Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Reverse (-)

58185017 .. 58185307

Gene Structure 291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG413800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAGTTACAGTTCAGAAGACAACAGCAGTCTGATGACGGCCAGGAACGGCCGTAAGTTGAAGGGAGTGTGTCAAAGAAAATGGGACAAGTGGGTGTCGGAAATCCGCGTCCTCGGCACGCAGGACCGCCTCTGGCTCAGCTCTTTCTCCAATACTGAGGCCGCCGCCGTGGCTTGCGACGTTGCTTACTATTGCTTGCGTAAGCATTGGACTTTGGAAAGCCTCAACTTTCCTACAATCTTGCCGTGTTCGGTTAATCAAGCGGCGGACATGTTGCTGAGGTTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

96

Amino Acids

10.96

Weight (kDa)

8.8

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	19 - 68	5.8e-07	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	6 cut(s)	106, 127, 162, 165, 263, 266
AcoI	YGGCCR	2 cut(s)	39, 49
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
AoxI	GGCC	3 cut(s)	39, 49, 159
AspS9I	GGNCC	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	24
BbvCI	CCTCAGC	1 cut(s)	278
BceAI	ACGGC	5 cut(s)	36, 54, 64, 152, 229
BciT130I	CCWGG	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	162, 165, 264
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	3 cut(s)	163, 166, 265
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	112, 168
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	2 cut(s)	112, 168
BseMII	CTCAG	3 cut(s)	147, 151, 269
BseX3I	CGGCCG	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	3 cut(s)	41, 51, 161
BsiEI	CGRYCG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	41, 51, 161
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	6 cut(s)	106, 127, 162, 165, 263, 266
BspANI	GGCC	3 cut(s)	41, 51, 161
BspCNI	CTCAG	3 cut(s)	148, 150, 270
BspFNI	CGCG	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	112, 168
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	119, 175, 197
BstDEI	CTNAG	3 cut(s)	137, 156, 278
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	108
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 170
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	24
BstZI	CGGCCG	1 cut(s)	49
BsuRI	GGCC	3 cut(s)	41, 51, 161
BtgI	CCRYGG	1 cut(s)	168
Cac8I	GCNNGC	3 cut(s)	119, 175, 197
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	97
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	7 cut(s)	41, 51, 136, 141, 161, 173, 222
CviKI_1	RGCY	7 cut(s)	41, 51, 136, 141, 161, 173, 222
DdeI	CTNAG	3 cut(s)	137, 156, 278
EaeI	YGGCCR	2 cut(s)	39, 49
EagI	CGGCCG	1 cut(s)	49
EciI	GGCGGA	1 cut(s)	281
EclXI	CGGCCG	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	274
FaiI	YATR	2 cut(s)	272, 289
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	162, 165, 264
Fsp4HI	GCNGC	3 cut(s)	162, 165, 264
GluI	GCNGC	3 cut(s)	162, 165, 264
HaeIII	GGCC	3 cut(s)	41, 51, 161
HgaI	GACGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	274
Hpy188I	TCNGA	3 cut(s)	16, 33, 100
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 170
HpyF3I	CTNAG	3 cut(s)	137, 156, 278
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	274
LpnPI	CCDG	4 cut(s)	28, 55, 107, 118
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	122, 140, 151, 233, 273
MseI	TTAA	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	114, 170
NlaIII	CATG	1 cut(s)	274
NmeAIII	GCCGAG	1 cut(s)	93
NspI	RCATGY	1 cut(s)	274
PciI	ACATGT	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	163, 166, 265
PscI	ACATGT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	3 cut(s)	162, 165, 264
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	3 cut(s)	143, 183, 284
SinI	GGWCC	1 cut(s)	124
SsiI	CCGC	6 cut(s)	106, 127, 162, 165, 263, 266
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	183
TauI	GCSGC	3 cut(s)	164, 167, 266
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	124
XceI	RCATGY	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.