Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002131

Physical Location & Seq

Genomic Coordinates Reverse (-)

61569421 .. 61569860

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGACGACGAGGTTCAAGAAGAACCGGAAGAAGAGAGGCCACGTCAGCGCCGGGCACGGCCGTATCGGCAAGCACCGCAAGCATCCCGGCGGGCGGGGAAACGCCGGAGGCATGCACCACCACCGGATCCTGTTGGACAAGTACCACCCGGGGTATTTCGGTAAAGTCGGGATGCGCTACTTCCACAAGCTCCGCAACAAGTTCCATTGCCCCATCGTGAACCTCGAGAAGCTCTGGTCCATGGTGCCCCAGGAGGTCAAGGACAAGGCGACCAAGGGCGAGGCTCCGATGCTCGACGTCACTCAGTTCGGGTATTTCAAGCTTCCCGGATCTCAGCCGTTGGTGGTGAAGACCAAGCTGATCTCCAAGGTCGCCGAGAAGAAGATCAAGGAGGCTGGTGGCGCCGTCGTGCTCACCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

140

Amino Acids

15.76

Weight (kDa)

10.57

Isoelectric Point (pI)

19.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	72 - 137	4.3e-09	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23290 AT1G70600
fragaria_vesca	FvH4_3g11450 FvH4_4g12340 FvH4_4g25520
malus_domestica	MD09G1026900.v1.1 MD13G1102000.v1.1 MD16G1102500.v1.1
prunus_persica	Prupe.1G243800_v2.0.a1 Prupe.3G291800_v2.0.a1 Prupe.4G102400_v2.0.a1
pyrus_communis	pycom111g02100 pycom13g08910 pycom17g02200
rosa_chinensis	RchiOBHm_Chr2g0172781 RchiOBHm_Chr4g0432911 RchiOBHm_Chr5g0018391
rosa_laevigata	RLG00000006803 RLG00000022138 RLG00000032359
rosa_multiflora	Rmu_sc0004464.1_g000011 Rmu_sc0004464.1_g000012 Rmu_sc0005847.1_g000003 Rmu_sc0010744.1_g000002 Rmu_sc0017459.1_g000008
rosa_roxburghii	Rroxscaffold_1G00043230 Rroxscaffold_5G00374310
rosa_rugosa	Rorug02G0561600 Rorug04G0263700
rosa_samantha	Rh2AG638700 Rh2BG652200 Rh2CG618500 Rh2DG666400 Rh4AG317800 Rh4BG326000 Rh4CG341100 Rh4DG321100 Rh5AG135500 Rh5BG134100 Rh5CG145800 Rh5DG135400
rosa_wichuraiana	Rw2G052770 Rw4G027630 Rw5G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	300
AccB1I	GGYRCC	2 cut(s)	244, 401
AciI	CCGC	5 cut(s)	76, 90, 94, 193, 417
AclWI	GGATC	3 cut(s)	121, 134, 337
AcoI	YGGCCR	1 cut(s)	58
AcyI	GRCGYC	2 cut(s)	297, 402
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	16, 319
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	4 cut(s)	190, 232, 322, 358
AluI	AGCT	4 cut(s)	190, 232, 322, 358
Alw21I	GWGCWC	1 cut(s)	414
AlwI	GGATC	3 cut(s)	121, 134, 337
Ama87I	CYCGRG	2 cut(s)	148, 224
AoxI	GGCC	2 cut(s)	37, 58
AspLEI	GCGC	3 cut(s)	50, 177, 404
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	5 cut(s)	52, 87, 149, 150, 327
AsuHPI	GGTGA	2 cut(s)	358, 406
AvaI	CYCGRG	2 cut(s)	148, 224
AvaII	GGWCC	1 cut(s)	237
BaeGI	GKGCMC	2 cut(s)	57, 249
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BamHI	GGATCC	1 cut(s)	126
BanI	GGYRCC	2 cut(s)	244, 401
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	414
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	4 cut(s)	45, 73, 322, 389
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	5 cut(s)	52, 87, 149, 150, 327
BfaI	CTAG	1 cut(s)	421
BfoI	RGCGCY	2 cut(s)	51, 405
BglI	GCCNNNNNGGC	1 cut(s)	66
Bme1390I	CCNGG	6 cut(s)	52, 87, 149, 150, 251, 327
Bme18I	GGWCC	1 cut(s)	237
BmeT110I	CYCGRG	2 cut(s)	148, 224
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	4 cut(s)	128, 246, 285, 403
