Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Reverse (-)

58198078 .. 58198578

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG413900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGTTACAGTTCAGAAGACAGCAGCAGTCCGACGATGGCCTGGAACGGCCGCAAGTTGAAGGGAGTGCGTCAAAGAAAATGGGGCAAGTGGGTGTCGGAAATTCGCGTCCCCGGCACGCAGGACCGCCTCTGGCTCGGCTCTTTCTCCACTGCAGAGGCCGCCGCCGTGGCTCGCGACGTTGCTTACTATTGCTTACGTAAGCCTTCGACTCTGGATGGGCTCAACTTCCCTACAATCTTGCCGTGTTCGGTTAATCAAGCGGCGGACATGTCGCCGAGGTCGATACAGAAGGCGGCTTCGGATGCCGGCATGGCCGTTGATGCTCAGCTGGTCAATGCTAATAGTAACAGCTCGTCGCAGCAGAATGGGAGACAGGCCAACGGAAGTGAGCCACGAGTAGTAATGCAGAGCGATGCGTGTTGGGAGGATACCGGTGAGAGTTCATCAGCCAATACTGGCGGCGAGGCGCTGAGCATTTCGATTGAAGATTATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

166

Amino Acids

17.84

Weight (kDa)

5.17

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	19 - 62	3.4e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	108, 177
AciI	CCGC	8 cut(s)	52, 127, 162, 165, 263, 266, 296, 462
AcoI	YGGCCR	2 cut(s)	49, 315
AcsI	RAATTY	1 cut(s)	102
AflIII	ACRYGT	1 cut(s)	270
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	2 cut(s)	61, 488
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	2 cut(s)	331, 354
AluI	AGCT	2 cut(s)	331, 354
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	5 cut(s)	39, 49, 159, 315, 378
ApeKI	GCWGC	2 cut(s)	24, 361
ApoI	RAATTY	1 cut(s)	102
AsiGI	ACCGGT	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	36, 373
BccI	CCATC	2 cut(s)	31, 212
BceAI	ACGGC	4 cut(s)	64, 152, 229, 302
BciT130I	CCWGG	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	499
BfmI	CTRYAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	424
BglI	GCCNNNNNGGC	2 cut(s)	170, 314
BisI	GCNGC	8 cut(s)	25, 52, 162, 165, 264, 297, 362, 463
BlpI	GCTNAGC	2 cut(s)	327, 473
BlsI	GCNGC	8 cut(s)	26, 53, 163, 166, 265, 298, 363, 464
Bme1390I	CCNGG	2 cut(s)	43, 114
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	43, 114
BmsI	GCATC	3 cut(s)	295, 313, 406
BpiI	GAAGAC	1 cut(s)	24
Bpu1102I	GCTNAGC	2 cut(s)	327, 473
BpuMI	CCSGG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	112, 168, 278
BsaWI	WCCGGW	1 cut(s)	434
Bse118I	RCCGGY	2 cut(s)	308, 434
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	3 cut(s)	112, 168, 278
BseGI	GGATG	2 cut(s)	223, 310
BseMII	CTCAG	2 cut(s)	341, 464
BseNI	ACTGG	1 cut(s)	463
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	36, 373
Bsh1236I	CGCG	2 cut(s)	108, 177
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	5 cut(s)	41, 51, 161, 317, 380
BshTI	ACCGGT	1 cut(s)	434
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	3 cut(s)	114, 309, 435
BslFI	GGGAC	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	5 cut(s)	41, 51, 161, 317, 380
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp1720I	GCTNAGC	2 cut(s)	327, 473
Bsp68I	TCGCGA	1 cut(s)	177
BspACI	CCGC	8 cut(s)	52, 127, 162, 165, 263, 266, 296, 462
BspANI	GGCC	5 cut(s)	41, 51, 161, 317, 380
BspCNI	CTCAG	2 cut(s)	340, 465
BspFNI	CGCG	2 cut(s)	108, 177
BspMAI	CTGCAG	1 cut(s)	157
BsrFI	RCCGGY	2 cut(s)	308, 434
BsrI	ACTGG	1 cut(s)	463
BssAI	RCCGGY	2 cut(s)	308, 434
BssECI	CCNNGG	3 cut(s)	112, 168, 278
BssSI	CACGAG	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	119, 175, 310
BstDEI	CTNAG	2 cut(s)	327, 473
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	223, 310
BstFNI	CGCG	2 cut(s)	108, 177
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	472
BstMAI	GTCTC	1 cut(s)	367
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 161, 170, 305, 314, 323
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	41, 112
BstSFI	CTRYAG	1 cut(s)	153
BstSNI	TACGTA	1 cut(s)	200
BstUI	CGCG	2 cut(s)	108, 177
BstV1I	GCAGC	2 cut(s)	36, 373
BstV2I	GAAGAC	1 cut(s)	24
BstZI	CGGCCG	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	5 cut(s)	41, 51, 161, 317, 380
