Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Reverse (-)

43778387 .. 43778884

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG395900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGTTACAGTTCAGAAGACAGCAGCAGTCCGACGATGGCAGGGAACGGCCGCAAGTTGAAGGGAGTGCGTCAAAGAAAATGGGGCAAATGGGTGTCGGAAATTCGCGTCCCCGGCACGCAGGACCGCCTCTGGCTCGGCACTTTCTCCACTGCAGAGGCCGCCGCCGTGGCTCGCGACGTTGCTTACTATTGCTTACGTAAGCCTTCGACTCTGGAGGGGCTCAACTTCCCTACAATCTTGCCGTGTTCGGTTAATCAAGCGGCGGACATGTCGCCGAGGTCGATACAGAAGGCGGCTTCGGATGCCGGCATGGCCGTTGATGCTCAGCTGATCAATGCTAATAGTAACAGCTCGTCGCAGCAGAATGGGAGACAGGCCAACGGAAGTGAGCCACGTGTAATGCAGAGCGGTGGGTGTTGGGAGGATACCGGTGAGAGTTCATCAGCCAATACCGGCGGCGAGGCGCTGAGCATTTCGATTGAAGATTATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

165

Amino Acids

17.59

Weight (kDa)

5.5

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	19 - 62	4.6e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	411
AccII	CGCG	2 cut(s)	108, 177
AciI	CCGC	9 cut(s)	52, 127, 162, 165, 263, 266, 296, 411, 459
AcoI	YGGCCR	2 cut(s)	49, 315
AcsI	RAATTY	1 cut(s)	102
AcvI	CACGTG	1 cut(s)	398
AflIII	ACRYGT	2 cut(s)	270, 397
AgeI	ACCGGT	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	61, 485
AluBI	AGCT	2 cut(s)	331, 354
AluI	AGCT	2 cut(s)	331, 354
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	4 cut(s)	49, 159, 315, 378
ApeKI	GCWGC	2 cut(s)	24, 361
ApoI	RAATTY	1 cut(s)	102
AsiGI	ACCGGT	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	225
BbrPI	CACGTG	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	36, 373
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	4 cut(s)	64, 152, 229, 302
BciVI	GTATCC	1 cut(s)	421
BclI	TGATCA	1 cut(s)	333
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	496
BfmI	CTRYAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	470
BfuI	GTATCC	1 cut(s)	421
BglI	GCCNNNNNGGC	2 cut(s)	170, 314
BisI	GCNGC	8 cut(s)	25, 52, 162, 165, 264, 297, 362, 460
BlpI	GCTNAGC	2 cut(s)	327, 470
BlsI	GCNGC	8 cut(s)	26, 53, 163, 166, 265, 298, 363, 461
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	295, 313
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	2 cut(s)	327, 470
BpuMI	CCSGG	1 cut(s)	114
BsaAI	YACGTR	2 cut(s)	200, 398
BsaJI	CCNNGG	3 cut(s)	112, 168, 278
BsaWI	WCCGGW	1 cut(s)	431
Bse118I	RCCGGY	3 cut(s)	308, 431, 455
BseDI	CCNNGG	3 cut(s)	112, 168, 278
BseGI	GGATG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	341, 461
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	36, 373
Bsh1236I	CGCG	2 cut(s)	108, 177
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	4 cut(s)	51, 161, 317, 380
BshTI	ACCGGT	1 cut(s)	431
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	4 cut(s)	114, 309, 432, 456
BslFI	GGGAC	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	4 cut(s)	51, 161, 317, 380
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	333
Bsp1720I	GCTNAGC	2 cut(s)	327, 470
Bsp68I	TCGCGA	1 cut(s)	177
BspACI	CCGC	9 cut(s)	52, 127, 162, 165, 263, 266, 296, 411, 459
BspANI	GGCC	4 cut(s)	51, 161, 317, 380
BspCNI	CTCAG	2 cut(s)	340, 462
BspFNI	CGCG	2 cut(s)	108, 177
BspMAI	CTGCAG	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	411
BsrFI	RCCGGY	3 cut(s)	308, 431, 455
BssAI	RCCGGY	3 cut(s)	308, 431, 455
BssECI	CCNNGG	3 cut(s)	112, 168, 278
BssMI	GATC	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	11
BstBAI	YACGTR	2 cut(s)	200, 398
BstC8I	GCNNGC	3 cut(s)	119, 175, 310
BstDEI	CTNAG	2 cut(s)	327, 470
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	2 cut(s)	108, 177
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	333
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 161, 170, 305, 314, 323
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	153
BstSNI	TACGTA	1 cut(s)	200
BstUI	CGCG	2 cut(s)	108, 177
BstV1I	GCAGC	2 cut(s)	36, 373
BstV2I	GAAGAC	1 cut(s)	24
BstZI	CGGCCG	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	4 cut(s)	51, 161, 317, 380
