Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

26938369 .. 26939267

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGATTCAAGAGACACCGGAGAAACTGACCAGAGCAAGTACAAAGGTATCCGTCGTCGGAAATGGGGAAAATGGGTATCAGAGATTCGTGTCCCGGGAACTCGTCAACGTCTCTGGTTAGGCTCTTTCTCCACCGCAGAAGGCGCTGCCGTAGCCCACGACGTCGCTTTTTACTGCTTGCACCGACCATCTTCCCTCGACGACGAATCTTTTAACTTCCCTCACTTACTTACAACCTCCCTCGCCTCCAATATATCTCCTAAGTCCATCCAAAAAGCTGCTTCCGACGCCGGCATGGCCGTGGACGCCGGATTCCATGGTGCTGTGTCTGGGAGTGGTGGTTGTGAAGAGAGATCTTCCATGGCGAATATGGAGGAGGAGGACAAACTTAGTATCTCCGTGTATGATTATCTTGAAGACGATCTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

143

Amino Acids

15.7

Weight (kDa)

5.16

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	12 - 60	2.8e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AciI	CCGC	1 cut(s)	135
AcoI	YGGCCR	1 cut(s)	297
AcyI	GRCGYC	3 cut(s)	162, 288, 306
AfaI	GTAC	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	9, 416
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	6, 116
Ama87I	CYCGRG	1 cut(s)	94
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	146, 278
AspLEI	GCGC	1 cut(s)	146
AsuC2I	CCSGG	2 cut(s)	95, 96
AvaI	CYCGRG	1 cut(s)	94
BaeI	ACNNNNGTAYC	2 cut(s)	31, 64
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	133, 265
BccI	CCATC	2 cut(s)	196, 275
BceAI	ACGGC	2 cut(s)	134, 284
BciVI	GTATCC	1 cut(s)	59
BcnI	CCSGG	2 cut(s)	95, 96
BcoDI	GTCTC	2 cut(s)	6, 116
BfoI	RGCGCY	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	59
BglI	GCCNNNNNGGC	1 cut(s)	296
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	2 cut(s)	147, 279
BlsI	GCNGC	2 cut(s)	148, 280
Bme1390I	CCNGG	2 cut(s)	95, 96
BmeT110I	CYCGRG	1 cut(s)	94
BmrFI	CCNGG	2 cut(s)	95, 96
BpiI	GAAGAC	1 cut(s)	423
BpuMI	CCSGG	2 cut(s)	95, 96
BsaHI	GRCGYC	3 cut(s)	162, 288, 306
BsaJI	CCNNGG	4 cut(s)	94, 300, 316, 360
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bse118I	RCCGGY	1 cut(s)	290
BseDI	CCNNGG	4 cut(s)	94, 300, 316, 360
BseGI	GGATG	1 cut(s)	267
BseRI	GAGGAG	2 cut(s)	389, 392
BseXI	GCAGC	2 cut(s)	133, 265
BshFI	GGCC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	4 cut(s)	18, 95, 291, 309
BslFI	GGGAC	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	6, 116
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	353, 421
Bsp19I	CCATGG	2 cut(s)	316, 360
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	4 cut(s)	94, 300, 316, 360
BssMI	GATC	2 cut(s)	353, 421
BssNI	GRCGYC	3 cut(s)	162, 288, 306
BssT1I	CCWWGG	2 cut(s)	316, 360
Bst6I	CTCTTC	1 cut(s)	342
BstACI	GRCGYC	3 cut(s)	162, 288, 306
BstC8I	GCNNGC	2 cut(s)	179, 292
BstDEI	CTNAG	2 cut(s)	261, 389
BstDSI	CCRYGG	3 cut(s)	300, 316, 360
BstF5I	GGATG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	356, 424
BstMAI	GTCTC	2 cut(s)	6, 116
BstMBI	GATC	2 cut(s)	353, 421
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 152, 287, 296, 305
BstSCI	CCNGG	2 cut(s)	93, 94
BstV1I	GCAGC	2 cut(s)	133, 265
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuI	GTATCC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	299
BtgI	CCRYGG	3 cut(s)	300, 316, 360
BtsCI	GGATG	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	179, 292
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	290
Cfr9I	CCCGGG	1 cut(s)	94
