Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

15320619 .. 15321122

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001415

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGTTACAGTTCAGAAGACAGCAGCAGTCCGACGACGGCAGCAGGGAATGGCCGCAAGTTGAAGGGATGGGTGTCGGAAATCCGCGTCCCCGGCACGCAGGACCGCCTCTGGCTCGGCTCTTTCTCCACTGCCGAGGCCGCCGCCGTGGCTCGTGACGTTGCTTACTATTGCTTGCGTAAGCCTTCGACTCTGGAGGGCCTCAACTTTCCTACAATCTTGCCGTGTTCGGTTAATCAAGCGGCGGACATGTCGCCGAGGTCGATACAGAAGGCGGCTTCGGATGCCGGCATGGCCGTTGATGCTCAGCTGATCAATGCTAATAGTATTAACAGCTCGTCGCCGCAGAACGGGAGACAGGCCAACGGAAGTGAGCCACGTGGAATGCAGAGCGGGGGGTGTTGGGAGGATACCGGTGAGAGTTCATCCGCCAATACCAGCGGCGAGGCGCTGACCATTTCCATTGAAGATTATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

160

Amino Acids

16.66

Weight (kDa)

4.67

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	393
AccII	CGCG	1 cut(s)	87
AcoI	YGGCCR	2 cut(s)	52, 294
AcvI	CACGTG	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	249
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	64, 467
AluBI	AGCT	2 cut(s)	310, 336
AluI	AGCT	2 cut(s)	310, 336
Alw26I	GTCTC	1 cut(s)	349
AoxI	GGCC	5 cut(s)	52, 138, 199, 294, 360
ApeKI	GCWGC	2 cut(s)	24, 41
AsiGI	ACCGGT	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	2 cut(s)	103, 199
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	153
BbrPI	CACGTG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	36, 53
BccI	CCATC	1 cut(s)	63
BceAI	ACGGC	4 cut(s)	54, 131, 208, 281
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	403
BglI	GCCNNNNNGGC	2 cut(s)	149, 293
BisI	GCNGC	9 cut(s)	25, 42, 55, 141, 144, 243, 276, 344, 442
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	9 cut(s)	26, 43, 56, 142, 145, 244, 277, 345, 443
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 199
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	2 cut(s)	274, 292
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	215
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	4 cut(s)	91, 135, 147, 257
BsaWI	WCCGGW	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	2 cut(s)	287, 413
BseDI	CCNNGG	4 cut(s)	91, 135, 147, 257
BseGI	GGATG	3 cut(s)	74, 289, 425
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	36, 53
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	5 cut(s)	54, 140, 201, 296, 362
BshTI	ACCGGT	1 cut(s)	413
BsiSI	CCGG	3 cut(s)	93, 288, 414
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	5 cut(s)	54, 140, 201, 296, 362
Bsp143I	GATC	1 cut(s)	312
Bsp1720I	GCTNAGC	1 cut(s)	306
BspANI	GGCC	5 cut(s)	54, 140, 201, 296, 362
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	87
BsrBI	CCGCTC	1 cut(s)	393
BsrFI	RCCGGY	2 cut(s)	287, 413
BssAI	RCCGGY	2 cut(s)	287, 413
BssECI	CCNNGG	4 cut(s)	91, 135, 147, 257
BssMI	GATC	1 cut(s)	312
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	98, 176, 289
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	3 cut(s)	74, 289, 425
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 140, 149, 284, 293, 302
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	36, 53
BstV2I	GAAGAC	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	5 cut(s)	54, 140, 201, 296, 362
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	74, 289, 425
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	3 cut(s)	98, 176, 289
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	2 cut(s)	287, 413
Cfr13I	GGNCC	2 cut(s)	103, 199
CseI	GACGC	1 cut(s)	76
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	2 cut(s)	250, 292
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
EaeI	YGGCCR	2 cut(s)	52, 294
