Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

25181047 .. 25182204

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0266900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCTCTATGTGGTGGCCCTTGGATTTTGGGCTGGCCAAACTCTTATTGTGAAAAAGTGGAAACCGGATTTTGATCCCATGACTAAACAAATTGGCAAAATGGCTTTGTGGGTTAGAATTTTTGGACTGCCTGTGAAATATTTTAAGGAGTTTACTGTGGCAAAGATTGGAAAAATCCTTGGGGATGTTGTGAAAGTTGATAAGCTTACTGTTGGTCAATCTAGTGGTAAGTTTGCTAGAGTTTGCATTGAGGTGGACCTAAGTAAACCTTTGAGGCCTTATGTTGAAGTTGAGTCCACTGCTTTTCAAGTTGTTTATGAAGGCATCTCTCTTATTTGCTTTGAATGTGGCTGTTTTGGGCACCCTAAAGATAAGTGTCCTACTCTGAAAGTTAACTCTAATGGGACTTCTCCACAGAAAACCCATGTGGTTGATGTGACTAGGACTTCTGCTCCTAATTGTGATGGTGCTGACAATTCTGATGTGAACATGTCCCATGACTTAATTAAGGATGCCTCTAGTGCTCATGATGTTGTATTAAAAGATGATATGGGTCCCTGGATGCTCATGAGCTATAGGAATAAAAAGAAGAGCAATGATTCTAGTGGCCTAAAAAAGAGCAGCAGTTCTGGTTCTAGATTTGCTGTGTTGCAGGAGGAGAATGAGTCTCAATTGCCTGCTCAGACCATGGGTACTAACACCGTTGAAACAGCTCCTCCCATTGTGAAACTTTGGCAAAGCTTCCAAGAGAAAAATAAAAAAGCCTCTGTGTCCTCTAAAGCTAATAATGCTAGTAACTCTCATGTCACTGTGCAGAATAATGCAAATGATGGCAGTACTTCACCACCTAACACTGGTCCAAAATTTTCTAAAAATCCCAGCTTCAAGATTAAGGTGAACTCCAGAATTCCAATGAAGGATGTCTCTAATATTGGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

313

Amino Acids

34.24

Weight (kDa)

