Rh4BG326000

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002131
Physical Location & Seq
Reverse (-)
49164719 .. 49165563
845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG326000.1

Sequence Viewer

Length: 441 bp
ATGACGACCCGATTCAAGAAGAACCGGAAGAAGAGAGGCCACGTCAGCGCCGGGCACGGCCGTATCGGCAAGCACCGCAAGCATCCCGGAGGTCGCGGAAACGCCGGAGGTATGCACCACCACCGCATCCTCTTCGACAAGTATCACCCGGGGTATTTCGGTAAAGTCGGTATGAGGTACTTCCACAAGCTCCGCAACAAGTTCTACTGCCCCATCGTCAACGTCGACAAGCTGTGGTCTCTGGTACCCCAGGAGGCCAAGGACAAGGCCACCAAGGACAACGTGCCCTTGATCGACGTCACTCAGCACGGATACTTCAAGATTCTCGGCAAGGGGAAGCTGCCGGTGAACCAGCCCGTCGTCGTCAAGGCCAAGCTCATCTCCAAGGTCGCTGAGAAGAAGATTAAGGAAGCCGGCGGCGCTGTGGTGCTCACTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015934 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022625 GO:0022626 GO:0030684 GO:0030687 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 ko04340 map03010 map04340
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

146

Amino Acids

16.41

Weight (kDa)

10.54

Isoelectric Point (pI)

