Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

49759895 .. 49760425

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1397400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGTTACAGTTCGGAAGAAAGCGGGAGTCCATGCAGCACAACAAACAGAAAACTCAAGGGGGTGCGCCAACGGAAATGGGGCAAGTGGGTGTCCGAAATCCGTGTTCCGGGGACTCAAGACCGGCTTTGGTTAGGCTCCTTCTCCACGGCAGAGGCGGCAGCGGTGGCTCGAGACGTTGCGTATTATTGCTTGCGTCGACCTTCCACGTTGGAAGGCCTTAACTTCCCGTTGGAGTTACCGCCTTGTGCGAGGGATGATATGTCGCCCAGGTCGGTGCAGAAGGCAGCCTCGGATGCTGGCATGGCAGTTGATGCTCAGCTGATAGCCAACAAGTCGCCGCCACAGCAGCCAGCTGGAACTGGAAGCTATGCAGTTGAGACGACTGAGTTTTGGGAAGATGGTTATGTTGGACAGAGTTCTACTTCTACTTCTAGGGGCAGCTGGGGAGGAGGACATGGATTTGGCAACGGCGGTGATCATCAAGGGGGTTTGAGCATTTCCATTGACGATTATGATCTCCAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

177

Amino Acids

18.88

Weight (kDa)

