Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002131

Physical Location & Seq

Genomic Coordinates Forward (+)

89101294 .. 89102708

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG666400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACGACGAGGTTCAAGAAGAACCGGAAGAAGAGAGGCCACGTCAGCGCCGGGCACGGGCGTATCGGCAAGCACCGCAAGCATCCCGGCGGGCGGGGAAACGCCGGAGGCATGCACCACCACCGGATCCTGTTCGACAAGTACCACCCGGGGTATTTCGGTAAAGTCGGGATGCGCTACTTCCACAAGCTCCGCAACAAGTTCCACTGCCCCATCGTCAACCTCGAGAAGCTCTGGTCCATGGTGCCCCAGGAGGTCAAGGACAAGGCGACCAAGGGCGATGCTCCGATGCTCGACGTCACTCAGTTCGGCTACTTCAAGGTCTTGGGCAAGGGGAAGCTTCCCGGATCTCAGCCGTTGGTTGTGAAGACCAAGCTGATCTCCAAGGTCGCCGAGAAGAAGATCAAGGAGGCTGGTGGCGCCGTCGTGCTGACCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

146

Amino Acids

16.36

Weight (kDa)

10.61

Isoelectric Point (pI)

17.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	72 - 143	8.2e-15	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23290 AT1G70600
fragaria_vesca	FvH4_3g11450 FvH4_4g12340 FvH4_4g25520
malus_domestica	MD09G1026900.v1.1 MD13G1102000.v1.1 MD16G1102500.v1.1
prunus_persica	Prupe.1G243800_v2.0.a1 Prupe.3G291800_v2.0.a1 Prupe.4G102400_v2.0.a1
pyrus_communis	pycom111g02100 pycom13g08910 pycom17g02200
rosa_chinensis	RchiOBHm_Chr2g0172781 RchiOBHm_Chr4g0432911 RchiOBHm_Chr5g0018391
rosa_laevigata	RLG00000006803 RLG00000022138 RLG00000032359
rosa_multiflora	Rmu_sc0004464.1_g000011 Rmu_sc0004464.1_g000012 Rmu_sc0005847.1_g000003 Rmu_sc0010744.1_g000002 Rmu_sc0017459.1_g000008
rosa_roxburghii	Rroxscaffold_1G00043230 Rroxscaffold_5G00374310
rosa_rugosa	Rorug02G0561600 Rorug04G0263700
rosa_samantha	Rh2AG638700 Rh2BG652200 Rh2CG618500 Rh2DG666400 Rh4AG317800 Rh4BG326000 Rh4CG341100 Rh4DG321100 Rh5AG135500 Rh5BG134100 Rh5CG145800 Rh5DG135400
rosa_wichuraiana	Rw2G052770 Rw4G027630 Rw5G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	300
AccB1I	GGYRCC	2 cut(s)	244, 419
AciI	CCGC	5 cut(s)	76, 90, 94, 193, 435
AclWI	GGATC	3 cut(s)	121, 134, 355
AcyI	GRCGYC	2 cut(s)	297, 420
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	57, 93
AgsI	TTSAA	2 cut(s)	16, 319
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	4 cut(s)	190, 232, 340, 376
AluI	AGCT	4 cut(s)	190, 232, 340, 376
AlwI	GGATC	3 cut(s)	121, 134, 355
Ama87I	CYCGRG	2 cut(s)	148, 224
AoxI	GGCC	1 cut(s)	37
AspLEI	GCGC	3 cut(s)	50, 177, 422
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	5 cut(s)	52, 87, 149, 150, 345
AvaI	CYCGRG	2 cut(s)	148, 224
AvaII	GGWCC	1 cut(s)	237
BaeGI	GKGCMC	2 cut(s)	57, 249
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BamHI	GGATCC	1 cut(s)	126
BanI	GGYRCC	2 cut(s)	244, 419
BbsI	GAAGAC	1 cut(s)	374
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	340, 407
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	5 cut(s)	52, 87, 149, 150, 345
BfaI	CTAG	1 cut(s)	439
BfoI	RGCGCY	2 cut(s)	51, 423
Bme1390I	CCNGG	6 cut(s)	52, 87, 149, 150, 251, 345
Bme18I	GGWCC	1 cut(s)	237
BmeT110I	CYCGRG	2 cut(s)	148, 224
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	3 cut(s)	128, 246, 421
