Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

27728666 .. 27729199

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1214400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGTTACAGTTCGGAAGAAAGCGGGAGTACTCCATGCAGCACATCAAACAGAAAACTCAAGGGGGTGCGCCAACGAAAATGGGGCAAGTGGGTGTCCGAAATCCGAGTTCCGGGGACCCGAGACCGGCTTTGGTTAGGCACCTTCTGCACCGCAGAGGCGGCAGCGGTGGCTCGAGACGTTGGGTATTATTGCTTGCGTCGACCTTCCACGTTGGAAGGCCTTAACTTCCCGTTGATGTTACCGTCTTGTGTGAGGGATGATATGTCGCCCAGGTCGGTGCAGAAGGCAGCTTCGGATGCTGGCATGGCAGTGGATGCTCAGCTGATTGTCAACATGTCCCCGCCGCCGCAGCCAGCTGGAACTGGAAGCAATGCGGTTGAGACGACTGAGTTTTGGGAAAATGGTTATGTGGGAGAGACTTCGACTTTTACTTCTACTTCTATGAGCAGCTGGGGAGGAGGACATGGGTTTGGCAATGGCGGTGATCATCAGGGGTGCTTGAGCATTTCCGTTGAAGATTATGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

178

Amino Acids

19.06

Weight (kDa)

