Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

27700905 .. 27701432

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1214100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGTTACAGTTCGGAAGAAAGCGGGAGTCCTCCATGCAGCACATCAAACAGAAAACTCAAGGGGGTGCGCCAACGAAAATGGGGCAAGTGGGTGTCCGAAATCCGAGTTCCGGGGACCCGAGACCGGCTTTGGTTAGGCACCTTCTCCACCGCAGAGGCGGCAGCGGTGGCTCGAGACGTTGGGTATTATTGCTTGCGTCGACCTTCCACGTTGGAAGGCCTTAACTTCCCGTTGAGGTTACCGTCTTGTGTGAGGGATGATATGTCGCCCAGGTCGGTGCAGAAGGCAGCTTCAGATGCTGGCATGGCAGTGGATGCTCAGCTGATTGCCAACAAGTCCCCGCCGCCGCAGCCAGCTGGAACTGGAAGCAATGCGGTTGAGACGACTGAGTTTCGGGAAAATGGTTATATGGGAGAGACTTCGACTTCTACTTCTATGAGCAGTTGGGGAGGAGGACATGGGTTTGGCAATGGCGGTGATCATCAGGGGTGCTTGAGCATTTCCGTTGAAGATTATGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

176

Amino Acids

18.79

Weight (kDa)

6.73

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	19 - 56	1.1e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	202
AciI	CCGC	9 cut(s)	24, 153, 161, 167, 344, 347, 350, 377, 477
AcuI	CTGAAG	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	112, 126
AgsI	TTSAA	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	293, 325, 359
AluI	AGCT	3 cut(s)	293, 325, 359
Alw26I	GTCTC	4 cut(s)	117, 171, 377, 413
AlwNI	CAGNNNCTG	1 cut(s)	302
Ama87I	CYCGRG	2 cut(s)	120, 174
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	4 cut(s)	39, 164, 290, 352
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	491
AvaI	CYCGRG	2 cut(s)	120, 174
AvaII	GGWCC	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	140
BbvI	GCAGC	4 cut(s)	51, 176, 302, 364
BciT130I	CCWGG	1 cut(s)	274
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	4 cut(s)	117, 171, 377, 413
BisI	GCNGC	7 cut(s)	40, 162, 165, 291, 347, 350, 353
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	7 cut(s)	41, 163, 166, 292, 348, 351, 354
Bme1390I	CCNGG	2 cut(s)	114, 274
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	2 cut(s)	120, 174
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	3 cut(s)	118, 119, 142
BmrFI	CCNGG	2 cut(s)	114, 274
BmsI	GCATC	2 cut(s)	289, 307
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	2 cut(s)	44, 517
BpuMI	CCSGG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	113, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 126
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	2 cut(s)	379, 478
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	113, 272
BseGI	GGATG	2 cut(s)	265, 322
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	112, 126
BseMI	GCAATG	2 cut(s)	379, 478
BseMII	CTCAG	2 cut(s)	335, 381
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	468
BseXI	GCAGC	4 cut(s)	51, 176, 302, 364
BsgI	GTGCAG	1 cut(s)	302
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	140
BsiHKCI	CYCGRG	2 cut(s)	120, 174
BsiSI	CCGG	2 cut(s)	113, 127
BslFI	GGGAC	2 cut(s)	130, 325
BslI	CCNNNNNNNGG	2 cut(s)	112, 126
BsmAI	GTCTC	4 cut(s)	117, 171, 377, 413
BsmBI	CGTCTC	2 cut(s)	171, 377
BsmFI	GGGAC	2 cut(s)	130, 325
BsnI	GGCC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	2 cut(s)	120, 174
Bsp143I	GATC	2 cut(s)	481, 520
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	9 cut(s)	24, 153, 161, 167, 344, 347, 350, 377, 477
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	334, 382
BspLI	GGNNCC	3 cut(s)	118, 119, 142
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	379, 478
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	113, 272
BssMI	GATC	2 cut(s)	481, 520
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	11, 246
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	197, 304, 357
BstDEI	CTNAG	2 cut(s)	321, 390
BstEII	GGTNACC	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	265, 322
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	484, 523
BstMAI	GTCTC	4 cut(s)	117, 171, 377, 413
BstMBI	GATC	2 cut(s)	481, 520
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 170, 299, 308, 317, 352
BstNI	CCWGG	1 cut(s)	274
BstPI	GGTNACC	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	112, 272
BstV1I	GCAGC	4 cut(s)	51, 176, 302, 364
