG	1 cut(s)	463
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	7 cut(s)	6, 129, 132, 231, 264, 329, 427
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	4 cut(s)	18, 128, 284, 347
HapII	CCGG	4 cut(s)	9, 81, 399, 423
HgaI	GACGC	2 cut(s)	26, 64
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	2 cut(s)	241, 283
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	4 cut(s)	9, 81, 399, 423
HphI	GGTGA	1 cut(s)	413
Hpy188I	TCNGA	2 cut(s)	67, 271
Hpy188III	TCNNGA	2 cut(s)	143, 182
Hpy99I	CGWCG	2 cut(s)	149, 328
HpyAV	CCTTC	3 cut(s)	22, 183, 253
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	122, 373
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 128, 137, 272, 281, 290
HpyF3I	CTNAG	2 cut(s)	294, 437
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	241, 283
HspAI	GCGC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	300
Lsp1109I	GCAGC	2 cut(s)	17, 340
LweI	GCATC	2 cut(s)	262, 280
MaeI	CTAG	1 cut(s)	463
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	1 cut(s)	464
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	7 cut(s)	29, 107, 118, 178, 240, 385, 424
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	4 cut(s)	9, 81, 399, 423
MspR9I	CCNGG	3 cut(s)	10, 81, 89
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	2 cut(s)	75, 144
MwoI	GCNNNNNNNGC	6 cut(s)	81, 128, 137, 272, 281, 290
NciI	CCSGG	2 cut(s)	10, 81
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	2 cut(s)	241, 283
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	2 cut(s)	84, 270
NruI	TCGCGA	1 cut(s)	144
NspI	RCATGY	1 cut(s)	241
PciI	ACATGT	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PinAI	ACCGGT	1 cut(s)	398
PkrI	GCNGC	7 cut(s)	7, 130, 133, 232, 265, 330, 428
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PscI	ACATGT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	298
RruI	TCGCGA	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	7 cut(s)	6, 129, 132, 231, 264, 329, 427
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	3 cut(s)	10, 81, 89
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	4 cut(s)	150, 251, 300, 323
SfaNI	GCATC	2 cut(s)	262, 280
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	7 cut(s)	94, 129, 132, 230, 233, 263, 426
SspMI	CTAG	1 cut(s)	463
StyD4I	CCNGG	3 cut(s)	8, 79, 87
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	176, 251, 446
TasI	AATT	1 cut(s)	69
TauI	GCSGC	5 cut(s)	131, 134, 233, 266, 429
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	124, 141
TseI	GCWGC	2 cut(s)	5, 328
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	2 cut(s)	124, 141
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	1 cut(s)	241
XspI	CTAG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.