Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013558.1

Orthogroup ID

OG0002454

Physical Location & Seq

Genomic Coordinates Reverse (-)

31806 .. 32306

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013558.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgagttacagttcagaagacagcagcagtccgacgacggcagccgggaatggccgcaagttgaagggagtgcgtcaaagaaaatggggcaagtgggtgtcggaaattcgcgtccccggcaagcaggaccgcctctggctcggctctttctccactgccgaggccgccgccgtggctcgtgacgttgcttactattgcttgcgtaagccttcgactctggagggcctcaactttcctacagtcttgccgtgttcagttaatcaagcggcggacatgtcgccgaggtcgatacagaaggcggcttcggatgccggcatggccgttgatgctcagctgatcaatgctaatagtaacagctcgtcgcagcagaatgggagacaggccaacggaagtgagccacaagtaatgcagagcgacgggtgttgggaggataccggtgagagttcatcagccaataccggcggcgaggcgctgagcatttcgattgaagattatctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

166

Amino Acids

17.66

Weight (kDa)

5.19

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22810 AT1G71520
fragaria_vesca	FvH4_5g33180
malus_domestica	MD08G1214100.v1.1 MD08G1214400.v1.1 MD15G1397400.v1.1
prunus_persica	Prupe.1G546100_v2.0.a1
pyrus_communis	pycom08g18380 pycom08g18430 pycom15g35720
rosa_chinensis	RchiOBHm_Chr7g0231481 RchiOBHm_Chr7g0231501
rosa_laevigata	RLG00000001414 RLG00000001415 RLG00000001416
rosa_multiflora	Rmu_sc0001377.1_g000005 Rmu_sc0001377.1_g000009 Rmu_sc0001377.1_g000011 Rmu_sc0013558.1_g000004 Rmu_sc0013558.1_g000006 Rmu_sc0042359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229160 Rroxscaffold_3G00229190
rosa_rugosa	Rorug07G0266800 Rorug07G0266900 Rorug07G0267000
rosa_samantha	Rh7AG421200 Rh7AG421300 Rh7BG395700 Rh7BG395800 Rh7BG395900 Rh7BG396000 Rh7CG441400 Rh7CG441500 Rh7DG413800 Rh7DG413900 Rh7DG414000
rosa_wichuraiana	Rw7G034760 Rw7G034770 Rw7G034960 Rw7G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	8 cut(s)	55, 130, 165, 168, 266, 269, 299, 462
AcoI	YGGCCR	2 cut(s)	52, 318
AcsI	RAATTY	1 cut(s)	105
AflIII	ACRYGT	1 cut(s)	273
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	2 cut(s)	64, 488
AluBI	AGCT	2 cut(s)	334, 357
AluI	AGCT	2 cut(s)	334, 357
Alw26I	GTCTC	1 cut(s)	370
AoxI	GGCC	5 cut(s)	52, 162, 223, 318, 381
ApeKI	GCWGC	3 cut(s)	24, 41, 364
ApoI	RAATTY	1 cut(s)	105
AsiGI	ACCGGT	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	2 cut(s)	127, 223
AsuC2I	CCSGG	2 cut(s)	46, 117
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	36, 53, 376
BceAI	ACGGC	4 cut(s)	54, 155, 232, 305
BciVI	GTATCC	1 cut(s)	424
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	2 cut(s)	46, 117
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	499
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	424
BglI	GCCNNNNNGGC	2 cut(s)	173, 317
BisI	GCNGC	9 cut(s)	25, 42, 55, 165, 168, 267, 300, 365, 463
BlpI	GCTNAGC	2 cut(s)	330, 473
BlsI	GCNGC	9 cut(s)	26, 43, 56, 166, 169, 268, 301, 366, 464
Bme1390I	CCNGG	2 cut(s)	46, 117
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	127, 223
BmrFI	CCNGG	2 cut(s)	46, 117
BmsI	GCATC	2 cut(s)	298, 316
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	239
Bpu1102I	GCTNAGC	2 cut(s)	330, 473
BpuMI	CCSGG	2 cut(s)	46, 117
BsaJI	CCNNGG	4 cut(s)	115, 159, 171, 281
BsaWI	WCCGGW	1 cut(s)	434
Bse118I	RCCGGY	3 cut(s)	311, 434, 458
BseDI	CCNNGG	4 cut(s)	115, 159, 171, 281
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	344, 464
BseXI	GCAGC	3 cut(s)	36, 53, 376
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	5 cut(s)	54, 164, 225, 320, 383
BshTI	ACCGGT	1 cut(s)	434
BsiSI	CCGG	5 cut(s)	45, 117, 312, 435, 459
BslFI	GGGAC	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	5 cut(s)	54, 164, 225, 320, 383
Bsp143I	GATC	1 cut(s)	336
Bsp1720I	GCTNAGC	2 cut(s)	330, 473
BspACI	CCGC	8 cut(s)	55, 130, 165, 168, 266, 269, 299, 462
BspANI	GGCC	5 cut(s)	54, 164, 225, 320, 383
BspCNI	CTCAG	2 cut(s)	343, 465
BspFNI	CGCG	1 cut(s)	111
BsrFI	RCCGGY	3 cut(s)	311, 434, 458
BssAI	RCCGGY	3 cut(s)	311, 434, 458
BssECI	CCNNGG	4 cut(s)	115, 159, 171, 281
BssMI	GATC	1 cut(s)	336
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	11, 241
BstC8I	GCNNGC	3 cut(s)	122, 200, 313