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	265, 322
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	197, 304, 357
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	1 cut(s)	188
CviAII	CATG	3 cut(s)	36, 307, 461
CviJI	RGCY	7 cut(s)	130, 173, 222, 293, 325, 355, 359
CviKI_1	RGCY	7 cut(s)	130, 173, 222, 293, 325, 355, 359
DdeI	CTNAG	2 cut(s)	321, 390
DpnI	GATC	2 cut(s)	483, 522
DpnII	GATC	2 cut(s)	481, 520
Eco147I	AGGCCT	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	2 cut(s)	120, 174
Eco91I	GGTNACC	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	117
EcoO65I	GGTNACC	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	272
Esp3I	CGTCTC	2 cut(s)	171, 377
FaeI	CATG	3 cut(s)	39, 310, 464
FaiI	YATR	8 cut(s)	37, 266, 308, 411, 413, 440, 462, 519
FaqI	GGGAC	2 cut(s)	130, 325
FatI	CATG	3 cut(s)	35, 306, 460
FauI	CCCGC	2 cut(s)	17, 351
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	7 cut(s)	40, 162, 165, 291, 347, 350, 353
FokI	GGATG	2 cut(s)	272, 329
Fsp4HI	GCNGC	7 cut(s)	40, 162, 165, 291, 347, 350, 353
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	7 cut(s)	40, 162, 165, 291, 347, 350, 353
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	2 cut(s)	113, 127
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	39, 310, 464
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	2 cut(s)	113, 127
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	4 cut(s)	16, 100, 107, 298
Hpy188III	TCNNGA	2 cut(s)	176, 398
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	4 cut(s)	154, 212, 216, 280
HpyCH4III	ACNGT	2 cut(s)	11, 246
HpyCH4IV	ACGT	2 cut(s)	180, 212
HpyCH4V	TGCA	2 cut(s)	39, 283
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 170, 299, 308, 317, 352
HpyF3I	CTNAG	2 cut(s)	321, 390
HpySE526I	ACGT	2 cut(s)	180, 212
Hsp92II	CATG	3 cut(s)	39, 310, 464
HspAI	GCGC	1 cut(s)	70
KflI	GGGWCCC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	481, 520
LpnPI	CCDG	9 cut(s)	126, 140, 259, 286, 288, 345, 351, 369, 473
Lsp1109I	GCAGC	4 cut(s)	51, 176, 302, 364
LweI	GCATC	2 cut(s)	289, 307
MaeII	ACGT	2 cut(s)	180, 212
MaeIII	GTNAC	2 cut(s)	5, 240
MalI	GATC	2 cut(s)	483, 522
MboI	GATC	2 cut(s)	481, 520
MboII	GAAGA	2 cut(s)	29, 524
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	6 cut(s)	42, 151, 231, 249, 446, 449
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	3 cut(s)	167, 325, 359
MspI	CCGG	2 cut(s)	113, 127
MspR9I	CCNGG	2 cut(s)	114, 274
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	6 cut(s)	161, 170, 299, 308, 317, 352
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	2 cut(s)	481, 520
NlaIII	CATG	3 cut(s)	39, 310, 464
NlaIV	GGNNCC	3 cut(s)	118, 119, 142
PaeR7I	CTCGAG	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	222
PkrI	GCNGC	7 cut(s)	41, 163, 166, 292, 348, 351, 354
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	272
PspEI	GGTNACC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	118, 119, 142
PspPI	GGNCC	1 cut(s)	117
PspPPI	RGGWCCY	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	302
PvuII	CAGCTG	2 cut(s)	325, 359
RseI	CAYNNNNRTG	1 cut(s)	311
SalI	GTCGAC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	7 cut(s)	40, 162, 165, 291, 347, 350, 353
Sau3AI	GATC	2 cut(s)	481, 520
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	114, 274
SetI	ASST	9 cut(s)	146, 183, 208, 215, 242, 278, 295, 327, 361
SfaNI	GCATC	2 cut(s)	289, 307
Sfr274I	CTCGAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	3 cut(s)	59, 174, 496
SmoI	CTYRAG	3 cut(s)	59, 174, 496
SseBI	AGGCCT	1 cut(s)	222
SsiI	CCGC	9 cut(s)	24, 153, 161, 167, 344, 347, 350, 377, 477
StuI	AGGCCT	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	112, 272
TaaI	ACNGT	2 cut(s)	11, 246
TaiI	ACGT	2 cut(s)	183, 215
TaqI	TCGA	3 cut(s)	175, 202, 425
TauI	GCSGC	3 cut(s)	164, 349, 352
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	4 cut(s)	39, 164, 290, 352
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	117
XhoI	CTCGAG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.