Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Reverse (-)

23967454 .. 23968327

Gene Structure 874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGTTACAGTTCAGAAGATAGCAGCAGTCCGACGGCCGGGAACGGCAGGAAATTGAAGGGAGTGCGTCAGAGAAAATGGGGCAAGTGGGTGTCGGAGATCCGCGTCCCCGGCACACAGGACCGCCTCTGGCTCGGCTCTTTCTCCACCGCCGAGGCGGCCGCGGTGGCTCGTGACGTTGCTTACTATTGCTTACGTAAGCCTTCGACTCTGGAGGGGCTAAACTTTCCTACAATCTTGCCGTGTTCCGTTAACCAGGCGGCGGACATGTCGCCGAGGTCGATACAGAAAGCGGCGTCGGATGCCGGCATGGCAGTTGATGCTCAGCTGATCAATGCTAACAGTAACAGTAACAGCTCGTCGCAGCAGAACTGGAGACAGGCCAACGGAAGTGAGCCACGTGTAATGCAGACAGGTGGGAGTTGGGAGGACGGCGGTGAGAGTTCAACCACTAACAGCGGCGAGGCGCTGAGCATTTCCATTGAAGACTATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

166

Amino Acids

17.7

Weight (kDa)

5.5

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	18 - 61	3.4e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	105, 164
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	2 cut(s)	36, 159
AcvI	CACGTG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	38, 262
AflIII	ACRYGT	2 cut(s)	267, 400
AgsI	TTSAA	3 cut(s)	58, 447, 485
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	2 cut(s)	328, 357
AluI	AGCT	2 cut(s)	328, 357
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	3 cut(s)	36, 159, 381
ApeKI	GCWGC	2 cut(s)	24, 364
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	121
AsuC2I	CCSGG	2 cut(s)	40, 111
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	171
BbrPI	CACGTG	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	36, 376
BceAI	ACGGC	4 cut(s)	51, 61, 226, 448
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	40, 111
BcoDI	GTCTC	1 cut(s)	370
BfmI	CTRYAG	1 cut(s)	494
BfoI	RGCGCY	1 cut(s)	470
BglI	GCCNNNNNGGC	3 cut(s)	158, 167, 311
BisI	GCNGC	7 cut(s)	25, 159, 162, 261, 294, 365, 460
BlpI	GCTNAGC	2 cut(s)	324, 470
BlsI	GCNGC	7 cut(s)	26, 160, 163, 262, 295, 366, 461
Bme1390I	CCNGG	3 cut(s)	40, 111, 257
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	121
BmrFI	CCNGG	3 cut(s)	40, 111, 257
BmsI	GCATC	2 cut(s)	292, 310
BpiI	GAAGAC	1 cut(s)	492
BpmI	CTGGAG	2 cut(s)	233, 394
Bpu1102I	GCTNAGC	2 cut(s)	324, 470
BpuMI	CCSGG	2 cut(s)	40, 111
BsaAI	YACGTR	2 cut(s)	197, 401
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	4 cut(s)	109, 153, 162, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 262
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	4 cut(s)	109, 153, 162, 275
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	38, 262
BseMII	CTCAG	2 cut(s)	338, 461
BseNI	ACTGG	1 cut(s)	377
BseX3I	CGGCCG	2 cut(s)	36, 159
BseXI	GCAGC	2 cut(s)	36, 376
Bsh1236I	CGCG	2 cut(s)	105, 164
Bsh1285I	CGRYCG	2 cut(s)	39, 162
BshFI	GGCC	3 cut(s)	38, 161, 383
BsiEI	CGRYCG	2 cut(s)	39, 162
BsiSI	CCGG	3 cut(s)	39, 111, 306
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	38, 262
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	3 cut(s)	38, 161, 383
Bsp143I	GATC	2 cut(s)	99, 330
Bsp1720I	GCTNAGC	2 cut(s)	324, 470
BspANI	GGCC	3 cut(s)	38, 161, 383
BspCNI	CTCAG	2 cut(s)	337, 462
BspFNI	CGCG	2 cut(s)	105, 164
BspPI	GGATC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	4 cut(s)	109, 153, 162, 275
BssMI	GATC	2 cut(s)	99, 330
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	3 cut(s)	11, 344, 350
BstACI	GRCGYC	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstBAI	YACGTR	2 cut(s)	197, 401
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	324, 470
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	2 cut(s)	105, 164
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	2 cut(s)	102, 333
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	2 cut(s)	99, 330
BstMCI	CGRYCG	2 cut(s)	39, 162
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 158, 167, 302, 311, 320
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	38, 109, 255
BstSFI	CTRYAG	1 cut(s)	494
BstSNI	TACGTA	1 cut(s)	197
BstUI	CGCG	2 cut(s)	105, 164
BstV1I	GCAGC	2 cut(s)	36, 376
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BstZI	CGGCCG	2 cut(s)	36, 159
BsuRI	GGCC	3 cut(s)	38, 161, 383
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	307
CciNI	GCGGCCGC	1 cut(s)	159
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	121
