Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002131

Physical Location & Seq

Genomic Coordinates Forward (+)

13690243 .. 13692023

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACGACCCGGTTGAAGAAAAACCGAAAGAAGAGAGGCCACGTCAGCGCCGGTCACGGCCGGATCGGGAAGCACCGGAAGCACCCCGGCGGGCGGGGAAACGCCGGAGGGATGCACCACCACCGGATCCTGTTCGACAAGTACCACCCGGGGTATTTCGGTAAAGTTGGCATGAGGTACTTCCACAAGCTCCGCAACAAGTTCCACTGCCCCATCGTCAACGTCGACAAGCTCTGGTCACTGGTGCCGCAGGAGGTCAAGGACAAGGCCACCAAAAACGACGTGCCGTTGATTGACGTGACGCAGCACGGGTTCTTCAAGATTTTGGGCAAGGGGAAGCTGCCGGCTGACCGGCCCGTGGTGGTGAAGGCCAAGCTCATTTCGAAGGTCGCCGAGAAGAAGATCAAGGAGGCCGGCGGCGCTGTGGTTCTCACCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

146

Amino Acids

16.36

Weight (kDa)

10.69

Isoelectric Point (pI)

19.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	72 - 143	5.5e-16	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23290 AT1G70600
fragaria_vesca	FvH4_3g11450 FvH4_4g12340 FvH4_4g25520
malus_domestica	MD09G1026900.v1.1 MD13G1102000.v1.1 MD16G1102500.v1.1
prunus_persica	Prupe.1G243800_v2.0.a1 Prupe.3G291800_v2.0.a1 Prupe.4G102400_v2.0.a1
pyrus_communis	pycom111g02100 pycom13g08910 pycom17g02200
rosa_chinensis	RchiOBHm_Chr2g0172781 RchiOBHm_Chr4g0432911 RchiOBHm_Chr5g0018391
rosa_laevigata	RLG00000006803 RLG00000022138 RLG00000032359
rosa_multiflora	Rmu_sc0004464.1_g000011 Rmu_sc0004464.1_g000012 Rmu_sc0005847.1_g000003 Rmu_sc0010744.1_g000002 Rmu_sc0017459.1_g000008
rosa_roxburghii	Rroxscaffold_1G00043230 Rroxscaffold_5G00374310
rosa_rugosa	Rorug02G0561600 Rorug04G0263700
rosa_samantha	Rh2AG638700 Rh2BG652200 Rh2CG618500 Rh2DG666400 Rh4AG317800 Rh4BG326000 Rh4CG341100 Rh4DG321100 Rh5AG135500 Rh5BG134100 Rh5CG145800 Rh5DG135400
rosa_wichuraiana	Rw2G052770 Rw4G027630 Rw5G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	6 cut(s)	90, 94, 193, 248, 417, 435
AclWI	GGATC	3 cut(s)	71, 121, 134
AcoI	YGGCCR	1 cut(s)	58
AfaI	GTAC	2 cut(s)	143, 179
AfiI	CCNNNNNNNGG	2 cut(s)	93, 358
AgsI	TTSAA	2 cut(s)	16, 319
AjiI	CACGTC	3 cut(s)	43, 283, 298
AluBI	AGCT	4 cut(s)	190, 232, 340, 376
AluI	AGCT	4 cut(s)	190, 232, 340, 376
AlwI	GGATC	3 cut(s)	71, 121, 134
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	6 cut(s)	37, 58, 267, 353, 369, 411
ApeKI	GCWGC	2 cut(s)	304, 340
AspLEI	GCGC	2 cut(s)	50, 422
AspS9I	GGNCC	1 cut(s)	354
AsuC2I	CCSGG	4 cut(s)	10, 87, 149, 150
AsuHPI	GGTGA	2 cut(s)	376, 424
AsuII	TTCGAA	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	148
BamHI	GGATCC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	316, 327
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	73, 271
BcnI	CCSGG	4 cut(s)	10, 87, 149, 150
BfaI	CTAG	1 cut(s)	439
BfoI	RGCGCY	2 cut(s)	51, 423
BisI	GCNGC	4 cut(s)	248, 305, 341, 418