21.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L27A PF00828 72 - 143 2.1e-16 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
Acc65I GGTACC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 96
AciI CCGC 5 cut(s) 76, 96, 124, 193, 417
AcoI YGGCCR 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 179, 246
AgsI TTSAA 2 cut(s) 16, 319
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 4 cut(s) 190, 232, 340, 376
AluI AGCT 4 cut(s) 190, 232, 340, 376
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 5 cut(s) 37, 58, 255, 267, 369
ApeKI GCWGC 1 cut(s) 340
Asp718I GGTACC 1 cut(s) 244
AspLEI GCGC 2 cut(s) 50, 422
AsuC2I CCSGG 4 cut(s) 52, 87, 149, 150
AsuHPI GGTGA 2 cut(s) 137, 358
AvaI CYCGRG 1 cut(s) 148
BaeGI GKGCMC 2 cut(s) 57, 288
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BanI GGYRCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 327
BccI CCATC 1 cut(s) 221
BceAI ACGGC 2 cut(s) 45, 73
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 251
BciVI GTATCC 1 cut(s) 305
BcnI CCSGG 4 cut(s) 52, 87, 149, 150
BcoDI GTCTC 1 cut(s) 243
BfoI RGCGCY 2 cut(s) 51, 423
BfuI GTATCC 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 66
BisI GCNGC 2 cut(s) 341, 418
BlsI GCNGC 2 cut(s) 342, 419
Bme1390I CCNGG 5 cut(s) 52, 87, 149, 150, 251
BmeT110I CYCGRG 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 5 cut(s) 52, 87, 149, 150, 251
BmsI GCATC 2 cut(s) 91, 135
BpuMI CCSGG 4 cut(s) 52, 87, 149, 150
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 6 cut(s) 148, 149, 249, 258, 273, 384
BsaWI WCCGGW 1 cut(s) 24
Bse118I RCCGGY 2 cut(s) 343, 413
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 6 cut(s) 148, 149, 249, 258, 273, 384
BseGI GGATG 2 cut(s) 82, 126
BseMII CTCAG 2 cut(s) 317, 384
BseSI GKGCMC 2 cut(s) 57, 288
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 5 cut(s) 39, 60, 257, 269, 371
BshNI GGYRCC 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 7 cut(s) 25, 51, 87, 105, 149, 344, 414
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 5 cut(s) 39, 60, 257, 269, 371
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 148
Bsp1286I GDGCHC 3 cut(s) 57, 288, 432
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 5 cut(s) 76, 96, 124, 193, 417
BspANI GGCC 5 cut(s) 39, 60, 257, 269, 371
BspCNI CTCAG 2 cut(s) 316, 385
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 243
BsrFI RCCGGY 2 cut(s) 343, 413
BssAI RCCGGY 2 cut(s) 343, 413
BssECI CCNNGG 6 cut(s) 148, 149, 249, 258, 273, 384
BssMI GATC 1 cut(s) 291
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 3 cut(s) 258, 273, 384
Bst2UI CCWGG 1 cut(s) 251
Bst6I CTCTTC 2 cut(s) 26, 137
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 3 cut(s) 71, 80, 415
BstDEI CTNAG 3 cut(s) 303, 393, 438
BstF5I GGATG 2 cut(s) 82, 126
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 2 cut(s) 51, 423
BstHHI GCGC 2 cut(s) 50, 422
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 1 cut(s) 291
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 5 cut(s) 45, 66, 75, 79, 419
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 5 cut(s) 50, 85, 147, 148, 249
BstSLI GKGCMC 2 cut(s) 57, 288
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 327
BstZI CGGCCG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 5 cut(s) 39, 60, 257, 269, 371
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 2 cut(s) 82, 126
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 3 cut(s) 71, 80, 415
CfoI GCGC 2 cut(s) 50, 422
Cfr10I RCCGGY 2 cut(s) 343, 413
Cfr9I CCCGGG 1 cut(s) 148
Csp6I GTAC 2 cut(s) 178, 245
CviQI GTAC 2 cut(s) 178, 245
DdeI CTNAG 3 cut(s) 303, 393, 438
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 26, 137
EarI CTCTTC 2 cut(s) 26, 137
EclXI CGGCCG 1 cut(s) 58
Eco130I CCWWGG 3 cut(s) 258, 273, 384
Eco31I GGTCTC 1 cut(s) 243
Eco52I CGGCCG 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 3 cut(s) 258, 273, 384
ErhI CCWWGG 3 cut(s) 258, 273, 384
FaiI YATR 2 cut(s) 113, 173
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 341, 418
FokI GGATG 2 cut(s) 69, 113
Fsp4HI GCNGC 2 cut(s) 341, 418
GlaI GCGC 2 cut(s) 49, 421
GluI GCNGC 2 cut(s) 341, 418
HaeII RGCGCY 2 cut(s) 51, 423
HaeIII GGCC 5 cut(s) 39, 60, 257, 269, 371
HapII CCGG 7 cut(s) 25, 51, 87, 105, 149, 344, 414
HhaI GCGC 2 cut(s) 50, 422
Hin1I GRCGYC 1 cut(s) 297
Hin6I GCGC 2 cut(s) 48, 420
HinP1I GCGC 2 cut(s) 48, 420
HincII GTYRAC 2 cut(s) 220, 226
HindII GTYRAC 2 cut(s) 220, 226
HinfI GANTC 2 cut(s) 12, 322
HpaII CCGG 7 cut(s) 25, 51, 87, 105, 149, 344, 414
HphI GGTGA 2 cut(s) 137, 358
Hpy166II GTNNAC 3 cut(s) 220, 226, 349
Hpy188III TCNNGA 2 cut(s) 16, 319
Hpy8I GTNNAC 3 cut(s) 220, 226, 349
Hpy99I CGWCG 4 cut(s) 227, 299, 362, 365
HpyCH4IV ACGT 4 cut(s) 42, 222, 282, 297
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 66, 75, 79, 419
HpyF3I CTNAG 3 cut(s) 303, 393, 438
HpySE526I ACGT 4 cut(s) 42, 222, 282, 297
Hsp92I GRCGYC 1 cut(s) 297
HspAI GCGC 2 cut(s) 48, 420
KpnI GGTACC 1 cut(s) 248
KroI GCCGGC 1 cut(s) 413
KroNI GCCGGC 1 cut(s) 415
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 2 cut(s) 91, 135
MaeII ACGT 4 cut(s) 42, 222, 282, 297
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 6 cut(s) 31, 40, 43, 124, 409, 412
MhlI GDGCHC 3 cut(s) 57, 288, 432
MnlI CCTC 6 cut(s) 29, 83, 101, 140, 168, 247
MroNI GCCGGC 1 cut(s) 413
MseI TTAA 1 cut(s) 405
MspI CCGG 7 cut(s) 25, 51, 87, 105, 149, 344, 414
MspR9I CCNGG 5 cut(s) 52, 87, 149, 150, 251
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 5 cut(s) 45, 66, 75, 79, 419
NaeI GCCGGC 1 cut(s) 415
NciI CCSGG 4 cut(s) 52, 87, 149, 150
NdeII GATC 1 cut(s) 291
NgoMIV GCCGGC 1 cut(s) 413
NlaIV GGNNCC 1 cut(s) 246
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 12, 322
PfoI TCCNGGA 1 cut(s) 85
PkrI GCNGC 2 cut(s) 342, 419
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 246
RsaI GTAC 2 cut(s) 179, 246
RsaNI GTAC 2 cut(s) 178, 245
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 2 cut(s) 341, 418
Sau3AI GATC 1 cut(s) 291
ScrFI CCNGG 5 cut(s) 52, 87, 149, 150, 251
SduI GDGCHC 3 cut(s) 57, 288, 432
SfaNI GCATC 2 cut(s) 91, 135
SmaI CCCGGG 1 cut(s) 150
SsiI CCGC 5 cut(s) 76, 96, 124, 193, 417
StyD4I CCNGG 5 cut(s) 50, 85, 147, 148, 249
StyI CCWWGG 3 cut(s) 258, 273, 384
TaiI ACGT 4 cut(s) 45, 225, 285, 300
TaqI TCGA 3 cut(s) 135, 225, 294
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 2 cut(s) 12, 322
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 298
TspGWI ACGGA 1 cut(s) 324
TspMI CCCGGG 1 cut(s) 148
TspRI CASTG 1 cut(s) 439
XmaI CCCGGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 225
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.