Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

15336405 .. 15336908

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGTTACAGTTCAGAAGACAGCAGCAGTCGGACGACGACAGCCGGGAGTGGCCGTAAGTTGAAGGGAGTGCGTCAAAGAAAATGGGGCAAGTGGGTGTCGGAAATCCGCGTCCCCGGCATGCAGGACCGCCTCTGGCTAGGCTCTTTCTCCACTGCCGAGGCCGCCGCCGTGGCTCGCGACGTTGCTTACTATTGCTTGCGTAAGCCTTCGACTCTGGACGGCCTCAACTTTCCCAATATCTTGCCGTGTTCGGTTAATCAAGCGGCGGACATGTCGCCGAGGTCGATACAGAAGGCGGCTTCGGATGCCGGCATGGGCGTTGATGCTCAGCTGATCAATGCTAATAGTATTAACAGCTCGTCGCCGCAGAACAGTAGACAGGCCAACGGAAGTGAGCCACGTGGAATGCAGAGCGGTGGGTGTTGGGAGGATACCGGTGAGAGTTCATCAGCCAATACCGGAGGCGAGGCGCTGAGCATTTCGATTGAAGATTATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

168

Amino Acids

17.76

Weight (kDa)

6.28

Isoelectric Point (pI)

57.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	20 - 63	3.6e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	379
AccII	CGCG	2 cut(s)	111, 180
AciI	CCGC	9 cut(s)	109, 130, 165, 168, 266, 269, 299, 368, 417
AcoI	YGGCCR	1 cut(s)	52
AcvI	CACGTG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	273
AgeI	ACCGGT	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	64, 491
AluBI	AGCT	2 cut(s)	334, 360
AluI	AGCT	2 cut(s)	334, 360
AoxI	GGCC	4 cut(s)	52, 162, 223, 384
ApeKI	GCWGC	1 cut(s)	24
AsiGI	ACCGGT	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	2 cut(s)	46, 117
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	127
BbrPI	CACGTG	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	36
BceAI	ACGGC	4 cut(s)	39, 155, 232, 238
BciVI	GTATCC	1 cut(s)	427
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	2 cut(s)	46, 117
BfaI	CTAG	2 cut(s)	140, 502
BfoI	RGCGCY	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	427
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	6 cut(s)	25, 165, 168, 267, 300, 368
BlpI	GCTNAGC	2 cut(s)	330, 476
BlsI	GCNGC	6 cut(s)	26, 166, 169, 268, 301, 369
Bme1390I	CCNGG	2 cut(s)	46, 117
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	46, 117
BmsI	GCATC	2 cut(s)	298, 316
BpiI	GAAGAC	1 cut(s)	24
Bpu1102I	GCTNAGC	2 cut(s)	330, 476
BpuMI	CCSGG	2 cut(s)	46, 117
BsaAI	YACGTR	1 cut(s)	404
BsaJI	CCNNGG	4 cut(s)	115, 159, 171, 281
BsaWI	WCCGGW	2 cut(s)	437, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bse118I	RCCGGY	2 cut(s)	311, 437
BseDI	CCNNGG	4 cut(s)	115, 159, 171, 281
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	344, 467
BseXI	GCAGC	1 cut(s)	36
Bsh1236I	CGCG	2 cut(s)	111, 180
BshFI	GGCC	4 cut(s)	54, 164, 225, 386
BshTI	ACCGGT	1 cut(s)	437
BsiSI	CCGG	5 cut(s)	45, 117, 312, 438, 462
BslFI	GGGAC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	4 cut(s)	54, 164, 225, 386
Bsp143I	GATC	1 cut(s)	336
Bsp1720I	GCTNAGC	2 cut(s)	330, 476
Bsp68I	TCGCGA	1 cut(s)	180
BspACI	CCGC	9 cut(s)	109, 130, 165, 168, 266, 269, 299, 368, 417
BspANI	GGCC	4 cut(s)	54, 164, 225, 386
BspCNI	CTCAG	2 cut(s)	343, 468
BspFNI	CGCG	2 cut(s)	111, 180
BsrBI	CCGCTC	1 cut(s)	417
BsrFI	RCCGGY	2 cut(s)	311, 437
BssAI	RCCGGY	2 cut(s)	311, 437
BssECI	CCNNGG	4 cut(s)	115, 159, 171, 281
BssMI	GATC	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	11, 377
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	4 cut(s)	122, 178, 200, 313
BstDEI	CTNAG	2 cut(s)	330, 476
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	2 cut(s)	111, 180
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 164, 173, 308
BstNSI	RCATGY	2 cut(s)	124, 277
BstSCI	CCNGG	2 cut(s)	44, 115
BstUI	CGCG	2 cut(s)	111, 180
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	4 cut(s)	54, 164, 225, 386
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
BtuMI	TCGCGA	1 cut(s)	180
Cac8I	GCNNGC	4 cut(s)	122, 178, 200, 313
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	2 cut(s)	311, 437
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	2 cut(s)	62, 100
