Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

13659300 .. 13659947

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCCAAGTCAGCATCGCCTCCCCCACCACCCCTCTGACTTTCCACTTGTTCAACCCATATAACCCCTCTCCTGCCCCTTCTTTTCTCTCCACCAGAACCAAATCCACACAACCTTACAGTTTCGAGTTCGCACACGATAACACAAATGAGTTACAGTTCAGAAGACAGCAGCAGTCCGACGACGACGGCCGGGAACGGCCGCAAGTTGAAGGAGTGCGTCAAAGAAAATGGGGCAAGTGGGTGTCGGAAATCCGCGTTCCCGGCACGCAGGACCGCCTCTGGCTAGGCTCTTTCTCCACTGCCGAGGCCGCCGCGGTGGCTCGCGACGTTGCTTACTATTGCTTGCGTAAGCCTTCGACTCTGGTGGGCCTCAACTTTCCCACAATCTTGCCGTGTTCGGTTAATCAAGCGGTGGACATGTCGCCGAGGTCGATACAGAAGGCGGCTTCGGATGCCGGCATGGCCGTTGATGCTCAGCTGATCAATGCTTATAGTAACAGCTCGTCGCCGCAGAACCGGAGACAGGCAAACGGAAGTGAGCCACCTGGAATGCAGGGCGATGGGTGTTGGGAGGATGCCGGTGAGAGTTCATCAGCCACTACCGGCGGCGAGGCGCTGAGCATTTCGATTGAGGATTATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

215

Amino Acids

23.5

Weight (kDa)