EciI	GGCGGA	2 cut(s)	260, 418
Eco47I	GGWCC	1 cut(s)	103
Eco72I	CACGTG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	199
FaeI	CATG	2 cut(s)	253, 295
FaiI	YATR	2 cut(s)	251, 293
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	2 cut(s)	249, 291
FauI	CCCGC	1 cut(s)	386
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	9 cut(s)	25, 42, 55, 141, 144, 243, 276, 344, 442
FokI	GGATG	3 cut(s)	81, 296, 412
Fsp4HI	GCNGC	9 cut(s)	25, 42, 55, 141, 144, 243, 276, 344, 442
FspBI	CTAG	1 cut(s)	478
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	9 cut(s)	25, 42, 55, 141, 144, 243, 276, 344, 442
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	5 cut(s)	54, 140, 201, 296, 362
HapII	CCGG	3 cut(s)	93, 288, 414
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	253, 295
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	3 cut(s)	93, 288, 414
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	4 cut(s)	16, 33, 79, 283
Hpy188III	TCNNGA	2 cut(s)	155, 194
Hpy99I	CGWCG	3 cut(s)	37, 40, 343
HpyAV	CCTTC	3 cut(s)	58, 195, 265
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	2 cut(s)	159, 379
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 140, 149, 284, 293, 302
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	2 cut(s)	159, 379
Hsp92II	CATG	2 cut(s)	253, 295
HspAI	GCGC	1 cut(s)	449
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	1 cut(s)	312
LpnPI	CCDG	9 cut(s)	30, 86, 97, 106, 179, 301, 344, 427, 451
Lsp1109I	GCAGC	2 cut(s)	36, 53
LweI	GCATC	2 cut(s)	274, 292
MaeI	CTAG	1 cut(s)	478
MaeII	ACGT	2 cut(s)	159, 379
MaeIII	GTNAC	2 cut(s)	5, 155
MalI	GATC	1 cut(s)	314
MbiI	CCGCTC	1 cut(s)	393
MboI	GATC	1 cut(s)	312
MboII	GAAGA	2 cut(s)	29, 479
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	2 cut(s)	56, 57
MnlI	CCTC	7 cut(s)	119, 130, 190, 212, 252, 400, 439
MroNI	GCCGGC	1 cut(s)	287
MseI	TTAA	2 cut(s)	234, 330
MspA1I	CMGCKG	2 cut(s)	310, 441
MspI	CCGG	3 cut(s)	93, 288, 414
MspR9I	CCNGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	390
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	6 cut(s)	93, 140, 149, 284, 293, 302
NaeI	GCCGGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	312
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	253, 295
NmeAIII	GCCGAG	3 cut(s)	96, 160, 282
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	253
PciI	ACATGT	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PctI	GAATGC	1 cut(s)	390
PdiI	GCCGGC	1 cut(s)	289
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	9 cut(s)	26, 43, 56, 142, 145, 244, 277, 345, 443
PleI	GAGTC	1 cut(s)	184
PmaCI	CACGTG	1 cut(s)	380
PmlI	CACGTG	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	380
PscI	ACATGT	1 cut(s)	249
PspCI	CACGTG	1 cut(s)	380
PspPI	GGNCC	2 cut(s)	103, 199
PvuII	CAGCTG	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	234, 330
SatI	GCNGC	9 cut(s)	25, 42, 55, 141, 144, 243, 276, 344, 442
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	2 cut(s)	103, 199
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	5 cut(s)	162, 263, 312, 338, 382
SfaNI	GCATC	2 cut(s)	274, 292
SinI	GGWCC	1 cut(s)	103
SspMI	CTAG	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	2 cut(s)	162, 382
TaqI	TCGA	2 cut(s)	188, 263
TauI	GCSGC	7 cut(s)	57, 143, 146, 245, 278, 346, 444
Tru1I	TTAA	2 cut(s)	234, 330
Tru9I	TTAA	2 cut(s)	234, 330
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	24, 41
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	103
XceI	RCATGY	1 cut(s)	253
XspI	CTAG	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.