CseI	GACGC	2 cut(s)	296, 314
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	3 cut(s)	295, 317, 361
CviJI	RGCY	4 cut(s)	123, 155, 278, 299
CviKI_1	RGCY	4 cut(s)	123, 155, 278, 299
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	261, 389
DpnI	GATC	2 cut(s)	355, 423
DpnII	GATC	2 cut(s)	353, 421
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	316, 360
Eco88I	CYCGRG	1 cut(s)	94
EcoT14I	CCWWGG	2 cut(s)	316, 360
ErhI	CCWWGG	2 cut(s)	316, 360
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	3 cut(s)	298, 320, 364
FaiI	YATR	6 cut(s)	254, 296, 318, 362, 371, 405
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	3 cut(s)	294, 316, 360
Fnu4HI	GCNGC	2 cut(s)	147, 279
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	147, 279
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	147, 279
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	4 cut(s)	18, 95, 291, 309
HgaI	GACGC	2 cut(s)	296, 314
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	3 cut(s)	162, 288, 306
Hin1II	CATG	3 cut(s)	298, 320, 364
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HinfI	GANTC	4 cut(s)	5, 85, 206, 312
HpaII	CCGG	4 cut(s)	18, 95, 291, 309
Hpy166II	GTNNAC	2 cut(s)	107, 304
Hpy188I	TCNGA	3 cut(s)	60, 82, 286
Hpy188III	TCNNGA	2 cut(s)	9, 413
Hpy8I	GTNNAC	2 cut(s)	107, 304
Hpy99I	CGWCG	7 cut(s)	57, 60, 164, 167, 203, 206, 290
HpyAV	CCTTC	1 cut(s)	134
HpyCH4IV	ACGT	2 cut(s)	109, 162
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 152, 287, 296, 305
HpyF3I	CTNAG	2 cut(s)	261, 389
HpySE526I	ACGT	2 cut(s)	109, 162
Hsp92I	GRCGYC	3 cut(s)	162, 288, 306
Hsp92II	CATG	3 cut(s)	298, 320, 364
HspAI	GCGC	1 cut(s)	144
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	353, 421
LpnPI	CCDG	7 cut(s)	31, 44, 100, 108, 304, 315, 322
Lsp1109I	GCAGC	2 cut(s)	133, 265
MaeII	ACGT	2 cut(s)	109, 162
MalI	GATC	2 cut(s)	355, 423
MboI	GATC	2 cut(s)	353, 421
MboII	GAAGA	4 cut(s)	183, 348, 359, 428
MflI	RGATCY	1 cut(s)	353
MmeI	TCCRAC	2 cut(s)	38, 309
MnlI	CCTC	8 cut(s)	206, 231, 247, 251, 256, 367, 370, 373
MroNI	GCCGGC	1 cut(s)	290
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	299
MspI	CCGG	4 cut(s)	18, 95, 291, 309
MspR9I	CCNGG	2 cut(s)	95, 96
MwoI	GCNNNNNNNGC	5 cut(s)	143, 152, 287, 296, 305
NaeI	GCCGGC	1 cut(s)	292
NciI	CCSGG	2 cut(s)	95, 96
NcoI	CCATGG	2 cut(s)	316, 360
NdeII	GATC	2 cut(s)	353, 421
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	3 cut(s)	298, 320, 364
PdiI	GCCGGC	1 cut(s)	292
PfeI	GAWTC	4 cut(s)	5, 85, 206, 312
PkrI	GCNGC	2 cut(s)	148, 280
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	147, 279
Sau3AI	GATC	2 cut(s)	353, 421
ScrFI	CCNGG	2 cut(s)	95, 96
SetI	ASST	5 cut(s)	49, 112, 165, 239, 280
SmaI	CCCGGG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	299
SsiI	CCGC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	93, 94
StyI	CCWWGG	2 cut(s)	316, 360
TaiI	ACGT	2 cut(s)	112, 165
TaqI	TCGA	1 cut(s)	198
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	4 cut(s)	5, 85, 206, 312
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	2 cut(s)	146, 278
TspGWI	ACGGA	2 cut(s)	41, 388
TspMI	CCCGGG	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmaI	CCCGGG	1 cut(s)	94
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.