FvH4_4g12340

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002131
Physical Location & Seq
Reverse (-)
16032983 .. 16033423
441 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12340.t1

Sequence Viewer

Length: 441 bp
ATGACGACCCGATTCAAGAAGAACCGCAAGAAGAGAGGCCACGTGAGCGCCGGTCACGGTCGTATCGGCAAGCACCGCAAGCATCCCGGAGGTCGCGGAAACGCCGGAGGCATGCACCACCACCGCATCCTGTTCGACAAGTACCACCCGGGGTATTTCGGTAAAGTCGGTATGAGGTACTTCCACAAGCTCCGCAACAAGTTCTACTGCCCCATCGTCAACGTCGACAAGCTCTGGTCACTCGTCCCCCAGGAGGCCAAGGACAAGGCCACCAAGGACAACGTCCCCTTGATCGACGTCACTCAGCATGGATACTTCAAGATCCTCGGCAAGGGCAAGCTCCCGGCGGGCCACCCCGTCGTCGTCAAGGCCAAGCTCATCTCCAAGGTCGCTGAGAAGAAGATTAAGGAAGCCGGTGGCGCTGTCGTTCTCACCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015934 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022625 GO:0022626 GO:0030684 GO:0030687 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 ko04340 map03010 map04340
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

147

Amino Acids

16.34

Weight (kDa)

10.54

Isoelectric Point (pI)

