Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Forward (+)

35792641 .. 35793204

Gene Structure 564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGTTACAGTTCGGAAGAAGGCGGGAGTCCATGCAGCACAGCAAACAGAAAACTCAAGGGGGTGCGCCAACAGAAATGGGGCAAGTGGGTGTCCGAAATCCGTGTTCCGAGGACCCAAGACCGGCTTTGGTTAGGCTCCTTCTCCACGGCAGAGGCGGCAGCGGTGGCTCGAGACGTTGCGTATTATTGCTTGCGTCGACCTTCCACGTTGGAAGGCCTTAACTTCCCGTTGGAGTTACCGTCTTGTGCGAGGGATGATATGTCGCCCAGGTCGGTGCAGAAGGCAGCCTCGGATGCTGGCATGGCAGTTGATGCTCAGCTGATTGCCAACAAGTCGCAGCCGCCGCAGCCAGCTGGAACGGGAAGCAATGAGGTTGAGACGACTGAGTTTTGGGAAGATGGTTATGTGGGAGAGAGTTCTACTTCTACTTCTACTTCTAGGGGCAGTTGGGGAGGAGGACATGGATTTGGCAACGGCGGTGATCATCAAGGGGGTTTGAGCATTTCCATTGACGATTATGATTTGAGCATTTCCATTGACGATTATGATCTCCAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

188

Amino Acids

20.1

Weight (kDa)

4.74

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	18 - 60	1.5e-07	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AciI	CCGC	6 cut(s)	24, 158, 164, 344, 347, 480
AfiI	CCNNNNNNNGG	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	2 cut(s)	322, 356
AluI	AGCT	2 cut(s)	322, 356
Alw26I	GTCTC	2 cut(s)	168, 374
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	5 cut(s)	36, 161, 287, 340, 349
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	494
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	114
BbvI	GCAGC	5 cut(s)	48, 173, 299, 352, 361
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	2 cut(s)	165, 493
BciT130I	CCWGG	1 cut(s)	271
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	168, 374
BfaI	CTAG	1 cut(s)	441
BisI	GCNGC	8 cut(s)	37, 159, 162, 288, 341, 344, 347, 350
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	8 cut(s)	38, 160, 163, 289, 342, 345, 348, 351
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	116, 139
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	2 cut(s)	286, 304
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	549
BsaJI	CCNNGG	4 cut(s)	110, 147, 269, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	4 cut(s)	110, 147, 269, 291
BseGI	GGATG	2 cut(s)	262, 301
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	332, 378
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	5 cut(s)	48, 173, 299, 352, 361
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	168, 374
BsmBI	CGTCTC	2 cut(s)	168, 374
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	484, 550
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	6 cut(s)	24, 158, 164, 344, 347, 480
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	331, 379
BspLI	GGNNCC	2 cut(s)	116, 139
BsrDI	GCAATG	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	110, 147, 269, 291
BssMI	GATC	2 cut(s)	484, 550
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	11, 243
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	194, 301, 354
BstDEI	CTNAG	2 cut(s)	318, 387
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	262, 301
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	487, 553
BstMAI	GTCTC	2 cut(s)	168, 374
BstMBI	GATC	2 cut(s)	484, 550
BstMWI	GCNNNNNNNGC	7 cut(s)	158, 167, 296, 305, 314, 346, 349
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstV1I	GCAGC	5 cut(s)	48, 173, 299, 352, 361
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	262, 301
Cac8I	GCNNGC	3 cut(s)	194, 301, 354
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	185
CviAII	CATG	3 cut(s)	33, 304, 464
CviJI	RGCY	9 cut(s)	127, 138, 170, 219, 290, 322, 343, 352, 356
CviKI_1	RGCY	9 cut(s)	127, 138, 170, 219, 290, 322, 343, 352, 356
DdeI	CTNAG	2 cut(s)	318, 387
DpnI	GATC	2 cut(s)	486, 552
DpnII	GATC	2 cut(s)	484, 550
Eco147I	AGGCCT	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	269
Esp3I	CGTCTC	2 cut(s)	168, 374
FaeI	CATG	3 cut(s)	36, 307, 467
FaiI	YATR	7 cut(s)	34, 263, 305, 408, 465, 522, 549
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	3 cut(s)	32, 303, 463
FauI	CCCGC	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	8 cut(s)	37, 159, 162, 288, 341, 344, 347, 350
FokI	GGATG	2 cut(s)	269, 308
Fsp4HI	GCNGC	8 cut(s)	37, 159, 162, 288, 341, 344, 347, 350
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	8 cut(s)	37, 159, 162, 288, 341, 344, 347, 350
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	124
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	36, 307, 467
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	4 cut(s)	16, 97, 111, 295
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	5 cut(s)	14, 151, 209, 213, 277
HpyCH4III	ACNGT	2 cut(s)	11, 243
HpyCH4IV	ACGT	2 cut(s)	177, 209
HpyCH4V	TGCA	2 cut(s)	36, 280
HpyF10VI	GCNNNNNNNGC	7 cut(s)	158, 167, 296, 305, 314, 346, 349
HpyF3I	CTNAG	2 cut(s)	318, 387
HpySE526I	ACGT	2 cut(s)	177, 209
Hsp92II	CATG	3 cut(s)	36, 307, 467
HspAI	GCGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	484, 550
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	6 cut(s)	137, 256, 283, 285, 342, 366
Lsp1109I	GCAGC	5 cut(s)	48, 173, 299, 352, 361
LweI	GCATC	2 cut(s)	286, 304
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	177, 209
MaeIII	GTNAC	2 cut(s)	5, 237
MalI	GATC	2 cut(s)	486, 552
MboI	GATC	2 cut(s)	484, 550
MboII	GAAGA	2 cut(s)	29, 410
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	2 cut(s)	192, 213
MnlI	CCTC	7 cut(s)	105, 148, 246, 301, 367, 449, 452
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	3 cut(s)	164, 322, 356
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	7 cut(s)	158, 167, 296, 305, 314, 346, 349
NdeII	GATC	2 cut(s)	484, 550
NlaIII	CATG	3 cut(s)	36, 307, 467
NlaIV	GGNNCC	2 cut(s)	116, 139
PaeR7I	CTCGAG	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	219
PkrI	GCNGC	8 cut(s)	38, 160, 163, 289, 342, 345, 348, 351
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	116, 139
PspPI	GGNCC	1 cut(s)	114
PspPPI	RGGWCCY	1 cut(s)	114
PvuII	CAGCTG	2 cut(s)	322, 356
SalI	GTCGAC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	8 cut(s)	37, 159, 162, 288, 341, 344, 347, 350
Sau3AI	GATC	2 cut(s)	484, 550
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	7 cut(s)	180, 205, 212, 275, 324, 358, 378
SfaNI	GCATC	2 cut(s)	286, 304
Sfr274I	CTCGAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	56, 171
SmoI	CTYRAG	2 cut(s)	56, 171
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	6 cut(s)	24, 158, 164, 344, 347, 480
SspMI	CTAG	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	269
TaaI	ACNGT	2 cut(s)	11, 243
TaiI	ACGT	2 cut(s)	180, 212
TaqI	TCGA	2 cut(s)	172, 199
TauI	GCSGC	3 cut(s)	161, 346, 349
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseI	GCWGC	5 cut(s)	36, 161, 287, 340, 349
TspGWI	ACGGA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.