5.23

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	68 - 112	3.1e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	258, 317, 327
AcoI	YGGCCR	3 cut(s)	190, 200, 465
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	55, 212
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	2 cut(s)	481, 504
AluI	AGCT	2 cut(s)	481, 504
Alw26I	GTCTC	1 cut(s)	517
AoxI	GGCC	6 cut(s)	3, 190, 200, 309, 370, 465
ApeKI	GCWGC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	619
AspS9I	GGNCC	3 cut(s)	4, 274, 370
AsuC2I	CCSGG	2 cut(s)	194, 264
AsuHPI	GGTGA	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	557
BceAI	ACGGC	4 cut(s)	205, 215, 379, 452
BciT130I	CCWGG	1 cut(s)	549
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	2 cut(s)	194, 264
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	2 cut(s)	287, 646
BfoI	RGCGCY	1 cut(s)	620
BglI	GCCNNNNNGGC	2 cut(s)	320, 464
BisI	GCNGC	7 cut(s)	173, 203, 312, 315, 447, 512, 610
BlpI	GCTNAGC	2 cut(s)	477, 620
BlsI	GCNGC	7 cut(s)	174, 204, 313, 316, 448, 513, 611
Bme1390I	CCNGG	3 cut(s)	194, 264, 549
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	4, 274, 370
BmrFI	CCNGG	3 cut(s)	194, 264, 549
BmsI	GCATC	4 cut(s)	24, 445, 463, 568
BpiI	GAAGAC	1 cut(s)	172
Bpu1102I	GCTNAGC	2 cut(s)	477, 620
BpuMI	CCSGG	2 cut(s)	194, 264
BsaJI	CCNNGG	3 cut(s)	306, 315, 428
BsaWI	WCCGGW	1 cut(s)	519
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	3 cut(s)	458, 581, 605
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	3 cut(s)	306, 315, 428
BseGI	GGATG	2 cut(s)	460, 583
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMII	CTCAG	2 cut(s)	491, 611
BseX3I	CGGCCG	2 cut(s)	190, 200
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	3 cut(s)	258, 317, 327
Bsh1285I	CGRYCG	2 cut(s)	193, 203
BshFI	GGCC	6 cut(s)	5, 192, 202, 311, 372, 467
BsiEI	CGRYCG	2 cut(s)	193, 203
BsiSI	CCGG	6 cut(s)	193, 264, 459, 520, 582, 606
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	6 cut(s)	5, 192, 202, 311, 372, 467
Bsp143I	GATC	1 cut(s)	483
Bsp1720I	GCTNAGC	2 cut(s)	477, 620
Bsp68I	TCGCGA	1 cut(s)	327
BspANI	GGCC	6 cut(s)	5, 192, 202, 311, 372, 467
BspCNI	CTCAG	2 cut(s)	490, 612
BspFNI	CGCG	3 cut(s)	258, 317, 327
BsrFI	RCCGGY	3 cut(s)	458, 581, 605
BssAI	RCCGGY	3 cut(s)	458, 581, 605
BssECI	CCNNGG	3 cut(s)	306, 315, 428
BssMI	GATC	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	2 cut(s)	122, 159
BstC8I	GCNNGC	4 cut(s)	269, 325, 347, 460
BstDEI	CTNAG	2 cut(s)	477, 620
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	460, 583
BstFNI	CGCG	3 cut(s)	258, 317, 327
BstH2I	RGCGCY	1 cut(s)	620
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	1 cut(s)	483
BstMCI	CGRYCG	2 cut(s)	193, 203
BstMWI	GCNNNNNNNGC	6 cut(s)	264, 311, 320, 455, 464, 473
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	3 cut(s)	192, 262, 547
BstUI	CGCG	3 cut(s)	258, 317, 327
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	172
BstZI	CGGCCG	2 cut(s)	190, 200
BsuRI	GGCC	6 cut(s)	5, 192, 202, 311, 372, 467
BtgI	CCRYGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	2 cut(s)	460, 583
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
BtuMI	TCGCGA	1 cut(s)	327
Cac8I	GCNNGC	4 cut(s)	269, 325, 347, 460
CfoI	GCGC	1 cut(s)	619
Cfr10I	RCCGGY	3 cut(s)	458, 581, 605
Cfr13I	GGNCC	3 cut(s)	4, 274, 370
Cfr42I	CCGCGG	1 cut(s)	318
CseI	GACGC	1 cut(s)	209
CviAII	CATG	2 cut(s)	421, 463
DdeI	CTNAG	2 cut(s)	477, 620
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
EaeI	YGGCCR	3 cut(s)	190, 200, 465
EagI	CGGCCG	2 cut(s)	190, 200
EclXI	CGGCCG	2 cut(s)	190, 200
Eco47I	GGWCC	1 cut(s)	274
Eco52I	CGGCCG	2 cut(s)	190, 200
EcoRII	CCWGG	1 cut(s)	547
FaeI	CATG	2 cut(s)	424, 466
FaiI	YATR	5 cut(s)	61, 63, 422, 464, 495
FatI	CATG	2 cut(s)	420, 462
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	7 cut(s)	173, 203, 312, 315, 447, 512, 610
FokI	GGATG	2 cut(s)	467, 590
Fsp4HI	GCNGC	7 cut(s)	173, 203, 312, 315, 447, 512, 610
FspBI	CTAG	2 cut(s)	287, 646
GlaI	GCGC	1 cut(s)	618
GluI	GCNGC	7 cut(s)	173, 203, 312, 315, 447, 512, 610
HaeII	RGCGCY	1 cut(s)	620
HaeIII	GGCC	6 cut(s)	5, 192, 202, 311, 372, 467
HapII	CCGG	6 cut(s)	193, 264, 459, 520, 582, 606
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	619
Hin1II	CATG	2 cut(s)	424, 466
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	6 cut(s)	193, 264, 459, 520, 582, 606
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	5 cut(s)	39, 164, 181, 250, 454
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	5 cut(s)	185, 188, 191, 332, 511
HpyAV	CCTTC	4 cut(s)	90, 206, 366, 436
HpyCH4III	ACNGT	2 cut(s)	122, 159
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	1 cut(s)	556
HpyF10VI	GCNNNNNNNGC	6 cut(s)	264, 311, 320, 455, 464, 473
HpyF3I	CTNAG	2 cut(s)	477, 620
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	424, 466
HspAI	GCGC	1 cut(s)	617
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	483
KspI	CCGCGG	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	483
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	4 cut(s)	24, 445, 463, 568
MaeI	CTAG	2 cut(s)	287, 646
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	153, 497
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MboII	GAAGA	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	2 cut(s)	204, 228
MroNI	GCCGGC	1 cut(s)	458
MseI	TTAA	1 cut(s)	405
MspA1I	CMGCKG	2 cut(s)	317, 481
MspI	CCGG	6 cut(s)	193, 264, 459, 520, 582, 606
MspR9I	CCNGG	3 cut(s)	194, 264, 549
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	549
MvnI	CGCG	3 cut(s)	258, 317, 327
MwoI	GCNNNNNNNGC	6 cut(s)	264, 311, 320, 455, 464, 473
NaeI	GCCGGC	1 cut(s)	460
NciI	CCSGG	2 cut(s)	194, 264
NdeII	GATC	1 cut(s)	483
NgoMIV	GCCGGC	1 cut(s)	458
NlaIII	CATG	2 cut(s)	424, 466
NmeAIII	GCCGAG	2 cut(s)	331, 453
NruI	TCGCGA	1 cut(s)	327
NspI	RCATGY	1 cut(s)	424
PciI	ACATGT	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PctI	GAATGC	1 cut(s)	558
PdiI	GCCGGC	1 cut(s)	460
PkrI	GCNGC	7 cut(s)	174, 204, 313, 316, 448, 513, 611
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PscI	ACATGT	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspPI	GGNCC	3 cut(s)	4, 274, 370
PvuII	CAGCTG	1 cut(s)	481
RruI	TCGCGA	1 cut(s)	327
SacII	CCGCGG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	7 cut(s)	173, 203, 312, 315, 447, 512, 610
Sau3AI	GATC	1 cut(s)	483
Sau96I	GGNCC	3 cut(s)	4, 274, 370
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	3 cut(s)	194, 264, 549
SetI	ASST	6 cut(s)	118, 333, 434, 483, 506, 550
SfaNI	GCATC	4 cut(s)	24, 445, 463, 568
Sfr303I	CCGCGG	1 cut(s)	318
SgrBI	CCGCGG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	274
SspMI	CTAG	2 cut(s)	287, 646
StyD4I	CCNGG	3 cut(s)	192, 262, 547
TaaI	ACNGT	2 cut(s)	122, 159
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	4 cut(s)	126, 359, 434, 629
TauI	GCSGC	6 cut(s)	205, 314, 317, 449, 514, 612
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	582
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	274
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	2 cut(s)	287, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.