Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017459.1

Orthogroup ID

OG0002131

Physical Location & Seq

Genomic Coordinates Forward (+)

34103 .. 34543

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017459.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgacgacccggttgaagaaaaaccgaaagaagagaggccacgtcagcgccggtcacggccggatcggaaagcaccgaaagcatcccggcgggaggggaaacgccggaggaatgcaccaccaccggatcctgttcgacaagtaccacccggggtatttcggtaaagttggcatgaggtacttccacaagctccgcaacaagttctactgccccatcgtcaacgtcgacaagctctggtccctggtgccgcaggaggtcaaggacaaggccaccaaaaacgacgtgccgttgattgacgcgacgcagcacgggttcttcaagattttgggtaaggggaagctgccggcggaccggcctgtggtggtgaaggccaagctcatttcaaaggtcgccgagaagaagatcaaggaggccggcggcgctgtggttctcaccgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

146

Amino Acids

16.36

Weight (kDa)

10.61

Isoelectric Point (pI)

22.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23290 AT1G70600
fragaria_vesca	FvH4_3g11450 FvH4_4g12340 FvH4_4g25520
malus_domestica	MD09G1026900.v1.1 MD13G1102000.v1.1 MD16G1102500.v1.1
prunus_persica	Prupe.1G243800_v2.0.a1 Prupe.3G291800_v2.0.a1 Prupe.4G102400_v2.0.a1
pyrus_communis	pycom111g02100 pycom13g08910 pycom17g02200
rosa_chinensis	RchiOBHm_Chr2g0172781 RchiOBHm_Chr4g0432911 RchiOBHm_Chr5g0018391
rosa_laevigata	RLG00000006803 RLG00000022138 RLG00000032359
rosa_multiflora	Rmu_sc0004464.1_g000011 Rmu_sc0004464.1_g000012 Rmu_sc0005847.1_g000003 Rmu_sc0010744.1_g000002 Rmu_sc0017459.1_g000008
rosa_roxburghii	Rroxscaffold_1G00043230 Rroxscaffold_5G00374310
rosa_rugosa	Rorug02G0561600 Rorug04G0263700
rosa_samantha	Rh2AG638700 Rh2BG652200 Rh2CG618500 Rh2DG666400 Rh4AG317800 Rh4BG326000 Rh4CG341100 Rh4DG321100 Rh5AG135500 Rh5BG134100 Rh5CG145800 Rh5DG135400
rosa_wichuraiana	Rw2G052770 Rw4G027630 Rw5G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	299
AciI	CCGC	6 cut(s)	90, 193, 248, 347, 417, 435
AclWI	GGATC	3 cut(s)	71, 121, 134
AcoI	YGGCCR	1 cut(s)	58
AfaI	GTAC	2 cut(s)	143, 179
AfiI	CCNNNNNNNGG	2 cut(s)	93, 358
AgsI	TTSAA	3 cut(s)	16, 319, 384
AjiI	CACGTC	2 cut(s)	43, 283
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	4 cut(s)	190, 232, 340, 376
AluI	AGCT	4 cut(s)	190, 232, 340, 376
AlwI	GGATC	3 cut(s)	71, 121, 134
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	6 cut(s)	37, 58, 267, 353, 369, 411
ApeKI	GCWGC	2 cut(s)	304, 340
AspLEI	GCGC	2 cut(s)	50, 422
AspS9I	GGNCC	2 cut(s)	237, 349
AsuC2I	CCSGG	4 cut(s)	10, 87, 149, 150
AsuHPI	GGTGA	2 cut(s)	376, 424
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	237, 349
BamHI	GGATCC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	316, 327
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	73, 271
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	4 cut(s)	10, 87, 149, 150
BfaI	CTAG	1 cut(s)	439
BfoI	RGCGCY	2 cut(s)	51, 423
BisI	GCNGC	4 cut(s)	248, 305, 341, 418
BlsI	GCNGC	4 cut(s)	249, 306, 342, 419
Bme1390I	CCNGG	5 cut(s)	10, 87, 149, 150, 242
Bme18I	GGWCC	2 cut(s)	237, 349
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	2 cut(s)	43, 283
BmgT120I	GGNCC	2 cut(s)	237, 349
BmiI	GGNNCC	3 cut(s)	128, 239, 246
BmrFI	CCNGG	5 cut(s)	10, 87, 149, 150, 242
BmsI	GCATC	1 cut(s)	91
BpuMI	CCSGG	4 cut(s)	10, 87, 149, 150
BsaJI	CCNNGG	3 cut(s)	148, 149, 240
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 358
Bse118I	RCCGGY	4 cut(s)	50, 343, 351, 413
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	3 cut(s)	148, 149, 240
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	2 cut(s)	93, 358
BseX3I	CGGCCG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	316, 327
Bsh1236I	CGCG	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	6 cut(s)	39, 60, 269, 355, 371, 413
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	93, 358
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	117
BsnI	GGCC	6 cut(s)	39, 60, 269, 355, 371, 413
BsoBI	CYCGRG	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	63, 126, 402
BspACI	CCGC	6 cut(s)	90, 193, 248, 347, 417, 435
BspANI	GGCC	6 cut(s)	39, 60, 269, 355, 371, 413
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	3 cut(s)	128, 239, 246
BspPI	GGATC	3 cut(s)	71, 121, 134
BspT107I	GGYRCC	1 cut(s)	244
BsrFI	RCCGGY	4 cut(s)	50, 343, 351, 413
BssAI	RCCGGY	4 cut(s)	50, 343, 351, 413
