Prupe.1G243800_v2.0.a1

Belongs to the universal ribosomal protein uL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0002131
Physical Location & Seq
Reverse (-)
25745710 .. 25746772
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G243800.1

Sequence Viewer

Length: 441 bp
ATGACGACCCGATTCAAGAAGAACCGCAAGAAGAGAGGCCACGTCAGCGCCGGGCATGGTCGTATCGGCAAGCACCGCAAGCATCCTGGAGGTCGCGGTAACGCCGGAGGCATGCACCACCACCGCATCCTCTTCGACAAGTACCATCCGGGGTATTTTGGTAAAGTTGGTATGCGCTACTTCCACAAGCTCCGCAACAAGTTCTACTGCCCCATCGTCAACGTCGACAAGCTCTGGTCTCTCCTCCCCCAGGAGGCCAAGGATAAGGCCACCAAGGACAGCGCGCCGTTGATCGACGTCACCCAGTACGGCTTCTTCAAGGTCTTGGGAAAGGGCGCTTTGCCGCAGAACCAGCCCGTTGTGGTCAAGGCCAAGCTCATCTCCAAGACAGCTGAGAAGAAGATCAAGGAAGCTGGTGGTGCTGTTGTGCTCACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

147

Amino Acids

16.34

Weight (kDa)

10.52

Isoelectric Point (pI)

