Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Reverse (-)

43758268 .. 43759090

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG395700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAAATCCGTACCTTTTACTTAGAAGACAGCAGCAGTCCGACGACAGCCGGGAACGGCCGCAAGTTGAAGAGAGTGCGTCAAAGAAAATGGGGCAAGTGGGTGCCGGAAATCCGCGTCCCCGGCAAGCTGGACCGCCTCTGGCTCGACTCTTTCTCCACTGCCGAGGCCGCCGCCGTGGCTCGCGACGTTGCTTACTATTGCTTGCGTAAGCCTTCGACTCTGGAGGGCCTCAACTTTCCTACAATCTTGCCGTGTTCGGTTAATCAAGCGGCGGACATGTCGCCAAGGTCGATACAGAAGGCGGCTTCGGATGTCGGCATGGCCGTTGATGCTCAGCTGATCAATGCTTATAGTAACAGCTCGTCGTCACCGCAGAACGGGAGACAGGCCAACGGAAGTGAGCCACGTGGAATGCAGAGCGGTGGGTGTTGGGACGACGCCGGTGAGAGTTCATCAGCCACTACTGGCGGTGTTGCGCTGAGTATTTCGATTGAAGATTATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

169

Amino Acids

18.22

Weight (kDa)

7.66

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	423
AccII	CGCG	2 cut(s)	117, 186
AcoI	YGGCCR	2 cut(s)	58, 324
AcvI	CACGTG	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	70, 497
AluBI	AGCT	3 cut(s)	130, 340, 363
AluI	AGCT	3 cut(s)	130, 340, 363
Alw26I	GTCTC	1 cut(s)	379
AoxI	GGCC	5 cut(s)	58, 168, 229, 324, 390
ApeKI	GCWGC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	133, 229
AsuC2I	CCSGG	2 cut(s)	52, 123
AsuHPI	GGTGA	2 cut(s)	363, 458
AvaII	GGWCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	103
BbrPI	CACGTG	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	45
BceAI	ACGGC	4 cut(s)	73, 161, 238, 311
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	2 cut(s)	52, 123
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	1 cut(s)	508
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	6 cut(s)	34, 61, 171, 174, 273, 306
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	6 cut(s)	35, 62, 172, 175, 274, 307
Bme1390I	CCNGG	2 cut(s)	52, 123
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	133, 229
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	52, 123
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuMI	CCSGG	2 cut(s)	52, 123
BsaAI	YACGTR	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	4 cut(s)	121, 165, 177, 287
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	472
BseDI	CCNNGG	4 cut(s)	121, 165, 177, 287
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	350, 473
BseNI	ACTGG	1 cut(s)	472
BseX3I	CGGCCG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	45
Bsh1236I	CGCG	2 cut(s)	117, 186
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	5 cut(s)	60, 170, 231, 326, 392
BshNI	GGYRCC	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	61
BsiSI	CCGG	4 cut(s)	51, 107, 123, 444
BslFI	GGGAC	2 cut(s)	104, 449
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	104, 449
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	5 cut(s)	60, 170, 231, 326, 392
Bsp143I	GATC	1 cut(s)	342
Bsp1720I	GCTNAGC	1 cut(s)	336
Bsp68I	TCGCGA	1 cut(s)	186
BspANI	GGCC	5 cut(s)	60, 170, 231, 326, 392
BspCNI	CTCAG	2 cut(s)	349, 474
BspFNI	CGCG	2 cut(s)	117, 186
BspLI	GGNNCC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	103
BsrBI	CCGCTC	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	4 cut(s)	121, 165, 177, 287
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	441
BstBAI	YACGTR	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	128, 184, 206
BstDEI	CTNAG	3 cut(s)	22, 336, 482
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	2 cut(s)	117, 186
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	342
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 170, 179, 332
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	50, 121
BstUI	CGCG	2 cut(s)	117, 186
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	33
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	5 cut(s)	60, 170, 231, 326, 392
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
BtuMI	TCGCGA	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	128, 184, 206