9.33

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	3 cut(s)	117, 863, 906
AfaI	GTAC	2 cut(s)	694, 838
AfiI	CCNNNNNNNGG	1 cut(s)	854
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	5 cut(s)	287, 308, 344, 707, 886
AjnI	CCWGG	1 cut(s)	557
AluBI	AGCT	7 cut(s)	205, 573, 713, 741, 782, 882, 939
AluI	AGCT	7 cut(s)	205, 573, 713, 741, 782, 882, 939
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	2 cut(s)	672, 928
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	4 cut(s)	15, 34, 275, 607
ApeKI	GCWGC	1 cut(s)	621
ApoI	RAATTY	3 cut(s)	117, 863, 906
AspS9I	GGNCC	4 cut(s)	16, 256, 554, 857
AsuHPI	GGTGA	2 cut(s)	834, 907
AvaII	GGWCC	3 cut(s)	256, 554, 857
BaeGI	GKGCMC	1 cut(s)	363
BalI	TGGCCA	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	1 cut(s)	633
BccI	CCATC	2 cut(s)	458, 824
BciT130I	CCWGG	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	672, 928
BfaI	CTAG	7 cut(s)	222, 237, 441, 519, 603, 636, 792
BfmI	CTRYAG	1 cut(s)	574
BisI	GCNGC	1 cut(s)	622
BlsI	GCNGC	1 cut(s)	623
BmcAI	AGTACT	1 cut(s)	838
Bme1390I	CCNGG	1 cut(s)	559
Bme18I	GGWCC	3 cut(s)	256, 554, 857
BmgT120I	GGNCC	4 cut(s)	16, 256, 554, 857
BmiI	GGNNCC	3 cut(s)	362, 555, 556
BmrFI	CCNGG	1 cut(s)	559
BmsI	GCATC	3 cut(s)	333, 502, 552
BpmI	CTGGAG	1 cut(s)	886
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	4 cut(s)	19, 178, 557, 687
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	6 cut(s)	436, 466, 650, 680, 700, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	854
Bse1I	ACTGG	1 cut(s)	859
Bse3DI	GCAATG	1 cut(s)	601
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	559
BseDI	CCNNGG	4 cut(s)	19, 178, 557, 687
BseGI	GGATG	4 cut(s)	190, 517, 567, 925
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	854
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	1 cut(s)	695
BseNI	ACTGG	1 cut(s)	859
BseRI	GAGGAG	2 cut(s)	671, 705
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	633
BseYI	CCCAGC	1 cut(s)	878
BsgI	GTGCAG	1 cut(s)	833
BshFI	GGCC	4 cut(s)	17, 36, 277, 609
BshNI	GGYRCC	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	3 cut(s)	418, 478, 540
BslI	CCNNNNNNNGG	1 cut(s)	854
BsmAI	GTCTC	2 cut(s)	672, 928
BsmFI	GGGAC	3 cut(s)	418, 478, 540
BsnI	GGCC	4 cut(s)	17, 36, 277, 609
Bsp1286I	GDGCHC	2 cut(s)	363, 526
Bsp143I	GATC	1 cut(s)	73
Bsp19I	CCATGG	1 cut(s)	687
BspANI	GGCC	4 cut(s)	17, 36, 277, 609
BspCNI	CTCAG	1 cut(s)	694
BspHI	TCATGA	2 cut(s)	526, 567
BspLI	GGNNCC	3 cut(s)	362, 555, 556
BspPI	GGATC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	584
BspT107I	GGYRCC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	859
BssECI	CCNNGG	4 cut(s)	19, 178, 557, 687
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	3 cut(s)	19, 178, 687
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	4 cut(s)	157, 211, 703, 811
Bst6I	CTCTTC	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	34, 678
BstDEI	CTNAG	2 cut(s)	260, 681
BstDSI	CCRYGG	1 cut(s)	687
BstF5I	GGATG	4 cut(s)	190, 517, 567, 925
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	672, 928
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	521, 788
BstNI	CCWGG	1 cut(s)	559
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	557
BstSFI	CTRYAG	1 cut(s)	574
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	633
BsuRI	GGCC	4 cut(s)	17, 36, 277, 609
BtgI	CCRYGG	1 cut(s)	687
BtsCI	GGATG	4 cut(s)	190, 517, 567, 925
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	3 cut(s)	297, 807, 852
Cac8I	GCNNGC	2 cut(s)	34, 678
CciI	TCATGA	2 cut(s)	526, 567
Cfr13I	GGNCC	4 cut(s)	16, 256, 554, 857
Csp6I	GTAC	2 cut(s)	693, 837
CviAII	CATG	8 cut(s)	79, 425, 490, 497, 527, 568, 688, 803
CviQI	GTAC	2 cut(s)	693, 837
DdeI	CTNAG	2 cut(s)	260, 681
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
Eco130I	CCWWGG	3 cut(s)	19, 178, 687
Eco147I	AGGCCT	1 cut(s)	277
Eco47I	GGWCC	3 cut(s)	256, 554, 857
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	906
EcoRII	CCWGG	1 cut(s)	557
EcoT14I	CCWWGG	3 cut(s)	19, 178, 687
ErhI	CCWWGG	3 cut(s)	19, 178, 687
FaeI	CATG	8 cut(s)	82, 428, 493, 500, 530, 571, 691, 806
FalI	AAGNNNNNCTT	2 cut(s)	253, 285
FaqI	GGGAC	3 cut(s)	418, 478, 540