BlsI	GCNGC	4 cut(s)	249, 306, 342, 419
Bme1390I	CCNGG	4 cut(s)	10, 87, 149, 150
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	3 cut(s)	43, 283, 298
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	2 cut(s)	128, 246
BmrFI	CCNGG	4 cut(s)	10, 87, 149, 150
BmsI	GCATC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	383
BpuMI	CCSGG	4 cut(s)	10, 87, 149, 150
BsaJI	CCNNGG	4 cut(s)	85, 148, 149, 357
BsaWI	WCCGGW	2 cut(s)	75, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 358
Bse118I	RCCGGY	4 cut(s)	50, 343, 351, 413
Bse1I	ACTGG	1 cut(s)	246
BseDI	CCNNGG	4 cut(s)	85, 148, 149, 357
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	93, 358
BseNI	ACTGG	1 cut(s)	246
BseX3I	CGGCCG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	316, 327
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	6 cut(s)	39, 60, 269, 355, 371, 413
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	93, 358
BsnI	GGCC	6 cut(s)	39, 60, 269, 355, 371, 413
BsoBI	CYCGRG	1 cut(s)	148
Bsp119I	TTCGAA	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	63, 126, 402
BspACI	CCGC	6 cut(s)	90, 94, 193, 248, 417, 435
BspANI	GGCC	6 cut(s)	39, 60, 269, 355, 371, 413
BspLI	GGNNCC	2 cut(s)	128, 246
BspPI	GGATC	3 cut(s)	71, 121, 134
BspT104I	TTCGAA	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	244
BsrFI	RCCGGY	4 cut(s)	50, 343, 351, 413
BsrI	ACTGG	1 cut(s)	246
BssAI	RCCGGY	4 cut(s)	50, 343, 351, 413
BssECI	CCNNGG	4 cut(s)	85, 148, 149, 357
BssMI	GATC	3 cut(s)	63, 126, 402
Bst6I	CTCTTC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	92, 345, 415
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	117
BstH2I	RGCGCY	2 cut(s)	51, 423
BstHHI	GCGC	2 cut(s)	50, 422
BstKTI	GATC	3 cut(s)	66, 129, 405
BstMBI	GATC	3 cut(s)	63, 126, 402
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 79, 419
BstSCI	CCNGG	4 cut(s)	8, 85, 147, 148
BstV1I	GCAGC	2 cut(s)	316, 327
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	6 cut(s)	39, 60, 269, 355, 371, 413
BtgI	CCRYGG	1 cut(s)	357
BtrI	CACGTC	3 cut(s)	43, 283, 298
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 239
Cac8I	GCNNGC	3 cut(s)	92, 345, 415
CfoI	GCGC	2 cut(s)	50, 422
Cfr10I	RCCGGY	4 cut(s)	50, 343, 351, 413
Cfr13I	GGNCC	1 cut(s)	354
Cfr9I	CCCGGG	1 cut(s)	148
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	142, 178
CviAII	CATG	1 cut(s)	172
CviQI	GTAC	2 cut(s)	142, 178
DpnI	GATC	3 cut(s)	65, 128, 404
DpnII	GATC	3 cut(s)	63, 126, 402
EaeI	YGGCCR	1 cut(s)	58
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EclXI	CGGCCG	1 cut(s)	58
Eco52I	CGGCCG	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	148
FaeI	CATG	1 cut(s)	175
FaiI	YATR	1 cut(s)	173
FatI	CATG	1 cut(s)	171
FauI	CCCGC	2 cut(s)	83, 87
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	248, 305, 341, 418