BmrFI	CCNGG	6 cut(s)	52, 87, 149, 150, 251, 345
BmsI	GCATC	4 cut(s)	91, 162, 271, 279
BpiI	GAAGAC	1 cut(s)	374
BpuMI	CCSGG	5 cut(s)	52, 87, 149, 150, 345
BsaHI	GRCGYC	2 cut(s)	297, 420
BsaJI	CCNNGG	6 cut(s)	148, 149, 240, 249, 273, 384
BsaWI	WCCGGW	2 cut(s)	24, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 93
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	6 cut(s)	148, 149, 240, 249, 273, 384
BseGI	GGATG	2 cut(s)	82, 177
BseLI	CCNNNNNNNGG	2 cut(s)	57, 93
BseMII	CTCAG	2 cut(s)	317, 365
BseSI	GKGCMC	2 cut(s)	57, 249
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	2 cut(s)	244, 419
BsiHKCI	CYCGRG	2 cut(s)	148, 224
BsiSI	CCGG	7 cut(s)	25, 51, 87, 105, 124, 149, 345
BslI	CCNNNNNNNGG	2 cut(s)	57, 93
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	2 cut(s)	148, 224
Bsp1286I	GDGCHC	2 cut(s)	57, 249
Bsp143I	GATC	4 cut(s)	126, 347, 378, 402
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	5 cut(s)	76, 90, 94, 193, 435
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	316, 364
BspLI	GGNNCC	3 cut(s)	128, 246, 421
BspPI	GGATC	3 cut(s)	121, 134, 355
BspT107I	GGYRCC	2 cut(s)	244, 419
BssECI	CCNNGG	6 cut(s)	148, 149, 240, 249, 273, 384
BssMI	GATC	4 cut(s)	126, 347, 378, 402
BssNI	GRCGYC	2 cut(s)	297, 420
BssT1I	CCWWGG	3 cut(s)	240, 273, 384
Bst2UI	CCWGG	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	2 cut(s)	297, 420
BstC8I	GCNNGC	4 cut(s)	71, 80, 92, 113
BstDEI	CTNAG	2 cut(s)	303, 351
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	82, 177
BstH2I	RGCGCY	2 cut(s)	51, 423
BstHHI	GCGC	3 cut(s)	50, 177, 422
BstKTI	GATC	4 cut(s)	129, 350, 381, 405
BstMBI	GATC	4 cut(s)	126, 347, 378, 402
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 75, 79, 419
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	6 cut(s)	50, 85, 147, 148, 249, 343
BstSLI	GKGCMC	2 cut(s)	57, 249
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	2 cut(s)	126, 347
BstYI	RGATCY	2 cut(s)	126, 347
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	82, 177
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	4 cut(s)	71, 80, 92, 113
CfoI	GCGC	3 cut(s)	50, 177, 422
Cfr13I	GGNCC	1 cut(s)	237
Cfr9I	CCCGGG	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	112, 241
CviJI	RGCY	8 cut(s)	39, 190, 232, 312, 340, 355, 376, 413
CviKI_1	RGCY	8 cut(s)	39, 190, 232, 312, 340, 355, 376, 413
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	303, 351
DinI	GGCGCC	1 cut(s)	421
DpnI	GATC	4 cut(s)	128, 349, 380, 404
DpnII	GATC	4 cut(s)	126, 347, 378, 402
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	3 cut(s)	240, 273, 384
Eco47I	GGWCC	1 cut(s)	237
Eco88I	CYCGRG	2 cut(s)	148, 224
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	3 cut(s)	240, 273, 384
EgeI	GGCGCC	1 cut(s)	421
EheI	GGCGCC	1 cut(s)	421
ErhI	CCWWGG	3 cut(s)	240, 273, 384
FaeI	CATG	2 cut(s)	115, 244
FaiI	YATR	2 cut(s)	113, 242
FatI	CATG	2 cut(s)	111, 240
FauI	CCCGC	2 cut(s)	83, 87
FokI	GGATG	2 cut(s)	69, 184
FspBI	CTAG	1 cut(s)	439
GlaI	GCGC	3 cut(s)	49, 176, 421
