Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

15309030 .. 15309530

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001414

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGTTACAGTTCGGAAGACAGCAGCAGTCCGACGACGACGACCGAGAACGGCCGCAAGTTGAAGGGAGTGCGTCAAAGAAAATGGGGCAAGTGGGTGTCGGAAATCCGCGTCCCCGGGACGCAGGACCGCCTCTGGCTCGGCTCTTTCTCCACTGCCGAGGCCGCCGCGGTGGCACGCGACGTTGCTTACTATTGCTTGCGTAAGCCTTCGACTCTGGAGGGCCTCAACTTTCCCACAACCTTGCCGTGTTCGGTTAATCAAGCGGTGGACATGTCGCCGAGGTCGATACAGAAGGCGGCTTCGGATGCCGGCATGGCCGTTGATGCTCAGCTGATCAATGCTTATAGTAACAGCTCGTCGCCGCAGAACTGGAGACAGGAAAACGGAAGTGAGCCACGTGGAATGCAGGGCAGTGGGTGTTGGGAGGATGCCGGTGAGAGTTCATCAGCCACTACCGGCGGCGAGGAGCTGAGCATTTCGATTGAGGATTATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

167

Amino Acids

17.94

Weight (kDa)

4.92

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	20 - 63	3.4e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	111, 170, 180
AcoI	YGGCCR	2 cut(s)	52, 318
AcvI	CACGTG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	3 cut(s)	334, 357, 472
AluI	AGCT	3 cut(s)	334, 357, 472
Alw26I	GTCTC	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	4 cut(s)	52, 162, 223, 318
ApeKI	GCWGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	127, 223
AsuC2I	CCSGG	2 cut(s)	117, 118
AsuHPI	GGTGA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	127
BbrPI	CACGTG	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	36
BceAI	ACGGC	3 cut(s)	67, 232, 305
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	2 cut(s)	117, 118
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	499
BglI	GCCNNNNNGGC	2 cut(s)	173, 317
BisI	GCNGC	7 cut(s)	25, 55, 165, 168, 300, 365, 463
BlpI	GCTNAGC	2 cut(s)	330, 473
BlsI	GCNGC	7 cut(s)	26, 56, 166, 169, 301, 366, 464
Bme1390I	CCNGG	2 cut(s)	117, 118
Bme18I	GGWCC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	127, 223
BmrFI	CCNGG	2 cut(s)	117, 118
BmsI	GCATC	3 cut(s)	298, 316, 421
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	239, 394
Bpu1102I	GCTNAGC	2 cut(s)	330, 473
BpuMI	CCSGG	2 cut(s)	117, 118
BsaAI	YACGTR	1 cut(s)	401
BsaJI	CCNNGG	5 cut(s)	115, 116, 159, 168, 281
Bse118I	RCCGGY	3 cut(s)	311, 434, 458
Bse1I	ACTGG	1 cut(s)	377
BseDI	CCNNGG	5 cut(s)	115, 116, 159, 168, 281
BseGI	GGATG	2 cut(s)	313, 436
BseMII	CTCAG	2 cut(s)	344, 464
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	482
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	36
Bsh1236I	CGCG	3 cut(s)	111, 170, 180
Bsh1285I	CGRYCG	2 cut(s)	45, 55
BshFI	GGCC	4 cut(s)	54, 164, 225, 320
BsiEI	CGRYCG	2 cut(s)	45, 55
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	4 cut(s)	117, 312, 435, 459
BslFI	GGGAC	2 cut(s)	98, 133
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	2 cut(s)	98, 133
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	4 cut(s)	54, 164, 225, 320
BsoBI	CYCGRG	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	336
Bsp1720I	GCTNAGC	2 cut(s)	330, 473
BspANI	GGCC	4 cut(s)	54, 164, 225, 320
BspCNI	CTCAG	2 cut(s)	343, 465
BspFNI	CGCG	3 cut(s)	111, 170, 180
BsrFI	RCCGGY	3 cut(s)	311, 434, 458
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	3 cut(s)	311, 434, 458
BssECI	CCNNGG	5 cut(s)	115, 116, 159, 168, 281
BssMI	GATC	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	178, 200, 313
BstDEI	CTNAG	2 cut(s)	330, 473
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	313, 436
BstFNI	CGCG	3 cut(s)	111, 170, 180
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	336
BstMCI	CGRYCG	2 cut(s)	45, 55
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 173, 308, 317, 326
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	115, 116
BstUI	CGCG	3 cut(s)	111, 170, 180
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	24
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	4 cut(s)	54, 164, 225, 320
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	313, 436