CspAI	ACCGGT	1 cut(s)	437
CviAII	CATG	3 cut(s)	121, 274, 316
DdeI	CTNAG	2 cut(s)	330, 476
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	127
Eco72I	CACGTG	1 cut(s)	404
FaeI	CATG	3 cut(s)	124, 277, 319
FaiI	YATR	3 cut(s)	122, 275, 317
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	120, 273, 315
FbaI	TGATCA	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	6 cut(s)	25, 165, 168, 267, 300, 368
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	6 cut(s)	25, 165, 168, 267, 300, 368
FspBI	CTAG	2 cut(s)	140, 502
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	6 cut(s)	25, 165, 168, 267, 300, 368
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	4 cut(s)	54, 164, 225, 386
HapII	CCGG	5 cut(s)	45, 117, 312, 438, 462
HgaI	GACGC	2 cut(s)	62, 100
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	3 cut(s)	124, 277, 319
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	5 cut(s)	45, 117, 312, 438, 462
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	4 cut(s)	16, 33, 103, 307
Hpy188III	TCNNGA	2 cut(s)	179, 218
Hpy8I	GTNNAC	1 cut(s)	380
Hpy99I	CGWCG	3 cut(s)	40, 185, 367
HpyAV	CCTTC	3 cut(s)	58, 219, 289
HpyCH4III	ACNGT	2 cut(s)	11, 377
HpyCH4IV	ACGT	2 cut(s)	183, 403
HpyCH4V	TGCA	2 cut(s)	124, 412
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 164, 173, 308
HpyF3I	CTNAG	2 cut(s)	330, 476
HpySE526I	ACGT	2 cut(s)	183, 403
Hsp92II	CATG	3 cut(s)	124, 277, 319
HspAI	GCGC	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	9 cut(s)	58, 110, 121, 130, 203, 325, 368, 451, 475
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	2 cut(s)	298, 316
MaeI	CTAG	2 cut(s)	140, 502
MaeII	ACGT	2 cut(s)	183, 403
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	338
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	1 cut(s)	336
MboII	GAAGA	2 cut(s)	29, 503
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	2 cut(s)	11, 81
MnlI	CCTC	7 cut(s)	143, 154, 236, 276, 424, 458, 463
MroNI	GCCGGC	1 cut(s)	311
MseI	TTAA	2 cut(s)	258, 354
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	5 cut(s)	45, 117, 312, 438, 462
MspR9I	CCNGG	2 cut(s)	46, 117
Mva1269I	GAATGC	1 cut(s)	414
MvnI	CGCG	2 cut(s)	111, 180
MwoI	GCNNNNNNNGC	4 cut(s)	117, 164, 173, 308
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	2 cut(s)	46, 117
NdeII	GATC	1 cut(s)	336
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	3 cut(s)	124, 277, 319
NmeAIII	GCCGAG	2 cut(s)	184, 306
NruI	TCGCGA	1 cut(s)	180
NspI	RCATGY	2 cut(s)	124, 277
PaeI	GCATGC	1 cut(s)	124
PciI	ACATGT	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PctI	GAATGC	1 cut(s)	414
PdiI	GCCGGC	1 cut(s)	313
PinAI	ACCGGT	1 cut(s)	437
PkrI	GCNGC	6 cut(s)	26, 166, 169, 268, 301, 369
PleI	GAGTC	1 cut(s)	208
PmaCI	CACGTG	1 cut(s)	404
PmlI	CACGTG	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	404
PscI	ACATGT	1 cut(s)	273
PspCI	CACGTG	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	334
RruI	TCGCGA	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	258, 354
SatI	GCNGC	6 cut(s)	25, 165, 168, 267, 300, 368
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	46, 117
SetI	ASST	5 cut(s)	186, 287, 336, 362, 406
SfaNI	GCATC	2 cut(s)	298, 316
SinI	GGWCC	1 cut(s)	127
SphI	GCATGC	1 cut(s)	124
SsiI	CCGC	9 cut(s)	109, 130, 165, 168, 266, 269, 299, 368, 417
SspMI	CTAG	2 cut(s)	140, 502
StyD4I	CCNGG	2 cut(s)	44, 115
TaaI	ACNGT	2 cut(s)	11, 377
TaiI	ACGT	2 cut(s)	186, 406
TaqI	TCGA	3 cut(s)	212, 287, 485
TauI	GCSGC	5 cut(s)	167, 170, 269, 302, 370
Tru1I	TTAA	2 cut(s)	258, 354
Tru9I	TTAA	2 cut(s)	258, 354
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	127
XceI	RCATGY	2 cut(s)	124, 277
XmiI	GTMKAC	1 cut(s)	379
XspI	CTAG	2 cut(s)	140, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.