Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001377.1

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Reverse (-)

22389 .. 23141

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001377.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgagttacagttcagaagacaacagcagtctgatgacggccaggaacggccgtaagttgaagggagtgtgtcaaagaaaatgggacaagtgggtgtcggaaatccgcgtcctcggcatgcaggaccgcctctggcttagctctttctccaatgctaaggccgccgccgtggcttgcgacgttgcttactattgcttgcgtaagcattggactttggagagcctcaactttcctacaatcttgccgtgttcggttaatcaagcggcgaacagcagcagtccgacgacggcagccgggaatggccgcaagttgaagggagtgcgtcaaagaaaatggggcaagtgggtgtcggaaattcgcgtccccggcaagcaggaccgcctctggctcggctctttctccactgccgaggccgccgccgtggctcgtgacgttgcttactattgcttgcgtaagccttcgactctggagggcctcaactttcctacagtcttgccgtgttcactgatcaatgcttatagtaactgctcgtcatcgccgcagaactggagacaggccaacggaagtgagccacgtggaatgcagagcggtgggtgttgggacaacgtcggtgagagttcatcagccactactggcggcgtggcgctgagtatttcgattgaagattatctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

224

Amino Acids

24.56

Weight (kDa)

9.35

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	588
AccII	CGCG	2 cut(s)	108, 360
AcoI	YGGCCR	3 cut(s)	39, 49, 301
AcsI	RAATTY	1 cut(s)	354
AcvI	CACGTG	1 cut(s)	575
AgsI	TTSAA	3 cut(s)	61, 313, 662
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	544
AoxI	GGCC	7 cut(s)	39, 49, 159, 301, 411, 472, 555
ApeKI	GCWGC	2 cut(s)	273, 290
ApoI	RAATTY	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	646
AspS9I	GGNCC	3 cut(s)	124, 376, 472
AsuC2I	CCSGG	2 cut(s)	295, 366
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	124, 376
BauI	CACGAG	1 cut(s)	426
BbrPI	CACGTG	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	285, 302
BceAI	ACGGC	8 cut(s)	36, 54, 64, 152, 229, 303, 404, 481
BciT130I	CCWGG	1 cut(s)	43
BclI	TGATCA	1 cut(s)	507
BcnI	CCSGG	2 cut(s)	295, 366
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	1 cut(s)	673
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	647
BglI	GCCNNNNNGGC	2 cut(s)	170, 422
BlpI	GCTNAGC	1 cut(s)	137
Bme1390I	CCNGG	3 cut(s)	43, 295, 366
Bme18I	GGWCC	2 cut(s)	124, 376
BmgT120I	GGNCC	3 cut(s)	124, 376, 472
BmrFI	CCNGG	3 cut(s)	43, 295, 366
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	488, 568
Bpu10I	CCTNAGC	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuMI	CCSGG	2 cut(s)	295, 366
BsaAI	YACGTR	1 cut(s)	575
BsaJI	CCNNGG	5 cut(s)	112, 168, 364, 408, 420
Bse1I	ACTGG	2 cut(s)	551, 637
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	5 cut(s)	112, 168, 364, 408, 420
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	2 cut(s)	551, 637
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	285, 302
Bsh1236I	CGCG	2 cut(s)	108, 360
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	7 cut(s)	41, 51, 161, 303, 413, 474, 557
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	294, 366
BslFI	GGGAC	3 cut(s)	98, 347, 614
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	3 cut(s)	98, 347, 614
BsmI	GAATGC	1 cut(s)	585
BsnI	GGCC	7 cut(s)	41, 51, 161, 303, 413, 474, 557
Bsp143I	GATC	1 cut(s)	507
Bsp1720I	GCTNAGC	1 cut(s)	137
BspANI	GGCC	7 cut(s)	41, 51, 161, 303, 413, 474, 557
BspCNI	CTCAG	1 cut(s)	639
BspFNI	CGCG	2 cut(s)	108, 360
BsrBI	CCGCTC	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	551, 637
BssECI	CCNNGG	5 cut(s)	112, 168, 364, 408, 420
BssMI	GATC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	11, 490
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	5 cut(s)	119, 175, 197, 371, 449
BstDEI	CTNAG	3 cut(s)	137, 156, 647
BstDSI	CCRYGG	2 cut(s)	168, 420
BstFNI	CGCG	2 cut(s)	108, 360
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	1 cut(s)	510
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	1 cut(s)	507
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 161, 170, 366, 413, 422
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	3 cut(s)	41, 293, 364