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
BtuMI	TCGCGA	1 cut(s)	177
Cac8I	GCNNGC	3 cut(s)	119, 175, 310
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	3 cut(s)	308, 431, 455
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	2 cut(s)	59, 97
CspAI	ACCGGT	1 cut(s)	431
CviAII	CATG	2 cut(s)	271, 313
DdeI	CTNAG	2 cut(s)	327, 470
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
EaeI	YGGCCR	2 cut(s)	49, 315
EagI	CGGCCG	1 cut(s)	49
EciI	GGCGGA	1 cut(s)	281
EclXI	CGGCCG	1 cut(s)	49
Eco105I	TACGTA	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	2 cut(s)	274, 316
FaiI	YATR	2 cut(s)	272, 314
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	270, 312
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	8 cut(s)	25, 52, 162, 165, 264, 297, 362, 460
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	8 cut(s)	25, 52, 162, 165, 264, 297, 362, 460
FspBI	CTAG	1 cut(s)	496
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	8 cut(s)	25, 52, 162, 165, 264, 297, 362, 460
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	4 cut(s)	51, 161, 317, 380
HapII	CCGG	4 cut(s)	114, 309, 432, 456
HgaI	GACGC	2 cut(s)	59, 97
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	2 cut(s)	274, 316
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	4 cut(s)	114, 309, 432, 456
HphI	GGTGA	1 cut(s)	446
Hpy188I	TCNGA	4 cut(s)	16, 33, 100, 304
Hpy188III	TCNNGA	2 cut(s)	176, 215
Hpy99I	CGWCG	3 cut(s)	37, 182, 361
HpyAV	CCTTC	3 cut(s)	55, 216, 286
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	3 cut(s)	180, 199, 397
HpyCH4V	TGCA	2 cut(s)	155, 406
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 161, 170, 305, 314, 323
HpyF3I	CTNAG	2 cut(s)	327, 470
HpySE526I	ACGT	3 cut(s)	180, 199, 397
Hsp92II	CATG	2 cut(s)	274, 316
HspAI	GCGC	1 cut(s)	467
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	333
LpnPI	CCDG	9 cut(s)	27, 107, 118, 127, 200, 322, 362, 445, 469
Lsp1109I	GCAGC	2 cut(s)	36, 373
LweI	GCATC	2 cut(s)	295, 313
MaeI	CTAG	1 cut(s)	496
MaeII	ACGT	3 cut(s)	180, 199, 397
MaeIII	GTNAC	2 cut(s)	5, 347
MalI	GATC	1 cut(s)	335
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	1 cut(s)	333
MboII	GAAGA	2 cut(s)	29, 497
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	56, 78
MnlI	CCTC	6 cut(s)	140, 151, 211, 273, 418, 457
MroNI	GCCGGC	1 cut(s)	308
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	4 cut(s)	114, 309, 432, 456
MspR9I	CCNGG	1 cut(s)	114
MvnI	CGCG	2 cut(s)	108, 177
MwoI	GCNNNNNNNGC	6 cut(s)	114, 161, 170, 305, 314, 323
NaeI	GCCGGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	333
NgoMIV	GCCGGC	1 cut(s)	308
NlaIII	CATG	2 cut(s)	274, 316
NmeAIII	GCCGAG	2 cut(s)	117, 303
NruI	TCGCGA	1 cut(s)	177
NspI	RCATGY	1 cut(s)	274
PciI	ACATGT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PdiI	GCCGGC	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	431
PkrI	GCNGC	8 cut(s)	26, 53, 163, 166, 265, 298, 363, 461
PleI	GAGTC	1 cut(s)	205
PmaCI	CACGTG	1 cut(s)	398
PmlI	CACGTG	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	2 cut(s)	200, 398
PscI	ACATGT	1 cut(s)	270
PspCI	CACGTG	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	331
RruI	TCGCGA	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	8 cut(s)	25, 52, 162, 165, 264, 297, 362, 460
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	6 cut(s)	183, 202, 284, 333, 356, 400
SfaNI	GCATC	2 cut(s)	295, 313
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	124
SnaBI	TACGTA	1 cut(s)	200
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	9 cut(s)	52, 127, 162, 165, 263, 266, 296, 411, 459
SspMI	CTAG	1 cut(s)	496
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	3 cut(s)	183, 202, 400
TaqI	TCGA	3 cut(s)	209, 284, 479
TasI	AATT	1 cut(s)	102
TauI	GCSGC	6 cut(s)	54, 164, 167, 266, 299, 462
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	2 cut(s)	24, 361
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.