BssECI	CCNNGG	3 cut(s)	148, 149, 240
BssMI	GATC	3 cut(s)	63, 126, 402
Bst2UI	CCWGG	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	345, 415
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	299
BstH2I	RGCGCY	2 cut(s)	51, 423
BstHHI	GCGC	2 cut(s)	50, 422
BstKTI	GATC	3 cut(s)	66, 129, 405
BstMBI	GATC	3 cut(s)	63, 126, 402
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 79, 419
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	5 cut(s)	8, 85, 147, 148, 240
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	316, 327
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	6 cut(s)	39, 60, 269, 355, 371, 413
BtrI	CACGTC	2 cut(s)	43, 283
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	345, 415
CfoI	GCGC	2 cut(s)	50, 422
Cfr10I	RCCGGY	4 cut(s)	50, 343, 351, 413
Cfr13I	GGNCC	2 cut(s)	237, 349
Cfr9I	CCCGGG	1 cut(s)	148
CpoI	CGGWCCG	1 cut(s)	349
CseI	GACGC	2 cut(s)	305, 310
Csp6I	GTAC	2 cut(s)	142, 178
CspI	CGGWCCG	1 cut(s)	349
CviAII	CATG	1 cut(s)	172
CviQI	GTAC	2 cut(s)	142, 178
DpnI	GATC	3 cut(s)	65, 128, 404
DpnII	GATC	3 cut(s)	63, 126, 402
EaeI	YGGCCR	1 cut(s)	58
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	362
EclXI	CGGCCG	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	237, 349
Eco52I	CGGCCG	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	175
FaiI	YATR	1 cut(s)	173
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	83
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	248, 305, 341, 418
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	4 cut(s)	248, 305, 341, 418
FspBI	CTAG	1 cut(s)	439
GlaI	GCGC	2 cut(s)	49, 421
GluI	GCNGC	4 cut(s)	248, 305, 341, 418
HaeII	RGCGCY	2 cut(s)	51, 423
HaeIII	GGCC	6 cut(s)	39, 60, 269, 355, 371, 413
HgaI	GACGC	2 cut(s)	305, 310
HhaI	GCGC	2 cut(s)	50, 422
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	2 cut(s)	48, 420
HinP1I	GCGC	2 cut(s)	48, 420
HincII	GTYRAC	2 cut(s)	220, 226
HindII	GTYRAC	2 cut(s)	220, 226
HphI	GGTGA	2 cut(s)	376, 424
Hpy166II	GTNNAC	2 cut(s)	220, 226
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	2 cut(s)	220, 226
Hpy99I	CGWCG	3 cut(s)	227, 284, 304
HpyAV	CCTTC	1 cut(s)	361
HpyCH4IV	ACGT	3 cut(s)	42, 222, 282
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 79, 419
HpySE526I	ACGT	3 cut(s)	42, 222, 282
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	2 cut(s)	48, 420
KroI	GCCGGC	2 cut(s)	343, 413
KroNI	GCCGGC	2 cut(s)	345, 415
Kzo9I	GATC	3 cut(s)	63, 126, 402
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	2 cut(s)	316, 327
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	439
MaeII	ACGT	3 cut(s)	42, 222, 282
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	3 cut(s)	65, 128, 404
MboI	GATC	3 cut(s)	63, 126, 402
MboII	GAAGA	5 cut(s)	28, 43, 307, 409, 412
MflI	RGATCY	1 cut(s)	126
MnlI	CCTC	6 cut(s)	29, 87, 101, 168, 247, 403
MroNI	GCCGGC	2 cut(s)	343, 413
MspR9I	CCNGG	5 cut(s)	10, 87, 149, 150, 242
Mva1269I	GAATGC	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	45, 79, 419
NaeI	GCCGGC	2 cut(s)	345, 415
NciI	CCSGG	4 cut(s)	10, 87, 149, 150
NdeII	GATC	3 cut(s)	63, 126, 402
NgoMIV	GCCGGC	2 cut(s)	343, 413
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	3 cut(s)	128, 239, 246
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	117
PdiI	GCCGGC	2 cut(s)	345, 415
PkrI	GCNGC	4 cut(s)	249, 306, 342, 419
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	128, 239, 246
PspPI	GGNCC	2 cut(s)	237, 349
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	2 cut(s)	143, 179
RsaNI	GTAC	2 cut(s)	142, 178
Rsr2I	CGGWCCG	1 cut(s)	349
RsrII	CGGWCCG	1 cut(s)	349
SalI	GTCGAC	1 cut(s)	224
SatI	GCNGC	4 cut(s)	248, 305, 341, 418
Sau3AI	GATC	3 cut(s)	63, 126, 402
Sau96I	GGNCC	2 cut(s)	237, 349
ScrFI	CCNGG	5 cut(s)	10, 87, 149, 150, 242
SfaNI	GCATC	1 cut(s)	91
SinI	GGWCC	2 cut(s)	237, 349
SmaI	CCCGGG	1 cut(s)	150
SsiI	CCGC	6 cut(s)	90, 193, 248, 347, 417, 435
SspMI	CTAG	1 cut(s)	439
StyD4I	CCNGG	5 cut(s)	8, 85, 147, 148, 240
TaiI	ACGT	3 cut(s)	45, 225, 285
TaqI	TCGA	2 cut(s)	135, 225
TauI	GCSGC	2 cut(s)	250, 420
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	304, 340
Tsp45I	GTSAC	1 cut(s)	53
TspMI	CCCGGG	1 cut(s)	148
VpaK11BI	GGWCC	2 cut(s)	237, 349
XmaI	CCCGGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.