BstSFI	CTRYAG	1 cut(s)	486
BstUI	CGCG	2 cut(s)	108, 360
BstV1I	GCAGC	2 cut(s)	285, 302
BstV2I	GAAGAC	1 cut(s)	24
BstZI	CGGCCG	1 cut(s)	49
BsuRI	GGCC	7 cut(s)	41, 51, 161, 303, 413, 474, 557
BtgI	CCRYGG	2 cut(s)	168, 420
BtgZI	GCGATG	1 cut(s)	519
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	402, 503
Cac8I	GCNNGC	5 cut(s)	119, 175, 197, 371, 449
CfoI	GCGC	1 cut(s)	646
Cfr13I	GGNCC	3 cut(s)	124, 376, 472
CseI	GACGC	3 cut(s)	97, 311, 349
CviAII	CATG	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	137, 156, 647
DpnI	GATC	1 cut(s)	509
DpnII	GATC	1 cut(s)	507
EaeI	YGGCCR	3 cut(s)	39, 49, 301
EagI	CGGCCG	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	124, 376
Eco52I	CGGCCG	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	121
FaiI	YATR	2 cut(s)	119, 519
FaqI	GGGAC	3 cut(s)	98, 347, 614
FatI	CATG	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	507
FspBI	CTAG	1 cut(s)	673
GlaI	GCGC	1 cut(s)	645
GsuI	CTGGAG	2 cut(s)	488, 568
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	7 cut(s)	41, 51, 161, 303, 413, 474, 557
HapII	CCGG	2 cut(s)	294, 366
HgaI	GACGC	3 cut(s)	97, 311, 349
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	2 cut(s)	294, 366
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	5 cut(s)	16, 33, 100, 282, 352
Hpy188III	TCNNGA	2 cut(s)	428, 467
Hpy8I	GTNNAC	1 cut(s)	503
Hpy99I	CGWCG	4 cut(s)	182, 286, 289, 611
HpyAV	CCTTC	3 cut(s)	55, 307, 468
HpyCH4III	ACNGT	2 cut(s)	11, 490
HpyCH4IV	ACGT	4 cut(s)	180, 432, 574, 606
HpyCH4V	TGCA	2 cut(s)	121, 583
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 161, 170, 366, 413, 422
HpyF3I	CTNAG	3 cut(s)	137, 156, 647
HpySE526I	ACGT	4 cut(s)	180, 432, 574, 606
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	1 cut(s)	507
Lsp1109I	GCAGC	2 cut(s)	285, 302
MaeI	CTAG	1 cut(s)	673
MaeII	ACGT	4 cut(s)	180, 432, 574, 606
MaeIII	GTNAC	3 cut(s)	5, 428, 521
MalI	GATC	1 cut(s)	509
MbiI	CCGCTC	1 cut(s)	588
MboI	GATC	1 cut(s)	507
MboII	GAAGA	2 cut(s)	29, 674
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	457
MmeI	TCCRAC	3 cut(s)	78, 305, 330
MnlI	CCTC	7 cut(s)	122, 140, 233, 392, 403, 463, 485
MseI	TTAA	1 cut(s)	255
MspI	CCGG	2 cut(s)	294, 366
MspR9I	CCNGG	3 cut(s)	43, 295, 366
Mva1269I	GAATGC	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	108, 360
MwoI	GCNNNNNNNGC	6 cut(s)	114, 161, 170, 366, 413, 422
NciI	CCSGG	2 cut(s)	295, 366
NdeII	GATC	1 cut(s)	507
NlaIII	CATG	1 cut(s)	121
NmeAIII	GCCGAG	3 cut(s)	93, 369, 433
NmuCI	GTSAC	1 cut(s)	428
NspI	RCATGY	1 cut(s)	121
PaeI	GCATGC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	585
PflFI	GACNNNGTC	1 cut(s)	605
PleI	GAGTC	1 cut(s)	457
PmaCI	CACGTG	1 cut(s)	575
PmlI	CACGTG	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	41
PspCI	CACGTG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	3 cut(s)	124, 376, 472
PsyI	GACNNNGTC	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	507
Sau96I	GGNCC	3 cut(s)	124, 376, 472
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	3 cut(s)	43, 295, 366
SetI	ASST	5 cut(s)	143, 183, 435, 577, 609
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	2 cut(s)	124, 376
SphI	GCATGC	1 cut(s)	121
Sse9I	AATT	1 cut(s)	354
SspMI	CTAG	1 cut(s)	673
StyD4I	CCNGG	3 cut(s)	41, 293, 364
TaaI	ACNGT	2 cut(s)	11, 490
TaiI	ACGT	4 cut(s)	183, 435, 577, 609
TaqI	TCGA	2 cut(s)	461, 656
TasI	AATT	1 cut(s)	354
TauI	GCSGC	8 cut(s)	164, 167, 266, 306, 416, 419, 541, 639
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	409, 510
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	2 cut(s)	273, 290
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	609
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	2 cut(s)	409, 510
Tth111I	GACNNNGTC	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	124, 376
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.