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	4 cut(s)	248, 305, 341, 418
FspBI	CTAG	1 cut(s)	439
GlaI	GCGC	2 cut(s)	49, 421
GluI	GCNGC	4 cut(s)	248, 305, 341, 418
HaeII	RGCGCY	2 cut(s)	51, 423
HaeIII	GGCC	6 cut(s)	39, 60, 269, 355, 371, 413
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	2 cut(s)	50, 422
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	2 cut(s)	48, 420
HinP1I	GCGC	2 cut(s)	48, 420
HincII	GTYRAC	2 cut(s)	220, 226
HindII	GTYRAC	2 cut(s)	220, 226
HphI	GGTGA	2 cut(s)	376, 424
Hpy166II	GTNNAC	2 cut(s)	220, 226
Hpy188III	TCNNGA	2 cut(s)	67, 319
Hpy8I	GTNNAC	2 cut(s)	220, 226
Hpy99I	CGWCG	2 cut(s)	227, 284
HpyAV	CCTTC	2 cut(s)	361, 379
HpyCH4IV	ACGT	4 cut(s)	42, 222, 282, 297
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 79, 419
HpySE526I	ACGT	4 cut(s)	42, 222, 282, 297
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	2 cut(s)	48, 420
KroI	GCCGGC	2 cut(s)	343, 413
KroNI	GCCGGC	2 cut(s)	345, 415
Kzo9I	GATC	3 cut(s)	63, 126, 402
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	2 cut(s)	316, 327
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	439
MaeII	ACGT	4 cut(s)	42, 222, 282, 297
MaeIII	GTNAC	3 cut(s)	53, 237, 298
MalI	GATC	3 cut(s)	65, 128, 404
MboI	GATC	3 cut(s)	63, 126, 402
MboII	GAAGA	5 cut(s)	28, 43, 307, 409, 412
MflI	RGATCY	1 cut(s)	126
MnlI	CCTC	5 cut(s)	29, 101, 168, 247, 403
MroNI	GCCGGC	2 cut(s)	343, 413
MspR9I	CCNGG	4 cut(s)	10, 87, 149, 150
MwoI	GCNNNNNNNGC	3 cut(s)	45, 79, 419
NaeI	GCCGGC	2 cut(s)	345, 415
NciI	CCSGG	4 cut(s)	10, 87, 149, 150
NdeII	GATC	3 cut(s)	63, 126, 402
NgoMIV	GCCGGC	2 cut(s)	343, 413
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	128, 246
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	3 cut(s)	53, 237, 298
NspV	TTCGAA	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	2 cut(s)	345, 415
PkrI	GCNGC	4 cut(s)	249, 306, 342, 419
PspN4I	GGNNCC	2 cut(s)	128, 246
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	2 cut(s)	143, 179
RsaNI	GTAC	2 cut(s)	142, 178
SalI	GTCGAC	1 cut(s)	224
SatI	GCNGC	4 cut(s)	248, 305, 341, 418
Sau3AI	GATC	3 cut(s)	63, 126, 402
Sau96I	GGNCC	1 cut(s)	354
ScrFI	CCNGG	4 cut(s)	10, 87, 149, 150
SfaNI	GCATC	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	383
SmaI	CCCGGG	1 cut(s)	150
SsiI	CCGC	6 cut(s)	90, 94, 193, 248, 417, 435
SspMI	CTAG	1 cut(s)	439
StyD4I	CCNGG	4 cut(s)	8, 85, 147, 148
TaiI	ACGT	4 cut(s)	45, 225, 285, 300
TaqI	TCGA	3 cut(s)	135, 225, 383
TauI	GCSGC	2 cut(s)	250, 420
TscAI	CASTG	2 cut(s)	212, 246
TseFI	GTSAC	3 cut(s)	53, 237, 298
TseI	GCWGC	2 cut(s)	304, 340
Tsp45I	GTSAC	3 cut(s)	53, 237, 298
TspMI	CCCGGG	1 cut(s)	148
TspRI	CASTG	2 cut(s)	212, 246
XmaI	CCCGGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.