20.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L27A PF00828 72 - 143 3.8e-16 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 96
AciI CCGC 7 cut(s) 25, 76, 96, 124, 193, 347, 435
AclWI GGATC 1 cut(s) 316
AcvI CACGTG 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 143, 179
AfiI CCNNNNNNNGG 2 cut(s) 253, 331
AgsI TTSAA 2 cut(s) 16, 319
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 4 cut(s) 190, 232, 340, 376
AluI AGCT 4 cut(s) 190, 232, 340, 376
AlwI GGATC 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 5 cut(s) 37, 255, 267, 349, 369
AspLEI GCGC 2 cut(s) 50, 422
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 4 cut(s) 87, 149, 150, 344
AsuHPI GGTGA 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 148
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BbrPI CACGTG 1 cut(s) 43
BccI CCATC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 251
BciVI GTATCC 1 cut(s) 305
BcnI CCSGG 4 cut(s) 87, 149, 150, 344
BfoI RGCGCY 2 cut(s) 51, 423
BfuI GTATCC 1 cut(s) 305
Bme1390I CCNGG 5 cut(s) 87, 149, 150, 251, 344
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 349
BmrFI CCNGG 5 cut(s) 87, 149, 150, 251, 344
BmsI GCATC 2 cut(s) 91, 135
BpuMI CCSGG 4 cut(s) 87, 149, 150, 344
BsaAI YACGTR 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 7 cut(s) 148, 149, 249, 258, 273, 325, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 331
Bse118I RCCGGY 2 cut(s) 50, 413
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 7 cut(s) 148, 149, 249, 258, 273, 325, 384
BseGI GGATG 2 cut(s) 82, 126
BseLI CCNNNNNNNGG 2 cut(s) 253, 331
BseMII CTCAG 2 cut(s) 317, 384
Bsh1236I CGCG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 5 cut(s) 39, 257, 269, 351, 371
BsiEI CGRYCG 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 6 cut(s) 51, 87, 105, 149, 344, 414
BslFI GGGAC 2 cut(s) 230, 269
BslI CCNNNNNNNGG 2 cut(s) 253, 331
BsmFI GGGAC 2 cut(s) 230, 269
BsnI GGCC 5 cut(s) 39, 257, 269, 351, 371
BsoBI CYCGRG 1 cut(s) 148
Bsp143I GATC 2 cut(s) 291, 321
BspACI CCGC 7 cut(s) 25, 76, 96, 124, 193, 347, 435
BspANI GGCC 5 cut(s) 39, 257, 269, 351, 371
BspCNI CTCAG 2 cut(s) 316, 385
BspFNI CGCG 1 cut(s) 96
BspPI GGATC 1 cut(s) 316
BsrFI RCCGGY 2 cut(s) 50, 413
BssAI RCCGGY 2 cut(s) 50, 413
BssECI CCNNGG 7 cut(s) 148, 149, 249, 258, 273, 325, 384
BssMI GATC 2 cut(s) 291, 321
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 3 cut(s) 258, 273, 384
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 43
BstC8I GCNNGC 5 cut(s) 71, 80, 113, 338, 349
BstDEI CTNAG 3 cut(s) 303, 393, 438
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 82, 126
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 2 cut(s) 51, 423
BstHHI GCGC 2 cut(s) 50, 422
BstKTI GATC 2 cut(s) 294, 324
BstMBI GATC 2 cut(s) 291, 321
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 4 cut(s) 45, 75, 79, 419
BstNI CCWGG 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 5 cut(s) 85, 147, 148, 249, 342
BstUI CGCG 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 5 cut(s) 39, 257, 269, 351, 371
BtsCI GGATG 2 cut(s) 82, 126
Cac8I GCNNGC 5 cut(s) 71, 80, 113, 338, 349
CfoI GCGC 2 cut(s) 50, 422
Cfr10I RCCGGY 2 cut(s) 50, 413
Cfr13I GGNCC 1 cut(s) 349
Cfr9I CCCGGG 1 cut(s) 148
Csp6I GTAC 2 cut(s) 142, 178
CviAII CATG 2 cut(s) 112, 308
CviQI GTAC 2 cut(s) 142, 178
DdeI CTNAG 3 cut(s) 303, 393, 438
DpnI GATC 2 cut(s) 293, 323
DpnII GATC 2 cut(s) 291, 321
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco130I CCWWGG 3 cut(s) 258, 273, 384
Eco72I CACGTG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 3 cut(s) 258, 273, 384
ErhI CCWWGG 3 cut(s) 258, 273, 384
FaeI CATG 2 cut(s) 115, 311
FaiI YATR 3 cut(s) 113, 173, 309
FaqI GGGAC 2 cut(s) 230, 269
FatI CATG 2 cut(s) 111, 307
FauI CCCGC 1 cut(s) 340
FblI GTMKAC 1 cut(s) 225
FokI GGATG 2 cut(s) 69, 113
GlaI GCGC 2 cut(s) 49, 421
HaeII RGCGCY 2 cut(s) 51, 423
HaeIII GGCC 5 cut(s) 39, 257, 269, 351, 371
HapII CCGG 6 cut(s) 51, 87, 105, 149, 344, 414
HhaI GCGC 2 cut(s) 50, 422
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 2 cut(s) 115, 311
Hin6I GCGC 2 cut(s) 48, 420
HinP1I GCGC 2 cut(s) 48, 420
HincII GTYRAC 2 cut(s) 220, 226
HindII GTYRAC 2 cut(s) 220, 226
HinfI GANTC 1 cut(s) 12
HpaII CCGG 6 cut(s) 51, 87, 105, 149, 344, 414
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 220, 226
Hpy188III TCNNGA 2 cut(s) 16, 319
Hpy8I GTNNAC 2 cut(s) 220, 226
Hpy99I CGWCG 4 cut(s) 227, 299, 362, 365
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 4 cut(s) 42, 222, 282, 297
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 75, 79, 419
HpyF3I CTNAG 3 cut(s) 303, 393, 438
HpySE526I ACGT 4 cut(s) 42, 222, 282, 297
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 115, 311
HspAI GCGC 2 cut(s) 48, 420
Kzo9I GATC 2 cut(s) 291, 321
LmnI GCTCC 2 cut(s) 195, 345
LweI GCATC 2 cut(s) 91, 135
MaeII ACGT 4 cut(s) 42, 222, 282, 297
MaeIII GTNAC 3 cut(s) 53, 237, 298
MalI GATC 2 cut(s) 293, 323
MboI GATC 2 cut(s) 291, 321
MboII GAAGA 4 cut(s) 31, 43, 409, 412
MflI RGATCY 1 cut(s) 321
MnlI CCTC 6 cut(s) 29, 83, 101, 168, 247, 335
MseI TTAA 1 cut(s) 405
MspI CCGG 6 cut(s) 51, 87, 105, 149, 344, 414
MspR9I CCNGG 5 cut(s) 87, 149, 150, 251, 344
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 45, 75, 79, 419
NciI CCSGG 4 cut(s) 87, 149, 150, 344
NdeII GATC 2 cut(s) 291, 321
NlaIII CATG 2 cut(s) 115, 311
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 3 cut(s) 53, 237, 298
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 12
PflFI GACNNNGTC 1 cut(s) 281
PfoI TCCNGGA 1 cut(s) 85
PmaCI CACGTG 1 cut(s) 43
PmlI CACGTG 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 249
PspCI CACGTG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 249
PspPI GGNCC 1 cut(s) 349
PsuI RGATCY 1 cut(s) 321
PsyI GACNNNGTC 1 cut(s) 281
RsaI GTAC 2 cut(s) 143, 179
RsaNI GTAC 2 cut(s) 142, 178
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 405
Sau3AI GATC 2 cut(s) 291, 321
Sau96I GGNCC 1 cut(s) 349
ScrFI CCNGG 5 cut(s) 87, 149, 150, 251, 344
SfaNI GCATC 2 cut(s) 91, 135
SmaI CCCGGG 1 cut(s) 150
SphI GCATGC 1 cut(s) 115
SsiI CCGC 7 cut(s) 25, 76, 96, 124, 193, 347, 435
StyD4I CCNGG 5 cut(s) 85, 147, 148, 249, 342
StyI CCWWGG 3 cut(s) 258, 273, 384
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 4 cut(s) 45, 225, 285, 300
TaqI TCGA 3 cut(s) 135, 225, 294
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseFI GTSAC 3 cut(s) 53, 237, 298
Tsp45I GTSAC 3 cut(s) 53, 237, 298
TspMI CCCGGG 1 cut(s) 148
Tth111I GACNNNGTC 1 cut(s) 281
XagI CCTNNNNNAGG 1 cut(s) 329
XceI RCATGY 1 cut(s) 115
XmaI CCCGGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 225
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.