HaeII	RGCGCY	2 cut(s)	51, 423
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	7 cut(s)	25, 51, 87, 105, 124, 149, 345
HhaI	GCGC	3 cut(s)	50, 177, 422
Hin1I	GRCGYC	2 cut(s)	297, 420
Hin1II	CATG	2 cut(s)	115, 244
Hin6I	GCGC	3 cut(s)	48, 175, 420
HinP1I	GCGC	3 cut(s)	48, 175, 420
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	338
HpaII	CCGG	7 cut(s)	25, 51, 87, 105, 124, 149, 345
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	3 cut(s)	16, 169, 226
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	3 cut(s)	10, 299, 428
HpyCH4IV	ACGT	2 cut(s)	42, 297
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 75, 79, 419
HpyF3I	CTNAG	2 cut(s)	303, 351
HpySE526I	ACGT	2 cut(s)	42, 297
Hsp92I	GRCGYC	2 cut(s)	297, 420
Hsp92II	CATG	2 cut(s)	115, 244
HspAI	GCGC	3 cut(s)	48, 175, 420
KasI	GGCGCC	1 cut(s)	419
Kzo9I	GATC	4 cut(s)	126, 347, 378, 402
LmnI	GCTCC	2 cut(s)	195, 289
LweI	GCATC	4 cut(s)	91, 162, 271, 279
MaeI	CTAG	1 cut(s)	439
MaeII	ACGT	2 cut(s)	42, 297
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	4 cut(s)	128, 349, 380, 404
MboI	GATC	4 cut(s)	126, 347, 378, 402
MboII	GAAGA	6 cut(s)	31, 40, 43, 379, 409, 412
MflI	RGATCY	2 cut(s)	126, 347
MhlI	GDGCHC	2 cut(s)	57, 249
Mly113I	GGCGCC	1 cut(s)	420
MnlI	CCTC	6 cut(s)	3, 29, 101, 233, 247, 403
MspI	CCGG	7 cut(s)	25, 51, 87, 105, 124, 149, 345
MspR9I	CCNGG	6 cut(s)	52, 87, 149, 150, 251, 345
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	4 cut(s)	45, 75, 79, 419
NarI	GGCGCC	1 cut(s)	420
NciI	CCSGG	5 cut(s)	52, 87, 149, 150, 345
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	126, 347, 378, 402
NlaIII	CATG	2 cut(s)	115, 244
NlaIV	GGNNCC	3 cut(s)	128, 246, 421
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	115
PaeI	GCATGC	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfoI	TCCNGGA	1 cut(s)	343
PluTI	GGCGCC	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	3 cut(s)	128, 246, 421
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	2 cut(s)	126, 347
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
Sau3AI	GATC	4 cut(s)	126, 347, 378, 402
Sau96I	GGNCC	1 cut(s)	237
ScrFI	CCNGG	6 cut(s)	52, 87, 149, 150, 251, 345
SduI	GDGCHC	2 cut(s)	57, 249
SfaNI	GCATC	4 cut(s)	91, 162, 271, 279
SfoI	GGCGCC	1 cut(s)	421
Sfr274I	CTCGAG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	237
SlaI	CTCGAG	1 cut(s)	224
SmaI	CCCGGG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SphI	GCATGC	1 cut(s)	115
SsiI	CCGC	5 cut(s)	76, 90, 94, 193, 435
SspDI	GGCGCC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	439
StyD4I	CCNGG	6 cut(s)	50, 85, 147, 148, 249, 343
StyI	CCWWGG	3 cut(s)	240, 273, 384
TaiI	ACGT	2 cut(s)	45, 300
TaqI	TCGA	3 cut(s)	135, 225, 294
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspMI	CCCGGG	1 cut(s)	148
TspRI	CASTG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	237
XceI	RCATGY	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	224
XmaI	CCCGGG	1 cut(s)	148
XspI	CTAG	1 cut(s)	439
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.