Prupe.4G102400_v2.0.a1

Belongs to the universal ribosomal protein uL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0002131
Physical Location & Seq
Forward (+)
5229964 .. 5230644
681 bp
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UTR
Exon/CDS
Intron
Prupe.4G102400.1

Sequence Viewer

Length: 450 bp
ATGACGACCAGTTTGAAGAAGAATCGGAAGAAGAGAGGTCACGTCAGCGCCGGCCACGGCCGAATCGGGAAGCACAGGAAGCATCCCGGTGGTCGTGGAAATGCCGGAGGCATGCACCACCACCGGATCTTGTTCGACAAGTACCACCCGGGGTATTTTGGTAAAGTCGGCATGCGCTACTTCCACAAGCTCCGCAACAAGTTCTACTGCCCCATCGTCAACGTCGACAAGCTCTGGTCTTTGGTGCCGCAGGAGGCGAAGGACAAGGCGGCGGCGAACAAAGGAAATGACGTGCCGTTGATCGACGTGACGCAGTTTGGGTACTTTAAGGTGTTGGGGAAGGGGGCGTTGCCTCAGAACCAGCCTGTTGTGGTGAAGGCCAAGCTCATTTCTAAGACCGCTGAGAAGAAGATTAAGGAAGCTGGTGGCGCTGTTGTTCTCACCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

150

Amino Acids

16.49

Weight (kDa)

10.44

Isoelectric Point (pI)

