Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002131

Physical Location & Seq

Genomic Coordinates Forward (+)

8262925 .. 8263739

Gene Structure 815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGACGGCGTTGAAGAAGAACAGAAAGAAGAGAGGTCACGTCAGCGCCGGACATGGACGTATCGGTAAGCACCGTAAGCATCCCGGAGGTCGTGGAAACGCAGGAGGTATGCATCACCACAGGATCCTCTTCGACAAGTACCATCCAGGTTACTTCGGGAAAGTTGGTATGAGGTATTTCCACAAGCTTCGTAACAAGTTCTTTTGCCCAATCGTGAACCTGGACAAGCTATGGTCACTTGTTCCTGAAGACGTGAAGGCGAAATCGAGCAAGGATAATGTTCCGTTGATCGATGTGACGCAGCATGGTTTCTTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAACCTTTCGTTGTGAAGGCTAAGCTTATCTCTAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTTCTCACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009791 GO:0009908 GO:0009987 GO:0010229 GO:0010467 GO:0015934 GO:0019538 GO:0022414 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0055044 GO:0061458 GO:0070013 GO:0071704 GO:0090567 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

146

Amino Acids

16.29

Weight (kDa)

10.5

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	72 - 143	4e-16	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23290 AT1G70600
fragaria_vesca	FvH4_3g11450 FvH4_4g12340 FvH4_4g25520
malus_domestica	MD09G1026900.v1.1 MD13G1102000.v1.1 MD16G1102500.v1.1
prunus_persica	Prupe.1G243800_v2.0.a1 Prupe.3G291800_v2.0.a1 Prupe.4G102400_v2.0.a1
pyrus_communis	pycom111g02100 pycom13g08910 pycom17g02200
rosa_chinensis	RchiOBHm_Chr2g0172781 RchiOBHm_Chr4g0432911 RchiOBHm_Chr5g0018391
rosa_laevigata	RLG00000006803 RLG00000022138 RLG00000032359
rosa_multiflora	Rmu_sc0004464.1_g000011 Rmu_sc0004464.1_g000012 Rmu_sc0005847.1_g000003 Rmu_sc0010744.1_g000002 Rmu_sc0017459.1_g000008
rosa_roxburghii	Rroxscaffold_1G00043230 Rroxscaffold_5G00374310
rosa_rugosa	Rorug02G0561600 Rorug04G0263700
rosa_samantha	Rh2AG638700 Rh2BG652200 Rh2CG618500 Rh2DG666400 Rh4AG317800 Rh4BG326000 Rh4CG341100 Rh4DG321100 Rh5AG135500 Rh5BG134100 Rh5CG145800 Rh5DG135400
rosa_wichuraiana	Rw2G052770 Rw4G027630 Rw5G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	121, 134
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	16, 319
AjiI	CACGTC	2 cut(s)	43, 256
AjnI	CCWGG	2 cut(s)	148, 222
AluBI	AGCT	4 cut(s)	190, 232, 376, 413
AluI	AGCT	4 cut(s)	190, 232, 376, 413
AlwI	GGATC	2 cut(s)	121, 134
ApeKI	GCWGC	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	150, 224
BcnI	CCSGG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	1 cut(s)	305
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	3 cut(s)	87, 150, 224
BmgBI	CACGTC	2 cut(s)	43, 256
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	3 cut(s)	87, 150, 224
BmsI	GCATC	2 cut(s)	91, 124
BpiI	GAAGAC	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	150, 224
BseCI	ATCGAT	1 cut(s)	294
BseGI	GGATG	2 cut(s)	82, 145
BseMII	CTCAG	2 cut(s)	336, 384
BseXI	GCAGC	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	51, 87
Bsp143I	GATC	2 cut(s)	126, 291
Bsp1720I	GCTNAGC	1 cut(s)	372
BspCNI	CTCAG	2 cut(s)	337, 385
BspDI	ATCGAT	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	121, 134
BssMI	GATC	2 cut(s)	126, 291
Bst2UI	CCWGG	2 cut(s)	150, 224
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	26, 137
BstDEI	CTNAG	5 cut(s)	345, 372, 384, 393, 438
BstF5I	GGATG	2 cut(s)	82, 145
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	129, 294
BstMBI	GATC	2 cut(s)	126, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 419
BstNI	CCWGG	2 cut(s)	150, 224
BstSCI	CCNGG	3 cut(s)	85, 148, 222
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	294
BtrI	CACGTC	2 cut(s)	43, 256
BtsCI	GGATG	2 cut(s)	82, 145
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
CfoI	GCGC	1 cut(s)	50
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	56, 308
CviJI	RGCY	5 cut(s)	190, 232, 371, 376, 413
CviKI_1	RGCY	5 cut(s)	190, 232, 371, 376, 413
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	5 cut(s)	345, 372, 384, 393, 438
DpnI	GATC	2 cut(s)	128, 293
DpnII	GATC	2 cut(s)	126, 291
Eam1104I	CTCTTC	2 cut(s)	26, 137
EarI	CTCTTC	2 cut(s)	26, 137
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	148, 222
EcoT22I	ATGCAT	1 cut(s)	117
FaeI	CATG	2 cut(s)	59, 311
FaiI	YATR	5 cut(s)	57, 113, 173, 235, 309
FatI	CATG	2 cut(s)	55, 307
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	2 cut(s)	69, 132
Fsp4HI	GCNGC	1 cut(s)	305
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	51
HapII	CCGG	2 cut(s)	51, 87
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	59, 311
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HindIII	AAGCTT	2 cut(s)	188, 374
HpaII	CCGG	2 cut(s)	51, 87
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188III	TCNNGA	3 cut(s)	160, 217, 248
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	253, 361
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	3 cut(s)	42, 61, 255
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 419
HpyF3I	CTNAG	5 cut(s)	345, 372, 384, 393, 438
HpySE526I	ACGT	3 cut(s)	42, 61, 255
Hsp92II	CATG	2 cut(s)	59, 311
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	126, 291
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	2 cut(s)	91, 124
MaeII	ACGT	3 cut(s)	42, 61, 255
MaeIII	GTNAC	5 cut(s)	38, 152, 194, 237, 298
MalI	GATC	2 cut(s)	128, 293
MboI	GATC	2 cut(s)	126, 291
MboII	GAAGA	8 cut(s)	28, 31, 43, 124, 263, 307, 409, 412
MflI	RGATCY	1 cut(s)	126
MnlI	CCTC	5 cut(s)	29, 83, 101, 140, 168
Mph1103I	ATGCAT	1 cut(s)	117
MseI	TTAA	1 cut(s)	405
MspI	CCGG	2 cut(s)	51, 87
MspR9I	CCNGG	3 cut(s)	87, 150, 224
MvaI	CCWGG	2 cut(s)	150, 224
MwoI	GCNNNNNNNGC	2 cut(s)	79, 419
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	126, 291
NlaIII	CATG	2 cut(s)	59, 311
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	3 cut(s)	38, 237, 298
NsiI	ATGCAT	1 cut(s)	117
PfoI	TCCNGGA	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	148, 222
PspGI	CCWGG	2 cut(s)	148, 222
PspN4I	GGNNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	126, 291
ScrFI	CCNGG	3 cut(s)	87, 150, 224
SfaNI	GCATC	2 cut(s)	91, 124
StyD4I	CCNGG	3 cut(s)	85, 148, 222
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	3 cut(s)	45, 64, 258
TaqI	TCGA	3 cut(s)	135, 269, 294
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	3 cut(s)	38, 237, 298
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	3 cut(s)	38, 237, 298
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.