Cfr42I	CCGCGG	1 cut(s)	165
CseI	GACGC	3 cut(s)	56, 94, 285
CviAII	CATG	2 cut(s)	268, 310
DdeI	CTNAG	2 cut(s)	324, 470
DpnI	GATC	2 cut(s)	101, 332
DpnII	GATC	2 cut(s)	99, 330
EaeI	YGGCCR	2 cut(s)	36, 159
EagI	CGGCCG	2 cut(s)	36, 159
EciI	GGCGGA	1 cut(s)	278
EclXI	CGGCCG	2 cut(s)	36, 159
Eco105I	TACGTA	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	121
Eco52I	CGGCCG	2 cut(s)	36, 159
Eco72I	CACGTG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	271, 313
FaiI	YATR	2 cut(s)	269, 311
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	267, 309
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	7 cut(s)	25, 159, 162, 261, 294, 365, 460
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	7 cut(s)	25, 159, 162, 261, 294, 365, 460
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	7 cut(s)	25, 159, 162, 261, 294, 365, 460
GsuI	CTGGAG	2 cut(s)	233, 394
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	3 cut(s)	38, 161, 383
HapII	CCGG	3 cut(s)	39, 111, 306
HgaI	GACGC	3 cut(s)	56, 94, 285
HhaI	GCGC	1 cut(s)	469
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	271, 313
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	208
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	3 cut(s)	39, 111, 306
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	5 cut(s)	16, 33, 72, 97, 301
Hpy188III	TCNNGA	2 cut(s)	173, 212
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	3 cut(s)	37, 301, 364
HpyAV	CCTTC	2 cut(s)	52, 213
HpyCH4III	ACNGT	3 cut(s)	11, 344, 350
HpyCH4IV	ACGT	3 cut(s)	177, 196, 400
HpyCH4V	TGCA	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 158, 167, 302, 311, 320
HpyF3I	CTNAG	2 cut(s)	324, 470
HpySE526I	ACGT	3 cut(s)	177, 196, 400
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	271, 313
HspAI	GCGC	1 cut(s)	467
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	330
KspAI	GTTAAC	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	99, 330
Lsp1109I	GCAGC	2 cut(s)	36, 376
LweI	GCATC	2 cut(s)	292, 310
MaeII	ACGT	3 cut(s)	177, 196, 400
MaeIII	GTNAC	4 cut(s)	5, 173, 344, 350
MalI	GATC	2 cut(s)	101, 332
MboI	GATC	2 cut(s)	99, 330
MboII	GAAGA	2 cut(s)	29, 497
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	3 cut(s)	56, 75, 279
MnlI	CCTC	6 cut(s)	137, 148, 208, 270, 421, 457
MroNI	GCCGGC	1 cut(s)	305
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	3 cut(s)	164, 328, 459
MspI	CCGG	3 cut(s)	39, 111, 306
MspR9I	CCNGG	3 cut(s)	40, 111, 257
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	2 cut(s)	105, 164
MwoI	GCNNNNNNNGC	6 cut(s)	111, 158, 167, 302, 311, 320
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	2 cut(s)	40, 111
NdeII	GATC	2 cut(s)	99, 330
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	2 cut(s)	271, 313
NmeAIII	GCCGAG	3 cut(s)	114, 178, 300
NmuCI	GTSAC	1 cut(s)	173
NotI	GCGGCCGC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	271
PciI	ACATGT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PdiI	GCCGGC	1 cut(s)	307
PkrI	GCNGC	7 cut(s)	26, 160, 163, 262, 295, 366, 461
PleI	GAGTC	1 cut(s)	202
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	202
Ppu21I	YACGTR	2 cut(s)	197, 401
PscI	ACATGT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	255
PspCI	CACGTG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	99
PvuII	CAGCTG	1 cut(s)	328
SacII	CCGCGG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	7 cut(s)	25, 159, 162, 261, 294, 365, 460
Sau3AI	GATC	2 cut(s)	99, 330
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	40, 111, 257
SetI	ASST	7 cut(s)	180, 199, 281, 330, 359, 403, 418
SfaNI	GCATC	2 cut(s)	292, 310
SfcI	CTRYAG	1 cut(s)	494
Sfr303I	CCGCGG	1 cut(s)	165
SgrBI	CCGCGG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	121
SnaBI	TACGTA	1 cut(s)	197
Sse9I	AATT	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	38, 109, 255
TaaI	ACNGT	3 cut(s)	11, 344, 350
TaiI	ACGT	3 cut(s)	180, 199, 403
TaqI	TCGA	2 cut(s)	206, 281
TasI	AATT	1 cut(s)	53
TauI	GCSGC	5 cut(s)	161, 164, 263, 296, 462
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	24, 364
Tsp45I	GTSAC	1 cut(s)	173
TspGWI	ACGGA	2 cut(s)	238, 402
VpaK11BI	GGWCC	1 cut(s)	121
XceI	RCATGY	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.