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	133, 229
CseI	GACGC	3 cut(s)	68, 106, 449
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	2 cut(s)	280, 322
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	3 cut(s)	22, 336, 482
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
EaeI	YGGCCR	2 cut(s)	58, 324
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	290
EclXI	CGGCCG	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	133
Eco52I	CGGCCG	1 cut(s)	58
Eco72I	CACGTG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	2 cut(s)	283, 325
FaiI	YATR	3 cut(s)	281, 323, 354
FaqI	GGGAC	2 cut(s)	104, 449
FatI	CATG	2 cut(s)	279, 321
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	6 cut(s)	34, 61, 171, 174, 273, 306
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	6 cut(s)	34, 61, 171, 174, 273, 306
FspBI	CTAG	1 cut(s)	508
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	6 cut(s)	34, 61, 171, 174, 273, 306
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	5 cut(s)	60, 170, 231, 326, 392
HapII	CCGG	4 cut(s)	51, 107, 123, 444
HgaI	GACGC	3 cut(s)	68, 106, 449
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	2 cut(s)	283, 325
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HinfI	GANTC	2 cut(s)	149, 220
HpaII	CCGG	4 cut(s)	51, 107, 123, 444
HphI	GGTGA	2 cut(s)	363, 458
Hpy188I	TCNGA	2 cut(s)	42, 313
Hpy188III	TCNNGA	2 cut(s)	185, 224
Hpy99I	CGWCG	4 cut(s)	46, 191, 370, 443
HpyAV	CCTTC	2 cut(s)	225, 295
HpyCH4IV	ACGT	2 cut(s)	189, 409
HpyCH4V	TGCA	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 170, 179, 332
HpyF3I	CTNAG	3 cut(s)	22, 336, 482
HpySE526I	ACGT	2 cut(s)	189, 409
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	283, 325
HspAI	GCGC	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	342
LpnPI	CCDG	9 cut(s)	64, 116, 120, 127, 136, 209, 374, 453, 457
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	508
MaeII	ACGT	2 cut(s)	189, 409
MaeIII	GTNAC	2 cut(s)	356, 369
MalI	GATC	1 cut(s)	344
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	1 cut(s)	342
MboII	GAAGA	3 cut(s)	38, 82, 509
MlyI	GAGTC	2 cut(s)	143, 214
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	4 cut(s)	149, 160, 220, 242
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	4 cut(s)	51, 107, 123, 444
MspR9I	CCNGG	2 cut(s)	52, 123
Mva1269I	GAATGC	1 cut(s)	420
MvnI	CGCG	2 cut(s)	117, 186
MwoI	GCNNNNNNNGC	4 cut(s)	123, 170, 179, 332
NciI	CCSGG	2 cut(s)	52, 123
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	2 cut(s)	283, 325
NlaIV	GGNNCC	1 cut(s)	105
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	369
NruI	TCGCGA	1 cut(s)	186
NspI	RCATGY	1 cut(s)	283
PciI	ACATGT	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	2 cut(s)	290, 324
PctI	GAATGC	1 cut(s)	420
PkrI	GCNGC	6 cut(s)	35, 62, 172, 175, 274, 307
PleI	GAGTC	2 cut(s)	143, 214
PmaCI	CACGTG	1 cut(s)	410
PmlI	CACGTG	1 cut(s)	410
PpsI	GAGTC	2 cut(s)	143, 214
Ppu21I	YACGTR	1 cut(s)	410
PscI	ACATGT	1 cut(s)	279
PspCI	CACGTG	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	133, 229
PvuII	CAGCTG	1 cut(s)	340
RruI	TCGCGA	1 cut(s)	186
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	6 cut(s)	34, 61, 171, 174, 273, 306
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	2 cut(s)	133, 229
SchI	GAGTC	2 cut(s)	143, 214
ScrFI	CCNGG	2 cut(s)	52, 123
SetI	ASST	7 cut(s)	17, 132, 192, 293, 342, 365, 412
SfaNI	GCATC	1 cut(s)	322
SgrAI	CRCCGGYG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	133
SspMI	CTAG	1 cut(s)	508
StyD4I	CCNGG	2 cut(s)	50, 121
StyI	CCWWGG	1 cut(s)	287
TaiI	ACGT	2 cut(s)	192, 412
TaqI	TCGA	4 cut(s)	147, 218, 293, 491
TauI	GCSGC	5 cut(s)	63, 173, 176, 275, 308
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	133
XceI	RCATGY	1 cut(s)	283
XspI	CTAG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.