BtsI	GCAGTG	2 cut(s)	153, 421
BtsIMutI	CAGTG	2 cut(s)	153, 421
Cac8I	GCNNGC	3 cut(s)	178, 200, 313
Cfr10I	RCCGGY	3 cut(s)	311, 434, 458
Cfr13I	GGNCC	2 cut(s)	127, 223
Cfr42I	CCGCGG	1 cut(s)	171
Cfr9I	CCCGGG	1 cut(s)	116
CseI	GACGC	3 cut(s)	62, 100, 130
CviAII	CATG	2 cut(s)	274, 316
DdeI	CTNAG	2 cut(s)	330, 473
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	2 cut(s)	52, 318
EagI	CGGCCG	1 cut(s)	52
EclXI	CGGCCG	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	127
Eco52I	CGGCCG	1 cut(s)	52
Eco72I	CACGTG	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	223
FaeI	CATG	2 cut(s)	277, 319
FaiI	YATR	3 cut(s)	275, 317, 348
FaqI	GGGAC	2 cut(s)	98, 133
FatI	CATG	2 cut(s)	273, 315
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	7 cut(s)	25, 55, 165, 168, 300, 365, 463
FokI	GGATG	2 cut(s)	320, 443
Fsp4HI	GCNGC	7 cut(s)	25, 55, 165, 168, 300, 365, 463
FspBI	CTAG	1 cut(s)	499
GluI	GCNGC	7 cut(s)	25, 55, 165, 168, 300, 365, 463
GsuI	CTGGAG	2 cut(s)	239, 394
HaeIII	GGCC	4 cut(s)	54, 164, 225, 320
HapII	CCGG	4 cut(s)	117, 312, 435, 459
HgaI	GACGC	3 cut(s)	62, 100, 130
Hin1II	CATG	2 cut(s)	277, 319
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	4 cut(s)	117, 312, 435, 459
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	16, 33, 103, 307
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	5 cut(s)	37, 40, 43, 185, 364
HpyAV	CCTTC	3 cut(s)	58, 219, 289
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	2 cut(s)	183, 400
HpyCH4V	TGCA	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 173, 308, 317, 326
HpyF3I	CTNAG	2 cut(s)	330, 473
HpySE526I	ACGT	2 cut(s)	183, 400
Hsp92II	CATG	2 cut(s)	277, 319
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	336
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	3 cut(s)	298, 316, 421
MaeI	CTAG	1 cut(s)	499
MaeII	ACGT	2 cut(s)	183, 400
MaeIII	GTNAC	2 cut(s)	5, 350
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	2 cut(s)	56, 81
MnlI	CCTC	8 cut(s)	143, 154, 214, 236, 276, 421, 460, 481
MroNI	GCCGGC	1 cut(s)	311
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	170, 334
MspI	CCGG	4 cut(s)	117, 312, 435, 459
MspR9I	CCNGG	2 cut(s)	117, 118
Mva1269I	GAATGC	1 cut(s)	411
MvnI	CGCG	3 cut(s)	111, 170, 180
MwoI	GCNNNNNNNGC	5 cut(s)	164, 173, 308, 317, 326
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	2 cut(s)	117, 118
NdeII	GATC	1 cut(s)	336
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	2 cut(s)	277, 319
NmeAIII	GCCGAG	3 cut(s)	120, 184, 306
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PctI	GAATGC	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	313
PkrI	GCNGC	7 cut(s)	26, 56, 166, 169, 301, 366, 464
PleI	GAGTC	1 cut(s)	208
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	401
PscI	ACATGT	1 cut(s)	273
PspCI	CACGTG	1 cut(s)	401
PspPI	GGNCC	2 cut(s)	127, 223
PvuII	CAGCTG	1 cut(s)	334
SacII	CCGCGG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	7 cut(s)	25, 55, 165, 168, 300, 365, 463
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	2 cut(s)	127, 223
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	117, 118
SetI	ASST	7 cut(s)	186, 245, 287, 336, 359, 403, 474
SfaNI	GCATC	3 cut(s)	298, 316, 421
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	127
SmaI	CCCGGG	1 cut(s)	118
SspMI	CTAG	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	115, 116
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	2 cut(s)	186, 403
TaqI	TCGA	3 cut(s)	212, 287, 482
TaqII	GACCGA	1 cut(s)	59
TauI	GCSGC	6 cut(s)	57, 167, 170, 302, 367, 465
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	160, 421
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	402
TspMI	CCCGGG	1 cut(s)	116
TspRI	CASTG	2 cut(s)	160, 421
VpaK11BI	GGWCC	1 cut(s)	127
XceI	RCATGY	1 cut(s)	277
XmaI	CCCGGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.