BmrFI	CCNGG	6 cut(s)	52, 87, 149, 150, 251, 327
BmsI	GCATC	3 cut(s)	91, 162, 279
BpiI	GAAGAC	1 cut(s)	356
BpuMI	CCSGG	5 cut(s)	52, 87, 149, 150, 327
BsaHI	GRCGYC	2 cut(s)	297, 402
BsaJI	CCNNGG	6 cut(s)	148, 149, 240, 249, 273, 366
BsaWI	WCCGGW	2 cut(s)	24, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	6 cut(s)	148, 149, 240, 249, 273, 366
BseGI	GGATG	2 cut(s)	82, 177
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	317, 347
BseSI	GKGCMC	2 cut(s)	57, 249
BseX3I	CGGCCG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	39, 60
BshNI	GGYRCC	2 cut(s)	244, 401
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	2 cut(s)	148, 224
BsiSI	CCGG	7 cut(s)	25, 51, 87, 105, 124, 149, 327
BslI	CCNNNNNNNGG	1 cut(s)	93
BsnI	GGCC	2 cut(s)	39, 60
BsoBI	CYCGRG	2 cut(s)	148, 224
Bsp1286I	GDGCHC	3 cut(s)	57, 249, 414
Bsp143I	GATC	4 cut(s)	126, 329, 360, 384
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	5 cut(s)	76, 90, 94, 193, 417
BspANI	GGCC	2 cut(s)	39, 60
BspCNI	CTCAG	2 cut(s)	316, 346
BspLI	GGNNCC	4 cut(s)	128, 246, 285, 403
BspPI	GGATC	3 cut(s)	121, 134, 337
BspT107I	GGYRCC	2 cut(s)	244, 401
BsrDI	GCAATG	1 cut(s)	205
BssECI	CCNNGG	6 cut(s)	148, 149, 240, 249, 273, 366
BssMI	GATC	4 cut(s)	126, 329, 360, 384
BssNI	GRCGYC	2 cut(s)	297, 402
BssT1I	CCWWGG	3 cut(s)	240, 273, 366
Bst2UI	CCWGG	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	2 cut(s)	297, 402
BstC8I	GCNNGC	4 cut(s)	71, 80, 92, 113
BstDEI	CTNAG	2 cut(s)	303, 333
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	82, 177
BstH2I	RGCGCY	2 cut(s)	51, 405
BstHHI	GCGC	3 cut(s)	50, 177, 404
BstKTI	GATC	4 cut(s)	129, 332, 363, 387
BstMBI	GATC	4 cut(s)	126, 329, 360, 384
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 66, 75, 79, 401
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	6 cut(s)	50, 85, 147, 148, 249, 325
BstSLI	GKGCMC	2 cut(s)	57, 249
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	2 cut(s)	126, 329
BstYI	RGATCY	2 cut(s)	126, 329
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	39, 60
BtgI	CCRYGG	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	82, 177
Cac8I	GCNNGC	4 cut(s)	71, 80, 92, 113
CfoI	GCGC	3 cut(s)	50, 177, 404
Cfr13I	GGNCC	1 cut(s)	237
Cfr9I	CCCGGG	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	112, 241
CviJI	RGCY	9 cut(s)	39, 60, 190, 232, 284, 322, 337, 358, 395
CviKI_1	RGCY	9 cut(s)	39, 60, 190, 232, 284, 322, 337, 358, 395
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	303, 333
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	4 cut(s)	128, 331, 362, 386
DpnII	GATC	4 cut(s)	126, 329, 360, 384
EaeI	YGGCCR	1 cut(s)	58
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EclXI	CGGCCG	1 cut(s)	58
Eco130I	CCWWGG	3 cut(s)	240, 273, 366
Eco47I	GGWCC	1 cut(s)	237
Eco52I	CGGCCG	1 cut(s)	58
Eco88I	CYCGRG	2 cut(s)	148, 224
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	3 cut(s)	240, 273, 366
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
ErhI	CCWWGG	3 cut(s)	240, 273, 366
FaeI	CATG	2 cut(s)	115, 244
FaiI	YATR	2 cut(s)	113, 242
FatI	CATG	2 cut(s)	111, 240