FatI	CATG	8 cut(s)	78, 424, 489, 496, 526, 567, 687, 802
Fnu4HI	GCNGC	1 cut(s)	622
FokI	GGATG	4 cut(s)	197, 524, 574, 932
Fsp4HI	GCNGC	1 cut(s)	622
FspBI	CTAG	7 cut(s)	222, 237, 441, 519, 603, 636, 792
GluI	GCNGC	1 cut(s)	622
GsaI	CCCAGC	1 cut(s)	882
GsuI	CTGGAG	1 cut(s)	886
HaeIII	GGCC	4 cut(s)	17, 36, 277, 609
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	8 cut(s)	82, 428, 493, 500, 530, 571, 691, 806
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	2 cut(s)	203, 739
HinfI	GANTC	3 cut(s)	293, 599, 665
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	2 cut(s)	834, 907
Hpy166II	GTNNAC	7 cut(s)	153, 256, 266, 297, 394, 487, 898
Hpy188I	TCNGA	3 cut(s)	387, 481, 684
Hpy188III	TCNNGA	5 cut(s)	527, 568, 636, 886, 903
Hpy8I	GTNNAC	7 cut(s)	153, 256, 266, 297, 394, 487, 898
HpyAV	CCTTC	2 cut(s)	314, 910
HpyCH4III	ACNGT	4 cut(s)	157, 211, 703, 811
HpyCH4V	TGCA	4 cut(s)	246, 652, 814, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	521, 788
HpyF3I	CTNAG	2 cut(s)	260, 681
Hsp92II	CATG	8 cut(s)	82, 428, 493, 500, 530, 571, 691, 806
KflI	GGGWCCC	1 cut(s)	554
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	1 cut(s)	73
LguI	GCTCTTC	1 cut(s)	584
LmnI	GCTCC	3 cut(s)	457, 718, 936
Lsp1109I	GCAGC	1 cut(s)	633
LweI	GCATC	3 cut(s)	333, 502, 552
MaeI	CTAG	7 cut(s)	222, 237, 441, 519, 603, 636, 792
MaeIII	GTNAC	3 cut(s)	436, 794, 805
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	601
MfeI	CAATTG	1 cut(s)	671
MhlI	GDGCHC	2 cut(s)	363, 526
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	8 cut(s)	90, 117, 457, 475, 504, 671, 863, 906
MluNI	TGGCCA	1 cut(s)	36
MlyI	GAGTC	2 cut(s)	302, 674
MnlI	CCTC	7 cut(s)	244, 267, 526, 649, 726, 775, 784
Mox20I	TGGCCA	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	6 cut(s)	144, 393, 503, 507, 539, 891
MslI	CAYNNNNRTG	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	559
MunI	CAATTG	1 cut(s)	671
MvaI	CCWGG	1 cut(s)	559
MwoI	GCNNNNNNNGC	2 cut(s)	521, 788
NcoI	CCATGG	1 cut(s)	687
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	8 cut(s)	82, 428, 493, 500, 530, 571, 691, 806
NlaIV	GGNNCC	3 cut(s)	362, 555, 556
NmuCI	GTSAC	2 cut(s)	436, 805
NspI	RCATGY	1 cut(s)	493
PacI	TTAATTAA	1 cut(s)	507
PagI	TCATGA	2 cut(s)	526, 567
PceI	AGGCCT	1 cut(s)	277
PciI	ACATGT	1 cut(s)	489
PciSI	GCTCTTC	1 cut(s)	584
PfeI	GAWTC	1 cut(s)	599
PkrI	GCNGC	1 cut(s)	623
PleI	GAGTC	2 cut(s)	301, 673
PpsI	GAGTC	2 cut(s)	301, 673
PpuMI	RGGWCCY	1 cut(s)	554
PscI	ACATGT	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	878
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	3 cut(s)	362, 555, 556
PspPI	GGNCC	4 cut(s)	16, 256, 554, 857
PspPPI	RGGWCCY	1 cut(s)	554
RsaI	GTAC	2 cut(s)	694, 838
RsaNI	GTAC	2 cut(s)	693, 837
RseI	CAYNNNNRTG	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	584
SaqAI	TTAA	6 cut(s)	144, 393, 503, 507, 539, 891
SatI	GCNGC	1 cut(s)	622
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	4 cut(s)	16, 256, 554, 857
ScaI	AGTACT	1 cut(s)	838
SchI	GAGTC	2 cut(s)	302, 674
ScrFI	CCNGG	1 cut(s)	559
SduI	GDGCHC	2 cut(s)	363, 526
SfaNI	GCATC	3 cut(s)	333, 502, 552
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	3 cut(s)	256, 554, 857
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	8 cut(s)	90, 117, 457, 475, 504, 671, 863, 906
SseBI	AGGCCT	1 cut(s)	277
SspI	AATATT	2 cut(s)	140, 931
SspMI	CTAG	7 cut(s)	222, 237, 441, 519, 603, 636, 792
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	557
StyI	CCWWGG	3 cut(s)	19, 178, 687
TaaI	ACNGT	4 cut(s)	157, 211, 703, 811
TasI	AATT	8 cut(s)	90, 117, 457, 475, 504, 671, 863, 906
TatI	WGTACW	1 cut(s)	836
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	6 cut(s)	144, 393, 503, 507, 539, 891
Tru9I	TTAA	6 cut(s)	144, 393, 503, 507, 539, 891
TscAI	CASTG	3 cut(s)	304, 814, 859
TseFI	GTSAC	2 cut(s)	436, 805
TseI	GCWGC	1 cut(s)	621
Tsp45I	GTSAC	2 cut(s)	436, 805
TspDTI	ATGAA	2 cut(s)	333, 929
TspRI	CASTG	3 cut(s)	304, 814, 859
VpaK11BI	GGWCC	3 cut(s)	256, 554, 857
XapI	RAATTY	3 cut(s)	117, 863, 906
XbaI	TCTAGA	1 cut(s)	635
XceI	RCATGY	1 cut(s)	493
XspI	CTAG	7 cut(s)	222, 237, 441, 519, 603, 636, 792
ZrmI	AGTACT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.