BstDEI	CTNAG	2 cut(s)	330, 473
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 164, 173, 308, 317, 326
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	44, 115
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	36, 53, 376
BstV2I	GAAGAC	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	5 cut(s)	54, 164, 225, 320, 383
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	122, 200, 313
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	3 cut(s)	311, 434, 458
Cfr13I	GGNCC	2 cut(s)	127, 223
CseI	GACGC	2 cut(s)	62, 100
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	2 cut(s)	274, 316
DdeI	CTNAG	2 cut(s)	330, 473
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	2 cut(s)	52, 318
EciI	GGCGGA	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	223
FaeI	CATG	2 cut(s)	277, 319
FaiI	YATR	2 cut(s)	275, 317
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	2 cut(s)	273, 315
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	9 cut(s)	25, 42, 55, 165, 168, 267, 300, 365, 463
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	9 cut(s)	25, 42, 55, 165, 168, 267, 300, 365, 463
FspBI	CTAG	1 cut(s)	499
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	9 cut(s)	25, 42, 55, 165, 168, 267, 300, 365, 463
GsuI	CTGGAG	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	5 cut(s)	54, 164, 225, 320, 383
HapII	CCGG	5 cut(s)	45, 117, 312, 435, 459
HgaI	GACGC	2 cut(s)	62, 100
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	2 cut(s)	277, 319
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	5 cut(s)	45, 117, 312, 435, 459
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	16, 33, 103, 307
Hpy188III	TCNNGA	2 cut(s)	179, 218
Hpy99I	CGWCG	4 cut(s)	37, 40, 364, 419
HpyAV	CCTTC	3 cut(s)	58, 219, 289
HpyCH4III	ACNGT	2 cut(s)	11, 241
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 164, 173, 308, 317, 326
HpyF3I	CTNAG	2 cut(s)	330, 473
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	277, 319
HspAI	GCGC	1 cut(s)	470
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	9 cut(s)	58, 110, 121, 130, 203, 325, 365, 448, 472
Lsp1109I	GCAGC	3 cut(s)	36, 53, 376
LweI	GCATC	2 cut(s)	298, 316
MaeI	CTAG	1 cut(s)	499
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	5, 179, 350
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	2 cut(s)	29, 500
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	2 cut(s)	56, 81
MnlI	CCTC	7 cut(s)	143, 154, 214, 236, 276, 421, 460
MroNI	GCCGGC	1 cut(s)	311
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	5 cut(s)	45, 117, 312, 435, 459
MspR9I	CCNGG	2 cut(s)	46, 117
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	6 cut(s)	117, 164, 173, 308, 317, 326
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	2 cut(s)	46, 117
NdeII	GATC	1 cut(s)	336
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	2 cut(s)	277, 319
NmeAIII	GCCGAG	3 cut(s)	120, 184, 306
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PdiI	GCCGGC	1 cut(s)	313
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	9 cut(s)	26, 43, 56, 166, 169, 268, 301, 366, 464
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PscI	ACATGT	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	127, 223
PvuII	CAGCTG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	9 cut(s)	25, 42, 55, 165, 168, 267, 300, 365, 463
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	2 cut(s)	127, 223
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	46, 117
SetI	ASST	4 cut(s)	186, 287, 336, 359
SfaNI	GCATC	2 cut(s)	298, 316
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	8 cut(s)	55, 130, 165, 168, 266, 269, 299, 462
SspMI	CTAG	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	44, 115
TaaI	ACNGT	2 cut(s)	11, 241
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	212, 287, 482
TasI	AATT	1 cut(s)	105
TauI	GCSGC	6 cut(s)	57, 167, 170, 269, 302, 465
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	3 cut(s)	24, 41, 364
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	105
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.