5.39

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	18 - 60	4.3e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AciI	CCGC	6 cut(s)	24, 158, 164, 242, 341, 474
AfiI	CCNNNNNNNGG	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	4 cut(s)	322, 356, 369, 444
AluI	AGCT	4 cut(s)	322, 356, 369, 444
Alw26I	GTCTC	2 cut(s)	168, 374
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	5 cut(s)	36, 161, 287, 349, 441
AspLEI	GCGC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	171
BbvI	GCAGC	5 cut(s)	48, 173, 299, 361, 453
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	2 cut(s)	165, 487
BciT130I	CCWGG	1 cut(s)	271
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	168, 374
BfaI	CTAG	1 cut(s)	435
BisI	GCNGC	7 cut(s)	37, 159, 162, 288, 341, 350, 442
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	7 cut(s)	38, 160, 163, 289, 342, 351, 443
Bme1390I	CCNGG	2 cut(s)	111, 271
BmeT110I	CYCGRG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	111, 271
BmsI	GCATC	2 cut(s)	286, 304
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	2 cut(s)	41, 102
BpuMI	CCSGG	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	516
BsaJI	CCNNGG	4 cut(s)	110, 147, 269, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	4 cut(s)	110, 147, 269, 291
BseGI	GGATG	2 cut(s)	262, 301
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	332, 378
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	5 cut(s)	48, 173, 299, 361, 453
BseYI	CCCAGC	1 cut(s)	444
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	110, 124
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	168, 374
BsmBI	CGTCTC	2 cut(s)	168, 374
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	478, 517
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	6 cut(s)	24, 158, 164, 242, 341, 474
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	331, 379
BspLI	GGNNCC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	110, 147, 269, 291
BssMI	GATC	2 cut(s)	478, 517
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	194, 301, 354
BstDEI	CTNAG	2 cut(s)	318, 387
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	262, 301
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	481, 520
BstMAI	GTCTC	2 cut(s)	168, 374
BstMBI	GATC	2 cut(s)	478, 517
BstMWI	GCNNNNNNNGC	7 cut(s)	158, 167, 296, 305, 314, 346, 349
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	109, 269
BstV1I	GCAGC	5 cut(s)	48, 173, 299, 361, 453
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	262, 301
Cac8I	GCNNGC	3 cut(s)	194, 301, 354
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	123
CseI	GACGC	1 cut(s)	185
CviAII	CATG	3 cut(s)	33, 304, 458
DdeI	CTNAG	2 cut(s)	318, 387
DpnI	GATC	2 cut(s)	480, 519
DpnII	GATC	2 cut(s)	478, 517
Eco147I	AGGCCT	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	269
Esp3I	CGTCTC	2 cut(s)	168, 374
FaeI	CATG	3 cut(s)	36, 307, 461
FaiI	YATR	7 cut(s)	34, 263, 305, 372, 408, 459, 516
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	3 cut(s)	32, 303, 457
FauI	CCCGC	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	7 cut(s)	37, 159, 162, 288, 341, 350, 442
FokI	GGATG	2 cut(s)	269, 308
Fsp4HI	GCNGC	7 cut(s)	37, 159, 162, 288, 341, 350, 442
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	7 cut(s)	37, 159, 162, 288, 341, 350, 442
GsaI	CCCAGC	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	2 cut(s)	110, 124
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	36, 307, 461
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
HinfI	GANTC	2 cut(s)	28, 115
HpaII	CCGG	2 cut(s)	110, 124
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	3 cut(s)	16, 97, 295
Hpy188III	TCNNGA	2 cut(s)	119, 173
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	4 cut(s)	151, 209, 213, 277
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	2 cut(s)	177, 209
HpyCH4V	TGCA	3 cut(s)	36, 280, 374
HpyF10VI	GCNNNNNNNGC	7 cut(s)	158, 167, 296, 305, 314, 346, 349
HpyF3I	CTNAG	2 cut(s)	318, 387
HpySE526I	ACGT	2 cut(s)	177, 209
Hsp92II	CATG	3 cut(s)	36, 307, 461
HspAI	GCGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	478, 517
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	9 cut(s)	123, 137, 256, 283, 285, 342, 348, 366, 430
Lsp1109I	GCAGC	5 cut(s)	48, 173, 299, 361, 453
LweI	GCATC	2 cut(s)	286, 304
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	2 cut(s)	177, 209
MaeIII	GTNAC	2 cut(s)	5, 237
MalI	GATC	2 cut(s)	480, 519
MboI	GATC	2 cut(s)	478, 517
MboII	GAAGA	2 cut(s)	29, 410
MlyI	GAGTC	2 cut(s)	37, 109
MmeI	TCCRAC	3 cut(s)	192, 213, 391
MnlI	CCTC	5 cut(s)	148, 246, 301, 443, 446
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	4 cut(s)	164, 322, 356, 444
MspI	CCGG	2 cut(s)	110, 124
MspR9I	CCNGG	2 cut(s)	111, 271
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	7 cut(s)	158, 167, 296, 305, 314, 346, 349
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	478, 517
NlaIII	CATG	3 cut(s)	36, 307, 461
NlaIV	GGNNCC	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	219
PkrI	GCNGC	7 cut(s)	38, 160, 163, 289, 342, 351, 443
PleI	GAGTC	2 cut(s)	36, 109
PpsI	GAGTC	2 cut(s)	36, 109
Psp6I	CCWGG	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	139
PvuII	CAGCTG	3 cut(s)	322, 356, 444
SalI	GTCGAC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	7 cut(s)	37, 159, 162, 288, 341, 350, 442
Sau3AI	GATC	2 cut(s)	478, 517
SchI	GAGTC	2 cut(s)	37, 109
ScrFI	CCNGG	2 cut(s)	111, 271
SetI	ASST	8 cut(s)	180, 205, 212, 275, 324, 358, 371, 446
SfaNI	GCATC	2 cut(s)	286, 304
Sfr274I	CTCGAG	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	3 cut(s)	56, 117, 171
SmoI	CTYRAG	3 cut(s)	56, 117, 171
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	6 cut(s)	24, 158, 164, 242, 341, 474
SspMI	CTAG	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	109, 269
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	2 cut(s)	180, 212
TaqI	TCGA	2 cut(s)	172, 199
TauI	GCSGC	2 cut(s)	161, 343
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseI	GCWGC	5 cut(s)	36, 161, 287, 349, 441
TspGWI	ACGGA	2 cut(s)	88, 92
XhoI	CTCGAG	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.