Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Reverse (-)

25168476 .. 25177987

Gene Structure 9512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0266800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTGGTTCCACTCCTAAAAATACCATTAGATGTCATCATTGTGCCGGTCCTCTTTCTAAGGAGATGGAAACTAGTGCATGGACAGTTCCACCTCTTATCAGGGATAGCTTCTCTATGATTGGCTCTGCTGTTGGTGGTACAGTAAGTGCTTTTTATGGATTCAATTATGTGATGCCTATTGTTCAGAGACGGGTAAAAGGACCTATGTGGTTACATTTTTTCATTGGTGCTCCTCCCGTCATTGTATTCTCTTCAGCTTGTGCTGGTTTGGCAGGTGGTGCAATTCCAGCTGTGGCCCAACTTGCTTCGTCATCTTATCATGCAGCTGTCTCATCCTCCTCGTTGCCTCCTGCGACTTCTCAAGATGAGAAGATGCACAAGTCCAGAAATTCCTCTACTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

135

Amino Acids

14.17

Weight (kDa)

9.45

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	391
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	166
AhlI	ACTAGT	1 cut(s)	74
AluBI	AGCT	4 cut(s)	111, 260, 293, 329
AluI	AGCT	4 cut(s)	111, 260, 293, 329
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	184, 337
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	50, 203, 298
AvaII	GGWCC	2 cut(s)	50, 203
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	184, 337
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme18I	GGWCC	2 cut(s)	50, 203
BmgT120I	GGNCC	3 cut(s)	50, 203, 298
BmiI	GGNNCC	1 cut(s)	10
BmsI	GCATC	2 cut(s)	165, 366
BpuEI	CTTGAG	1 cut(s)	348
Bse118I	RCCGGY	1 cut(s)	47
BseGI	GGATG	1 cut(s)	335
BseRI	GAGGAG	2 cut(s)	225, 331
BseXI	GCAGC	1 cut(s)	338
BshFI	GGCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	48
BsmAI	GTCTC	2 cut(s)	184, 337
BsmBI	CGTCTC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	10
BspMI	ACCTGC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	88, 145
Bst6I	CTCTTC	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	335
BstMAI	GTCTC	2 cut(s)	184, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 281, 290, 305
BstV1I	GCAGC	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	335
BveI	ACCTGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	3 cut(s)	50, 203, 298
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	2 cut(s)	81, 323
CviJI	RGCY	7 cut(s)	5, 111, 126, 260, 293, 299, 329
CviKI_1	RGCY	7 cut(s)	5, 111, 126, 260, 293, 299, 329
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	50, 203
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	2 cut(s)	84, 326
FaiI	YATR	6 cut(s)	82, 119, 159, 171, 209, 324
FatI	CATG	2 cut(s)	80, 322
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	2 cut(s)	84, 326
HinfI	GANTC	1 cut(s)	162
HpaII	CCGG	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	365, 387
HpyCH4III	ACNGT	2 cut(s)	88, 145
HpyCH4V	TGCA	4 cut(s)	80, 284, 326, 379
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 281, 290, 305
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	84, 326
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	7 cut(s)	61, 88, 252, 261, 303, 366, 400
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	2 cut(s)	165, 366
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	213
MboII	GAAGA	2 cut(s)	246, 385
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	3 cut(s)	166, 285, 391
MnlI	CCTC	7 cut(s)	63, 105, 246, 349, 352, 360, 406
MslI	CAYNNNNRTG	1 cut(s)	42
MspA1I	CMGCKG	2 cut(s)	293, 329
MspI	CCGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	272, 281, 290, 305
NlaIII	CATG	2 cut(s)	84, 326
NlaIV	GGNNCC	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	3 cut(s)	50, 203, 298
PspPPI	RGGWCCY	1 cut(s)	203
PvuII	CAGCTG	2 cut(s)	293, 329
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	42
SatI	GCNGC	1 cut(s)	327
Sau96I	GGNCC	3 cut(s)	50, 203, 298
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	7 cut(s)	97, 113, 208, 262, 280, 295, 331
SfaNI	GCATC	2 cut(s)	165, 366
SinI	GGWCC	2 cut(s)	50, 203
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	3 cut(s)	166, 285, 391
SspMI	CTAG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	88, 145
TasI	AATT	3 cut(s)	166, 285, 391
TfiI	GAWTC	1 cut(s)	162
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	214
VpaK11BI	GGWCC	2 cut(s)	50, 203
XapI	RAATTY	1 cut(s)	391
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.