Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

44624928 .. 44625849

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G546100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGTTACAGTTCAGAGGAAAGCAGCAGCAGCCCGGGCACTGGACAACGGAAGTTCAAGGGGGTGCGCCAAAGAAAATGGGGCAAGTGGGTGTCTGAAATCCGCGTCCCGGGGACGCAGGACCGGCTCTGGTTAGGATCTTTCTCGTCCCCGGAGGCGGCCGCGGTGGCTCGGGACGTTGCGTATTATTGCCTACGTAGGCCGTCGACCTTGGAAGGGCTTAACTTTCCCTTGGTGTTGCCGTCTTCAGTTCATGCTGATATGTCGCCGAGGTCTATACAGAAGGCAGCTTCGGATGCCGGCATGGCAGTTGATGCTCAGTTGGTGGCTAACAGATCACCGCAGGCAGGTGGCAGGCAGAGCAACAATGGAAGTCATGGGGTTGAGAGTGAGGTTTGGGAAGACATGGGAGAGAGTTCTAGGACCAACTGCGGAGGGCATATGGGATTTGGCAGTGGGTGTGAGGATTTGAGCATCTCCATTGAAGATTATGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

167

Amino Acids

17.89

Weight (kDa)

5.62

Isoelectric Point (pI)

72.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	2 cut(s)	105, 164
AciI	CCGC	6 cut(s)	103, 158, 162, 164, 341, 432
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	231
AfiI	CCNNNNNNNGG	5 cut(s)	41, 109, 157, 216, 347
AgsI	TTSAA	2 cut(s)	58, 485
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
AlwI	GGATC	1 cut(s)	145
Ama87I	CYCGRG	3 cut(s)	34, 109, 171
AoxI	GGCC	2 cut(s)	159, 200
ApeKI	GCWGC	4 cut(s)	24, 27, 30, 287
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	121, 423
AsuC2I	CCSGG	5 cut(s)	35, 36, 110, 111, 152
AsuHPI	GGTGA	1 cut(s)	330
AvaI	CYCGRG	3 cut(s)	34, 109, 171
AvaII	GGWCC	2 cut(s)	121, 423
BaeGI	GKGCMC	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	237, 408
BbvI	GCAGC	4 cut(s)	36, 39, 42, 299
BceAI	ACGGC	2 cut(s)	187, 226
BcnI	CCSGG	5 cut(s)	35, 36, 110, 111, 152
BfaI	CTAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	338
BglI	GCCNNNNNGGC	2 cut(s)	167, 305
BisI	GCNGC	6 cut(s)	25, 28, 31, 159, 162, 288
BlsI	GCNGC	6 cut(s)	26, 29, 32, 160, 163, 289
Bme1390I	CCNGG	5 cut(s)	35, 36, 110, 111, 152
Bme18I	GGWCC	2 cut(s)	121, 423
BmeT110I	CYCGRG	3 cut(s)	34, 109, 171
BmgT120I	GGNCC	2 cut(s)	121, 423
BmrFI	CCNGG	5 cut(s)	35, 36, 110, 111, 152
BmsI	GCATC	3 cut(s)	286, 304, 483
BpiI	GAAGAC	2 cut(s)	237, 408
BpuMI	CCSGG	5 cut(s)	35, 36, 110, 111, 152
BsaAI	YACGTR	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	8 cut(s)	34, 109, 110, 150, 162, 210, 231, 269
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 109, 157, 216, 347
Bse118I	RCCGGY	2 cut(s)	123, 299
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	492
BseDI	CCNNGG	8 cut(s)	34, 109, 110, 150, 162, 210, 231, 269
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	5 cut(s)	41, 109, 157, 216, 347
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	41
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	4 cut(s)	36, 39, 42, 299
Bsh1236I	CGCG	2 cut(s)	105, 164
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	161, 202
BsiEI	CGRYCG	1 cut(s)	162
BsiHKCI	CYCGRG	3 cut(s)	34, 109, 171
BsiSI	CCGG	5 cut(s)	35, 110, 124, 152, 300
BslFI	GGGAC	4 cut(s)	92, 127, 133, 188
BslI	CCNNNNNNNGG	5 cut(s)	41, 109, 157, 216, 347
BsmFI	GGGAC	4 cut(s)	92, 127, 133, 188
BsnI	GGCC	2 cut(s)	161, 202
BsoBI	CYCGRG	3 cut(s)	34, 109, 171
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	137, 335, 493
BspACI	CCGC	6 cut(s)	103, 158, 162, 164, 341, 432
BspANI	GGCC	2 cut(s)	161, 202
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	2 cut(s)	105, 164
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	145
BsrFI	RCCGGY	2 cut(s)	123, 299
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	2 cut(s)	123, 299
BssECI	CCNNGG	8 cut(s)	34, 109, 110, 150, 162, 210, 231, 269
BssMI	GATC	3 cut(s)	137, 335, 493
BssT1I	CCWWGG	2 cut(s)	210, 231
Bst4CI	ACNGT	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	301, 345, 356
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	2 cut(s)	105, 164
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	3 cut(s)	140, 338, 496
BstMBI	GATC	3 cut(s)	137, 335, 493
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 36, 124, 167, 296, 305, 314, 360
BstSCI	CCNGG	5 cut(s)	33, 34, 108, 109, 150
BstSLI	GKGCMC	1 cut(s)	41
BstSNI	TACGTA	1 cut(s)	197
BstUI	CGCG	2 cut(s)	105, 164
BstV1I	GCAGC	4 cut(s)	36, 39, 42, 299
BstV2I	GAAGAC	2 cut(s)	237, 408
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	161, 202
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	39, 460
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	3 cut(s)	301, 345, 356
CciNI	GCGGCCGC	1 cut(s)	159