22.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 225
AccII CGCG 2 cut(s) 96, 284
AciI CCGC 6 cut(s) 25, 76, 96, 124, 193, 344
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 143, 308
AfiI CCNNNNNNNGG 2 cut(s) 250, 253
AgsI TTSAA 2 cut(s) 16, 319
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 2 cut(s) 85, 249
AluBI AGCT 6 cut(s) 190, 232, 376, 392, 413, 437
AluI AGCT 6 cut(s) 190, 232, 376, 392, 413, 437
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 243
AoxI GGCC 4 cut(s) 37, 255, 267, 369
AspLEI GCGC 5 cut(s) 50, 177, 284, 286, 338
AsuC2I CCSGG 2 cut(s) 52, 150
AsuHPI GGTGA 1 cut(s) 292
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
Bbv12I GWGCWC 1 cut(s) 432
BccI CCATC 2 cut(s) 153, 221
BceAI ACGGC 2 cut(s) 271, 325
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 87, 251
BcnI CCSGG 2 cut(s) 52, 150
BcoDI GTCTC 1 cut(s) 243
BfoI RGCGCY 2 cut(s) 51, 339
BisI GCNGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 345
Bme1390I CCNGG 4 cut(s) 52, 87, 150, 251
BmgBI CACGTC 1 cut(s) 43
BmrFI CCNGG 4 cut(s) 52, 87, 150, 251
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 2 cut(s) 91, 135
BmuI ACTGGG 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 108
BpuMI CCSGG 2 cut(s) 52, 150
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 4 cut(s) 149, 249, 258, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 253
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 2 cut(s) 87, 251
BseDI CCNNGG 4 cut(s) 149, 249, 258, 273
BseGI GGATG 3 cut(s) 82, 126, 145
BseLI CCNNNNNNNGG 2 cut(s) 250, 253
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 304
BsePI GCGCGC 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 233
Bsh1236I CGCG 2 cut(s) 96, 284
BshFI GGCC 4 cut(s) 39, 257, 269, 371
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 3 cut(s) 51, 105, 149
BslI CCNNNNNNNGG 2 cut(s) 250, 253
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 4 cut(s) 39, 257, 269, 371
Bso31I GGTCTC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 2 cut(s) 291, 402
BspACI CCGC 6 cut(s) 25, 76, 96, 124, 193, 344
BspANI GGCC 4 cut(s) 39, 257, 269, 371
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 2 cut(s) 96, 284
BspTNI GGTCTC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 149, 249, 258, 273
BssHII GCGCGC 1 cut(s) 282
BssMI GATC 2 cut(s) 291, 402
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 258, 273
Bst2UI CCWGG 2 cut(s) 87, 251
Bst6I CTCTTC 2 cut(s) 26, 137
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 4 cut(s) 71, 80, 113, 284
BstDEI CTNAG 2 cut(s) 393, 438
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 3 cut(s) 82, 126, 145
BstFNI CGCG 2 cut(s) 96, 284
BstH2I RGCGCY 2 cut(s) 51, 339
BstHHI GCGC 5 cut(s) 50, 177, 284, 286, 338
BstKTI GATC 2 cut(s) 294, 405
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 2 cut(s) 291, 402
BstMWI GCNNNNNNNGC 5 cut(s) 45, 75, 79, 352, 419
BstNI CCWGG 2 cut(s) 87, 251
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 4 cut(s) 50, 85, 148, 249
BstUI CGCG 2 cut(s) 96, 284
BsuRI GGCC 4 cut(s) 39, 257, 269, 371
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 3 cut(s) 82, 126, 145
Cac8I GCNNGC 4 cut(s) 71, 80, 113, 284
CfoI GCGC 5 cut(s) 50, 177, 284, 286, 338
Csp6I GTAC 2 cut(s) 142, 307
CviAII CATG 2 cut(s) 56, 112
CviQI GTAC 2 cut(s) 142, 307
DdeI CTNAG 2 cut(s) 393, 438
DpnI GATC 2 cut(s) 293, 404
DpnII GATC 2 cut(s) 291, 402
Eam1104I CTCTTC 2 cut(s) 26, 137
EarI CTCTTC 2 cut(s) 26, 137
Eco130I CCWWGG 2 cut(s) 258, 273
Eco31I GGTCTC 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 85, 249
EcoT14I CCWWGG 2 cut(s) 258, 273
ErhI CCWWGG 2 cut(s) 258, 273
FaeI CATG 2 cut(s) 59, 115
FaiI YATR 3 cut(s) 57, 113, 173
FatI CATG 2 cut(s) 55, 111
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 344
FokI GGATG 3 cut(s) 69, 113, 132
Fsp4HI GCNGC 1 cut(s) 344
GlaI GCGC 5 cut(s) 49, 176, 283, 285, 337
GluI GCNGC 1 cut(s) 344
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 2 cut(s) 51, 339
HaeIII GGCC 4 cut(s) 39, 257, 269, 371
HapII CCGG 3 cut(s) 51, 105, 149
HhaI GCGC 5 cut(s) 50, 177, 284, 286, 338
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 2 cut(s) 59, 115
Hin6I GCGC 5 cut(s) 48, 175, 282, 284, 336
HinP1I GCGC 5 cut(s) 48, 175, 282, 284, 336
HincII GTYRAC 2 cut(s) 220, 226
HindII GTYRAC 2 cut(s) 220, 226
HinfI GANTC 1 cut(s) 12
HpaII CCGG 3 cut(s) 51, 105, 149
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 220, 226
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 2 cut(s) 220, 226
Hpy99I CGWCG 2 cut(s) 227, 299
HpyCH4IV ACGT 3 cut(s) 42, 222, 297
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 75, 79, 352, 419
HpyF3I CTNAG 2 cut(s) 393, 438
HpySE526I ACGT 3 cut(s) 42, 222, 297
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 59, 115
HspAI GCGC 5 cut(s) 48, 175, 282, 284, 336
Kzo9I GATC 2 cut(s) 291, 402
LmnI GCTCC 1 cut(s) 195
LweI GCATC 2 cut(s) 91, 135
MaeII ACGT 3 cut(s) 42, 222, 297
MaeIII GTNAC 2 cut(s) 98, 298
MalI GATC 2 cut(s) 293, 404
MboI GATC 2 cut(s) 291, 402
MboII GAAGA 6 cut(s) 31, 43, 124, 307, 409, 412
MhlI GDGCHC 1 cut(s) 432
MnlI CCTC 6 cut(s) 29, 83, 101, 140, 247, 254
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 3 cut(s) 51, 105, 149
MspR9I CCNGG 4 cut(s) 52, 87, 150, 251
MvaI CCWGG 2 cut(s) 87, 251
MvnI CGCG 2 cut(s) 96, 284
MwoI GCNNNNNNNGC 5 cut(s) 45, 75, 79, 352, 419
NciI CCSGG 2 cut(s) 52, 150
NdeII GATC 2 cut(s) 291, 402
NlaIII CATG 2 cut(s) 59, 115
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
PauI GCGCGC 1 cut(s) 282
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 12
PfoI TCCNGGA 1 cut(s) 85
PkrI GCNGC 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 85, 249
PspGI CCWGG 2 cut(s) 85, 249
PteI GCGCGC 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 2 cut(s) 143, 308
RsaNI GTAC 2 cut(s) 142, 307
SalI GTCGAC 1 cut(s) 224
SatI GCNGC 1 cut(s) 344
Sau3AI GATC 2 cut(s) 291, 402
ScrFI CCNGG 4 cut(s) 52, 87, 150, 251
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 2 cut(s) 91, 135
SphI GCATGC 1 cut(s) 115
SsiI CCGC 6 cut(s) 25, 76, 96, 124, 193, 344
StyD4I CCNGG 4 cut(s) 50, 85, 148, 249
StyI CCWWGG 2 cut(s) 258, 273
TaiI ACGT 3 cut(s) 45, 225, 300
TaqI TCGA 3 cut(s) 135, 225, 294
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 1 cut(s) 12
TseFI GTSAC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 298
XagI CCTNNNNNAGG 1 cut(s) 248
XceI RCATGY 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 225
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.