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	223, 310
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
BtuMI	TCGCGA	1 cut(s)	177
Cac8I	GCNNGC	3 cut(s)	119, 175, 310
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	2 cut(s)	308, 434
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	2 cut(s)	59, 97
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	2 cut(s)	271, 313
DdeI	CTNAG	2 cut(s)	327, 473
EaeI	YGGCCR	2 cut(s)	49, 315
EagI	CGGCCG	1 cut(s)	49
EciI	GGCGGA	1 cut(s)	281
EclXI	CGGCCG	1 cut(s)	49
Eco105I	TACGTA	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	2 cut(s)	274, 316
FaiI	YATR	2 cut(s)	272, 314
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	270, 312
Fnu4HI	GCNGC	8 cut(s)	25, 52, 162, 165, 264, 297, 362, 463
FokI	GGATG	2 cut(s)	230, 317
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	8 cut(s)	25, 52, 162, 165, 264, 297, 362, 463
FspBI	CTAG	1 cut(s)	499
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	8 cut(s)	25, 52, 162, 165, 264, 297, 362, 463
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	5 cut(s)	41, 51, 161, 317, 380
HapII	CCGG	3 cut(s)	114, 309, 435
HgaI	GACGC	2 cut(s)	59, 97
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	2 cut(s)	274, 316
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	3 cut(s)	114, 309, 435
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	16, 33, 100, 304
Hpy188III	TCNNGA	2 cut(s)	176, 215
Hpy99I	CGWCG	3 cut(s)	37, 182, 361
HpyAV	CCTTC	3 cut(s)	55, 216, 286
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	2 cut(s)	180, 199
HpyCH4V	TGCA	2 cut(s)	155, 409
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 161, 170, 305, 314, 323
HpyF3I	CTNAG	2 cut(s)	327, 473
HpySE526I	ACGT	2 cut(s)	180, 199
Hsp92II	CATG	2 cut(s)	274, 316
HspAI	GCGC	1 cut(s)	470
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Lsp1109I	GCAGC	2 cut(s)	36, 373
LweI	GCATC	3 cut(s)	295, 313, 406
MaeI	CTAG	1 cut(s)	499
MaeII	ACGT	2 cut(s)	180, 199
MaeIII	GTNAC	2 cut(s)	5, 347
MboII	GAAGA	2 cut(s)	29, 500
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	56, 78
MnlI	CCTC	5 cut(s)	140, 151, 273, 421, 460
MroNI	GCCGGC	1 cut(s)	308
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	3 cut(s)	114, 309, 435
MspR9I	CCNGG	2 cut(s)	43, 114
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	108, 177
MwoI	GCNNNNNNNGC	6 cut(s)	114, 161, 170, 305, 314, 323
NaeI	GCCGGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	114
NgoMIV	GCCGGC	1 cut(s)	308
NlaIII	CATG	2 cut(s)	274, 316
NmeAIII	GCCGAG	2 cut(s)	117, 303
NruI	TCGCGA	1 cut(s)	177
NspI	RCATGY	1 cut(s)	274
PciI	ACATGT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PdiI	GCCGGC	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	8 cut(s)	26, 53, 163, 166, 265, 298, 363, 464
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	200
PscI	ACATGT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	331
RruI	TCGCGA	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	8 cut(s)	25, 52, 162, 165, 264, 297, 362, 463
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	43, 114
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	5 cut(s)	183, 202, 284, 333, 356
SfaNI	GCATC	3 cut(s)	295, 313, 406
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	124
SnaBI	TACGTA	1 cut(s)	200
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	8 cut(s)	52, 127, 162, 165, 263, 266, 296, 462
SspMI	CTAG	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	41, 112
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	2 cut(s)	183, 202
TaqI	TCGA	3 cut(s)	209, 284, 482
TasI	AATT	1 cut(s)	102
TauI	GCSGC	6 cut(s)	54, 164, 167, 266, 299, 465
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	2 cut(s)	24, 361
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.