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	2 cut(s)	123, 299
Cfr13I	GGNCC	2 cut(s)	121, 423
Cfr42I	CCGCGG	1 cut(s)	165
Cfr9I	CCCGGG	2 cut(s)	34, 109
CseI	GACGC	2 cut(s)	94, 124
CviAII	CATG	4 cut(s)	254, 304, 377, 406
CviJI	RGCY	8 cut(s)	33, 127, 161, 170, 202, 220, 290, 329
CviKI_1	RGCY	8 cut(s)	33, 127, 161, 170, 202, 220, 290, 329
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	3 cut(s)	139, 337, 495
DpnII	GATC	3 cut(s)	137, 335, 493
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	159
Eco105I	TACGTA	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	210, 231
Eco47I	GGWCC	2 cut(s)	121, 423
Eco52I	CGGCCG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	3 cut(s)	34, 109, 171
EcoT14I	CCWWGG	2 cut(s)	210, 231
ErhI	CCWWGG	2 cut(s)	210, 231
FaeI	CATG	4 cut(s)	257, 307, 380, 409
FaiI	YATR	9 cut(s)	255, 263, 278, 305, 378, 407, 441, 443, 492
FaqI	GGGAC	4 cut(s)	92, 127, 133, 188
FatI	CATG	4 cut(s)	253, 303, 376, 405
FauNDI	CATATG	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	6 cut(s)	25, 28, 31, 159, 162, 288
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	6 cut(s)	25, 28, 31, 159, 162, 288
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	6 cut(s)	25, 28, 31, 159, 162, 288
HaeIII	GGCC	2 cut(s)	161, 202
HapII	CCGG	5 cut(s)	35, 110, 124, 152, 300
HgaI	GACGC	2 cut(s)	94, 124
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	257, 307, 380, 409
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HpaII	CCGG	5 cut(s)	35, 110, 124, 152, 300
HphI	GGTGA	1 cut(s)	330
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	16, 97, 295
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	209, 277
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	2 cut(s)	177, 196
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 36, 124, 167, 296, 305, 314, 360
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	2 cut(s)	177, 196
Hsp92II	CATG	4 cut(s)	257, 307, 380, 409
HspAI	GCGC	1 cut(s)	67
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
KspI	CCGCGG	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	137, 335, 493
Lsp1109I	GCAGC	4 cut(s)	36, 39, 42, 299
LweI	GCATC	3 cut(s)	286, 304, 483
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	2 cut(s)	177, 196
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	139, 337, 495
MboI	GATC	3 cut(s)	137, 335, 493
MboII	GAAGA	3 cut(s)	237, 413, 497
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	41
MnlI	CCTC	6 cut(s)	10, 148, 264, 385, 428, 457
MroNI	GCCGGC	1 cut(s)	299
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	5 cut(s)	35, 110, 124, 152, 300
MspR9I	CCNGG	5 cut(s)	35, 36, 110, 111, 152
MvnI	CGCG	2 cut(s)	105, 164
MwoI	GCNNNNNNNGC	8 cut(s)	30, 36, 124, 167, 296, 305, 314, 360
NaeI	GCCGGC	1 cut(s)	301
NciI	CCSGG	5 cut(s)	35, 36, 110, 111, 152
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	3 cut(s)	137, 335, 493
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	4 cut(s)	257, 307, 380, 409
NmeAIII	GCCGAG	1 cut(s)	294
NotI	GCGGCCGC	1 cut(s)	159
PaqCI	CACCTGC	1 cut(s)	338
PdiI	GCCGGC	1 cut(s)	301
PkrI	GCNGC	6 cut(s)	26, 29, 32, 160, 163, 289
Ppu21I	YACGTR	1 cut(s)	197
PspPI	GGNCC	2 cut(s)	121, 423
PsuI	RGATCY	1 cut(s)	137
SacII	CCGCGG	1 cut(s)	165
SalI	GTCGAC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	6 cut(s)	25, 28, 31, 159, 162, 288
Sau3AI	GATC	3 cut(s)	137, 335, 493
Sau96I	GGNCC	2 cut(s)	121, 423
ScrFI	CCNGG	5 cut(s)	35, 36, 110, 111, 152
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	7 cut(s)	180, 199, 212, 275, 292, 352, 396
SfaNI	GCATC	3 cut(s)	286, 304, 483
Sfr303I	CCGCGG	1 cut(s)	165
SgrBI	CCGCGG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	121, 423
SmaI	CCCGGG	2 cut(s)	36, 111
SnaBI	TACGTA	1 cut(s)	197
SrfI	GCCCGGGC	1 cut(s)	36
SsiI	CCGC	6 cut(s)	103, 158, 162, 164, 341, 432
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	5 cut(s)	33, 34, 108, 109, 150
StyI	CCWWGG	2 cut(s)	210, 231
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	2 cut(s)	180, 199
TaqI	TCGA	1 cut(s)	206
TauI	GCSGC	2 cut(s)	161, 164
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	46, 460
TseI	GCWGC	4 cut(s)	24, 27, 30, 287
TspDTI	ATGAA	1 cut(s)	242
TspGWI	ACGGA	1 cut(s)	64
TspMI	CCCGGG	2 cut(s)	34, 109
TspRI	CASTG	2 cut(s)	46, 460
VpaK11BI	GGWCC	2 cut(s)	121, 423
XmaI	CCCGGG	2 cut(s)	34, 109
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.