22.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 225
AciI CCGC 6 cut(s) 193, 248, 269, 272, 399, 444
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 2 cut(s) 52, 58
AfaI GTAC 2 cut(s) 143, 323
AgsI TTSAA 1 cut(s) 16
AjiI CACGTC 3 cut(s) 43, 292, 307
AluBI AGCT 4 cut(s) 190, 232, 385, 422
AluI AGCT 4 cut(s) 190, 232, 385, 422
AlwI GGATC 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 3 cut(s) 52, 58, 378
ArsI GACNNNNNNTTYG 1 cut(s) 27
AspLEI GCGC 3 cut(s) 50, 177, 431
AsuC2I CCSGG 3 cut(s) 87, 149, 150
AsuHPI GGTGA 2 cut(s) 385, 433
AvaI CYCGRG 1 cut(s) 148
BanI GGYRCC 1 cut(s) 244
BccI CCATC 1 cut(s) 221
BceAI ACGGC 2 cut(s) 73, 280
BcnI CCSGG 3 cut(s) 87, 149, 150
BfaI CTAG 1 cut(s) 448
BfoI RGCGCY 2 cut(s) 51, 432
BisI GCNGC 3 cut(s) 248, 270, 273
BlsI GCNGC 3 cut(s) 249, 271, 274
Bme1390I CCNGG 3 cut(s) 87, 149, 150
BmeT110I CYCGRG 1 cut(s) 148
BmgBI CACGTC 3 cut(s) 43, 292, 307
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 3 cut(s) 87, 149, 150
BmsI GCATC 1 cut(s) 91
BpuMI CCSGG 3 cut(s) 87, 149, 150
BsaJI CCNNGG 3 cut(s) 55, 148, 149
BsaWI WCCGGW 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 9
BseDI CCNNGG 3 cut(s) 55, 148, 149
BseGI GGATG 1 cut(s) 82
BseMII CTCAG 2 cut(s) 368, 393
BseNI ACTGG 1 cut(s) 9
BseX3I CGGCCG 1 cut(s) 58
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 3 cut(s) 54, 60, 380
BshNI GGYRCC 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 5 cut(s) 51, 87, 105, 124, 149
BsnI GGCC 3 cut(s) 54, 60, 380
BsoBI CYCGRG 1 cut(s) 148
Bsp143I GATC 2 cut(s) 126, 300
BspACI CCGC 6 cut(s) 193, 248, 269, 272, 399, 444
BspANI GGCC 3 cut(s) 54, 60, 380
BspCNI CTCAG 2 cut(s) 367, 394
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 3 cut(s) 55, 148, 149
BssMI GATC 2 cut(s) 126, 300
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 52, 113, 173
BstDEI CTNAG 3 cut(s) 354, 393, 402
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 2 cut(s) 51, 432
BstHHI GCGC 3 cut(s) 50, 177, 431
BstKTI GATC 2 cut(s) 129, 303
BstMBI GATC 2 cut(s) 126, 300
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 79, 428
BstNSI RCATGY 2 cut(s) 115, 175
BstSCI CCNGG 3 cut(s) 85, 147, 148
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BstZI CGGCCG 1 cut(s) 58
BsuRI GGCC 3 cut(s) 54, 60, 380
BtgI CCRYGG 1 cut(s) 55
BtrI CACGTC 3 cut(s) 43, 292, 307
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 3 cut(s) 52, 113, 173
CfoI GCGC 3 cut(s) 50, 177, 431
Cfr10I RCCGGY 1 cut(s) 50
Cfr9I CCCGGG 1 cut(s) 148
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 142, 322
CviAII CATG 2 cut(s) 112, 172
CviJI RGCY 8 cut(s) 54, 60, 190, 232, 364, 380, 385, 422
CviKI_1 RGCY 8 cut(s) 54, 60, 190, 232, 364, 380, 385, 422
CviQI GTAC 2 cut(s) 142, 322
DdeI CTNAG 3 cut(s) 354, 393, 402
DpnI GATC 2 cut(s) 128, 302
DpnII GATC 2 cut(s) 126, 300
EaeI YGGCCR 2 cut(s) 52, 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EclXI CGGCCG 1 cut(s) 58
Eco52I CGGCCG 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 148
FaeI CATG 2 cut(s) 115, 175
FaiI YATR 2 cut(s) 113, 173
FatI CATG 2 cut(s) 111, 171
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 248, 270, 273
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 248, 270, 273
FspBI CTAG 1 cut(s) 448
GlaI GCGC 3 cut(s) 49, 176, 430
GluI GCNGC 3 cut(s) 248, 270, 273
HaeII RGCGCY 2 cut(s) 51, 432
HaeIII GGCC 3 cut(s) 54, 60, 380
HapII CCGG 5 cut(s) 51, 87, 105, 124, 149
HgaI GACGC 1 cut(s) 319
HhaI GCGC 3 cut(s) 50, 177, 431
Hin1II CATG 2 cut(s) 115, 175
Hin6I GCGC 3 cut(s) 48, 175, 429
HinP1I GCGC 3 cut(s) 48, 175, 429
HincII GTYRAC 2 cut(s) 220, 226
HindII GTYRAC 2 cut(s) 220, 226
HinfI GANTC 2 cut(s) 22, 63
HpaII CCGG 5 cut(s) 51, 87, 105, 124, 149
HphI GGTGA 2 cut(s) 385, 433
Hpy166II GTNNAC 2 cut(s) 220, 226
Hpy188I TCNGA 2 cut(s) 27, 357
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 220, 226
Hpy99I CGWCG 2 cut(s) 227, 308
HpyAV CCTTC 3 cut(s) 253, 334, 370
HpyCH4IV ACGT 4 cut(s) 42, 222, 291, 306
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 428
HpyF3I CTNAG 3 cut(s) 354, 393, 402
HpySE526I ACGT 4 cut(s) 42, 222, 291, 306
Hsp92II CATG 2 cut(s) 115, 175
HspAI GCGC 3 cut(s) 48, 175, 429
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 126, 300
LmnI GCTCC 1 cut(s) 195
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 448
MaeII ACGT 4 cut(s) 42, 222, 291, 306
MaeIII GTNAC 2 cut(s) 38, 307
MalI GATC 2 cut(s) 128, 302
MboI GATC 2 cut(s) 126, 300
MboII GAAGA 6 cut(s) 28, 31, 40, 43, 418, 421
MflI RGATCY 1 cut(s) 126
MnlI CCTC 4 cut(s) 29, 101, 247, 363
MroNI GCCGGC 1 cut(s) 50
MseI TTAA 2 cut(s) 327, 414
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 5 cut(s) 51, 87, 105, 124, 149
MspR9I CCNGG 3 cut(s) 87, 149, 150
MwoI GCNNNNNNNGC 2 cut(s) 79, 428
NaeI GCCGGC 1 cut(s) 52
NciI CCSGG 3 cut(s) 87, 149, 150
NdeII GATC 2 cut(s) 126, 300
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 2 cut(s) 115, 175
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 38, 307
NspI RCATGY 2 cut(s) 115, 175
PaeI GCATGC 2 cut(s) 115, 175
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 22, 63
PkrI GCNGC 3 cut(s) 249, 271, 274
PspN4I GGNNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 126
RsaI GTAC 2 cut(s) 143, 323
RsaNI GTAC 2 cut(s) 142, 322
RseI CAYNNNNRTG 1 cut(s) 87
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 327, 414
SatI GCNGC 3 cut(s) 248, 270, 273
Sau3AI GATC 2 cut(s) 126, 300
ScrFI CCNGG 3 cut(s) 87, 149, 150
SfaNI GCATC 1 cut(s) 91
SmaI CCCGGG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 87
SphI GCATGC 2 cut(s) 115, 175
SsiI CCGC 6 cut(s) 193, 248, 269, 272, 399, 444
SspMI CTAG 1 cut(s) 448
StyD4I CCNGG 3 cut(s) 85, 147, 148
TaiI ACGT 4 cut(s) 45, 225, 294, 309
TaqI TCGA 3 cut(s) 135, 225, 303
TauI GCSGC 3 cut(s) 250, 272, 275
TfiI GAWTC 2 cut(s) 22, 63
Tru1I TTAA 2 cut(s) 327, 414
Tru9I TTAA 2 cut(s) 327, 414
TseFI GTSAC 2 cut(s) 38, 307
Tsp45I GTSAC 2 cut(s) 38, 307
TspMI CCCGGG 1 cut(s) 148
XceI RCATGY 2 cut(s) 115, 175
XmaI CCCGGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.