FauI	CCCGC	2 cut(s)	83, 87
FokI	GGATG	2 cut(s)	69, 184
FspBI	CTAG	1 cut(s)	421
GlaI	GCGC	3 cut(s)	49, 176, 403
HaeII	RGCGCY	2 cut(s)	51, 405
HaeIII	GGCC	2 cut(s)	39, 60
HapII	CCGG	7 cut(s)	25, 51, 87, 105, 124, 149, 327
HhaI	GCGC	3 cut(s)	50, 177, 404
Hin1I	GRCGYC	2 cut(s)	297, 402
Hin1II	CATG	2 cut(s)	115, 244
Hin6I	GCGC	3 cut(s)	48, 175, 402
HinP1I	GCGC	3 cut(s)	48, 175, 402
HindIII	AAGCTT	1 cut(s)	320
HpaII	CCGG	7 cut(s)	25, 51, 87, 105, 124, 149, 327
HphI	GGTGA	2 cut(s)	358, 406
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	4 cut(s)	16, 169, 217, 226
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	3 cut(s)	10, 299, 410
HpyCH4IV	ACGT	2 cut(s)	42, 297
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 66, 75, 79, 401
HpyF3I	CTNAG	2 cut(s)	303, 333
HpySE526I	ACGT	2 cut(s)	42, 297
Hsp92I	GRCGYC	2 cut(s)	297, 402
Hsp92II	CATG	2 cut(s)	115, 244
HspAI	GCGC	3 cut(s)	48, 175, 402
KasI	GGCGCC	1 cut(s)	401
Kzo9I	GATC	4 cut(s)	126, 329, 360, 384
LmnI	GCTCC	2 cut(s)	195, 289
LweI	GCATC	3 cut(s)	91, 162, 279
MaeI	CTAG	1 cut(s)	421
MaeII	ACGT	2 cut(s)	42, 297
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	4 cut(s)	128, 331, 362, 386
MboI	GATC	4 cut(s)	126, 329, 360, 384
MboII	GAAGA	6 cut(s)	31, 40, 43, 361, 391, 394
MflI	RGATCY	2 cut(s)	126, 329
MhlI	GDGCHC	3 cut(s)	57, 249, 414
Mly113I	GGCGCC	1 cut(s)	402
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	7 cut(s)	3, 29, 101, 233, 247, 274, 385
MspI	CCGG	7 cut(s)	25, 51, 87, 105, 124, 149, 327
MspR9I	CCNGG	6 cut(s)	52, 87, 149, 150, 251, 327
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	5 cut(s)	45, 66, 75, 79, 401
NarI	GGCGCC	1 cut(s)	402
NciI	CCSGG	5 cut(s)	52, 87, 149, 150, 327
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	126, 329, 360, 384
NlaIII	CATG	2 cut(s)	115, 244
NlaIV	GGNNCC	4 cut(s)	128, 246, 285, 403
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	115
PaeI	GCATGC	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfoI	TCCNGGA	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	4 cut(s)	128, 246, 285, 403
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	2 cut(s)	126, 329
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
Sau3AI	GATC	4 cut(s)	126, 329, 360, 384
Sau96I	GGNCC	1 cut(s)	237
ScrFI	CCNGG	6 cut(s)	52, 87, 149, 150, 251, 327
SduI	GDGCHC	3 cut(s)	57, 249, 414
SfaNI	GCATC	3 cut(s)	91, 162, 279
SfoI	GGCGCC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	237
SlaI	CTCGAG	1 cut(s)	224
SmaI	CCCGGG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SphI	GCATGC	1 cut(s)	115
SsiI	CCGC	5 cut(s)	76, 90, 94, 193, 417
SspDI	GGCGCC	1 cut(s)	401
SspMI	CTAG	1 cut(s)	421
StyD4I	CCNGG	6 cut(s)	50, 85, 147, 148, 249, 325
StyI	CCWWGG	3 cut(s)	240, 273, 366
TaiI	ACGT	2 cut(s)	45, 300
TaqI	TCGA	2 cut(s)	225, 294
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspMI	CCCGGG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	237
XceI	RCATGY	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	224
XmaI	CCCGGG	1 cut(s)	148
XspI	CTAG	1 cut(s)	421
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.