5.39

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	19 - 56	8.3e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	202
AciI	CCGC	9 cut(s)	24, 153, 161, 167, 344, 347, 350, 377, 483
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	112, 126
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	4 cut(s)	293, 325, 359, 453
AluI	AGCT	4 cut(s)	293, 325, 359, 453
Alw26I	GTCTC	4 cut(s)	117, 171, 377, 413
Ama87I	CYCGRG	2 cut(s)	120, 174
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	5 cut(s)	39, 164, 290, 352, 450
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	497
AvaI	CYCGRG	2 cut(s)	120, 174
AvaII	GGWCC	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	140
BbvI	GCAGC	5 cut(s)	51, 176, 302, 364, 462
BciT130I	CCWGG	1 cut(s)	274
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	4 cut(s)	117, 171, 377, 413
BisI	GCNGC	8 cut(s)	40, 162, 165, 291, 347, 350, 353, 451
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	8 cut(s)	41, 163, 166, 292, 348, 351, 354, 452
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	114, 274
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	2 cut(s)	120, 174
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	3 cut(s)	118, 119, 142
BmrFI	CCNGG	2 cut(s)	114, 274
BmsI	GCATC	2 cut(s)	289, 307
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	2 cut(s)	44, 523
BpuMI	CCSGG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	113, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 126
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	2 cut(s)	379, 484
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	113, 272
BseGI	GGATG	3 cut(s)	265, 304, 322
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	112, 126
BseMI	GCAATG	2 cut(s)	379, 484
BseMII	CTCAG	2 cut(s)	335, 381
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	5 cut(s)	51, 176, 302, 364, 462
BseYI	CCCAGC	1 cut(s)	453
BsgI	GTGCAG	2 cut(s)	133, 302
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	140
BsiHKCI	CYCGRG	2 cut(s)	120, 174
BsiSI	CCGG	2 cut(s)	113, 127
BslFI	GGGAC	2 cut(s)	130, 325
BslI	CCNNNNNNNGG	2 cut(s)	112, 126
BsmAI	GTCTC	4 cut(s)	117, 171, 377, 413
BsmBI	CGTCTC	2 cut(s)	171, 377
BsmFI	GGGAC	2 cut(s)	130, 325
BsnI	GGCC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	2 cut(s)	120, 174
Bsp143I	GATC	2 cut(s)	487, 526
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	9 cut(s)	24, 153, 161, 167, 344, 347, 350, 377, 483
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	334, 382
BspLI	GGNNCC	3 cut(s)	118, 119, 142
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	379, 484
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	113, 272
BssMI	GATC	2 cut(s)	487, 526
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	11, 246
BstAPI	GCANNNNNTGC	2 cut(s)	147, 317
BstC8I	GCNNGC	3 cut(s)	197, 304, 357
BstDEI	CTNAG	2 cut(s)	321, 390
BstF5I	GGATG	3 cut(s)	265, 304, 322
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	490, 529
BstMAI	GTCTC	4 cut(s)	117, 171, 377, 413
BstMBI	GATC	2 cut(s)	487, 526
BstMWI	GCNNNNNNNGC	7 cut(s)	147, 161, 170, 299, 308, 317, 352
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	2 cut(s)	112, 272
BstV1I	GCAGC	5 cut(s)	51, 176, 302, 364, 462
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	265, 304, 322
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	197, 304, 357
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	4 cut(s)	36, 307, 337, 467
CviJI	RGCY	8 cut(s)	130, 173, 222, 293, 325, 355, 359, 453
CviKI_1	RGCY	8 cut(s)	130, 173, 222, 293, 325, 355, 359, 453
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	2 cut(s)	321, 390
DpnI	GATC	2 cut(s)	489, 528
DpnII	GATC	2 cut(s)	487, 526
Eco147I	AGGCCT	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	117
Eco88I	CYCGRG	2 cut(s)	120, 174
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	272
Esp3I	CGTCTC	2 cut(s)	171, 377
FaeI	CATG	4 cut(s)	39, 310, 340, 470
FaiI	YATR	8 cut(s)	37, 266, 308, 338, 411, 446, 468, 525
FaqI	GGGAC	2 cut(s)	130, 325
FatI	CATG	4 cut(s)	35, 306, 336, 466
FauI	CCCGC	2 cut(s)	17, 351
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	8 cut(s)	40, 162, 165, 291, 347, 350, 353, 451
FokI	GGATG	3 cut(s)	272, 311, 329
Fsp4HI	GCNGC	8 cut(s)	40, 162, 165, 291, 347, 350, 353, 451
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	8 cut(s)	40, 162, 165, 291, 347, 350, 353, 451
GsaI	CCCAGC	1 cut(s)	457
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	2 cut(s)	113, 127
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	4 cut(s)	39, 310, 340, 470
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	2 cut(s)	203, 334
HindII	GTYRAC	2 cut(s)	203, 334
HpaII	CCGG	2 cut(s)	113, 127
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	2 cut(s)	203, 334
Hpy188I	TCNGA	4 cut(s)	16, 100, 107, 298
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	2 cut(s)	203, 334
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	4 cut(s)	154, 212, 216, 280
HpyCH4III	ACNGT	2 cut(s)	11, 246
HpyCH4IV	ACGT	2 cut(s)	180, 212
HpyCH4V	TGCA	3 cut(s)	39, 150, 283
HpyF10VI	GCNNNNNNNGC	7 cut(s)	147, 161, 170, 299, 308, 317, 352
HpyF3I	CTNAG	2 cut(s)	321, 390
HpySE526I	ACGT	2 cut(s)	180, 212
Hsp92II	CATG	4 cut(s)	39, 310, 340, 470
HspAI	GCGC	1 cut(s)	70
KflI	GGGWCCC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	487, 526
Lsp1109I	GCAGC	5 cut(s)	51, 176, 302, 364, 462
LweI	GCATC	2 cut(s)	289, 307
MaeII	ACGT	2 cut(s)	180, 212
MaeIII	GTNAC	2 cut(s)	5, 240
MalI	GATC	2 cut(s)	489, 528
MboI	GATC	2 cut(s)	487, 526
MboII	GAAGA	2 cut(s)	29, 530
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	4 cut(s)	151, 249, 452, 455
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	4 cut(s)	167, 325, 359, 453
MspI	CCGG	2 cut(s)	113, 127
MspR9I	CCNGG	2 cut(s)	114, 274
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	7 cut(s)	147, 161, 170, 299, 308, 317, 352
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	2 cut(s)	487, 526
NlaIII	CATG	4 cut(s)	39, 310, 340, 470
NlaIV	GGNNCC	3 cut(s)	118, 119, 142
NspI	RCATGY	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	222
PciI	ACATGT	1 cut(s)	336
PkrI	GCNGC	8 cut(s)	41, 163, 166, 292, 348, 351, 354, 452
PpuMI	RGGWCCY	1 cut(s)	117
PscI	ACATGT	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	118, 119, 142
PspPI	GGNCC	1 cut(s)	117
PspPPI	RGGWCCY	1 cut(s)	117
PvuII	CAGCTG	3 cut(s)	325, 359, 453
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	311
SalI	GTCGAC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	8 cut(s)	40, 162, 165, 291, 347, 350, 353, 451
Sau3AI	GATC	2 cut(s)	487, 526
Sau96I	GGNCC	1 cut(s)	117
ScaI	AGTACT	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	114, 274
SetI	ASST	9 cut(s)	146, 183, 208, 215, 278, 295, 327, 361, 455
SfaNI	GCATC	2 cut(s)	289, 307
Sfr274I	CTCGAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	3 cut(s)	59, 174, 502
SmoI	CTYRAG	3 cut(s)	59, 174, 502
SseBI	AGGCCT	1 cut(s)	222
SsiI	CCGC	9 cut(s)	24, 153, 161, 167, 344, 347, 350, 377, 483
StuI	AGGCCT	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	112, 272
TaaI	ACNGT	2 cut(s)	11, 246
TaiI	ACGT	2 cut(s)	183, 215
TaqI	TCGA	3 cut(s)	175, 202, 425
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	3 cut(s)	164, 349, 352
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	5 cut(s)	39, 164, 290, 352, 450
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	117
XceI	RCATGY	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	202
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.