Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005847.1

Orthogroup ID

OG0002131

Physical Location & Seq

Genomic Coordinates Reverse (-)

11631 .. 12071

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005847.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgacgacccgattcaagaagaaccggaagaagagaggccacgtcagcgccgggcacggccgtatcggcaagcaccgcaagcatcccggaggtcgcggaaacgccggaggcatgcaccaccaccgcatcctcttcgataagtatcacccggggtatttcggtaaagtcggtatgaggtacttccacaagctccgcaacaagttctactgccccatcgtcaacgtcgacaagctctggtctctggtaccccaggaggccaaggacaaggccaccaaggacaacgtgcccttgatcgacgtcactcagcacggctacttcaagattctcggcaaggggaagctgccggtgaaccagcccgtcgttgtcaaggccaagctcatctccaaggtcgctgagaagaagattaaggaagccggcggcgctgtggtgctcaccgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015934 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022625 GO:0022626 GO:0030684 GO:0030687 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 ko04340 map03010 map04340

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

146

Amino Acids

16.41

Weight (kDa)

10.54

Isoelectric Point (pI)

21.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23290 AT1G70600
fragaria_vesca	FvH4_3g11450 FvH4_4g12340 FvH4_4g25520
malus_domestica	MD09G1026900.v1.1 MD13G1102000.v1.1 MD16G1102500.v1.1
prunus_persica	Prupe.1G243800_v2.0.a1 Prupe.3G291800_v2.0.a1 Prupe.4G102400_v2.0.a1
pyrus_communis	pycom111g02100 pycom13g08910 pycom17g02200
rosa_chinensis	RchiOBHm_Chr2g0172781 RchiOBHm_Chr4g0432911 RchiOBHm_Chr5g0018391
rosa_laevigata	RLG00000006803 RLG00000022138 RLG00000032359
rosa_multiflora	Rmu_sc0004464.1_g000011 Rmu_sc0004464.1_g000012 Rmu_sc0005847.1_g000003 Rmu_sc0010744.1_g000002 Rmu_sc0017459.1_g000008
rosa_roxburghii	Rroxscaffold_1G00043230 Rroxscaffold_5G00374310
rosa_rugosa	Rorug02G0561600 Rorug04G0263700
rosa_samantha	Rh2AG638700 Rh2BG652200 Rh2CG618500 Rh2DG666400 Rh4AG317800 Rh4BG326000 Rh4CG341100 Rh4DG321100 Rh5AG135500 Rh5BG134100 Rh5CG145800 Rh5DG135400
rosa_wichuraiana	Rw2G052770 Rw4G027630 Rw5G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	300
Acc65I	GGTACC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	96
AciI	CCGC	6 cut(s)	76, 96, 124, 193, 417, 435
AcoI	YGGCCR	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	2 cut(s)	179, 246
AgsI	TTSAA	2 cut(s)	16, 319
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	4 cut(s)	190, 232, 340, 376
AluI	AGCT	4 cut(s)	190, 232, 340, 376
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	5 cut(s)	37, 58, 255, 267, 369
ApeKI	GCWGC	1 cut(s)	340
Asp718I	GGTACC	1 cut(s)	244
AspLEI	GCGC	2 cut(s)	50, 422
AsuC2I	CCSGG	4 cut(s)	52, 87, 149, 150
AsuHPI	GGTGA	3 cut(s)	137, 358, 424
AvaI	CYCGRG	1 cut(s)	148
BaeGI	GKGCMC	2 cut(s)	57, 288
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BanI	GGYRCC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	3 cut(s)	45, 73, 325
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	4 cut(s)	52, 87, 149, 150
BcoDI	GTCTC	1 cut(s)	243
BfoI	RGCGCY	2 cut(s)	51, 423
BglI	GCCNNNNNGGC	1 cut(s)	66
BisI	GCNGC	2 cut(s)	341, 418
BlsI	GCNGC	2 cut(s)	342, 419
Bme1390I	CCNGG	5 cut(s)	52, 87, 149, 150, 251
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	5 cut(s)	52, 87, 149, 150, 251
BmsI	GCATC	2 cut(s)	91, 135
BpuMI	CCSGG	4 cut(s)	52, 87, 149, 150
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	6 cut(s)	148, 149, 249, 258, 273, 384
BsaWI	WCCGGW	1 cut(s)	24
Bse118I	RCCGGY	2 cut(s)	343, 413
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	6 cut(s)	148, 149, 249, 258, 273, 384
BseGI	GGATG	2 cut(s)	82, 126
BseJI	GATNNNNATC	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	317, 384
BseSI	GKGCMC	2 cut(s)	57, 288
BseX3I	CGGCCG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	327
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	5 cut(s)	39, 60, 257, 269, 371
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	7 cut(s)	25, 51, 87, 105, 149, 344, 414
BsmAI	GTCTC	1 cut(s)	243
BsnI	GGCC	5 cut(s)	39, 60, 257, 269, 371
Bso31I	GGTCTC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	3 cut(s)	57, 288, 432
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	6 cut(s)	76, 96, 124, 193, 417, 435
BspANI	GGCC	5 cut(s)	39, 60, 257, 269, 371
BspCNI	CTCAG	2 cut(s)	316, 385
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	243
BsrFI	RCCGGY	2 cut(s)	343, 413
BssAI	RCCGGY	2 cut(s)	343, 413
BssECI	CCNNGG	6 cut(s)	148, 149, 249, 258, 273, 384
BssMI	GATC	1 cut(s)	291
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	3 cut(s)	258, 273, 384
Bst2UI	CCWGG	1 cut(s)	251
Bst6I	CTCTTC	2 cut(s)	26, 137
BstACI	GRCGYC	1 cut(s)	297
BstC8I	GCNNGC	4 cut(s)	71, 80, 113, 415
BstDEI	CTNAG	3 cut(s)	303, 393, 438
BstF5I	GGATG	2 cut(s)	82, 126
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	2 cut(s)	51, 423
BstHHI	GCGC	2 cut(s)	50, 422
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	291
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 66, 75, 79, 419
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	5 cut(s)	50, 85, 147, 148, 249
BstSLI	GKGCMC	2 cut(s)	57, 288
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	327
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	5 cut(s)	39, 60, 257, 269, 371
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	82, 126
Cac8I	GCNNGC	4 cut(s)	71, 80, 113, 415
CfoI	GCGC	2 cut(s)	50, 422
Cfr10I	RCCGGY	2 cut(s)	343, 413
Cfr9I	CCCGGG	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	178, 245
CviAII	CATG	1 cut(s)	112
CviQI	GTAC	2 cut(s)	178, 245
DdeI	CTNAG	3 cut(s)	303, 393, 438
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	58
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	2 cut(s)	26, 137
EarI	CTCTTC	2 cut(s)	26, 137
EclXI	CGGCCG	1 cut(s)	58
Eco130I	CCWWGG	3 cut(s)	258, 273, 384
Eco31I	GGTCTC	1 cut(s)	243
Eco52I	CGGCCG	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	3 cut(s)	258, 273, 384
ErhI	CCWWGG	3 cut(s)	258, 273, 384
FaeI	CATG	1 cut(s)	115
FaiI	YATR	2 cut(s)	113, 173
FatI	CATG	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	341, 418
FokI	GGATG	2 cut(s)	69, 113
Fsp4HI	GCNGC	2 cut(s)	341, 418
GlaI	GCGC	2 cut(s)	49, 421
GluI	GCNGC	2 cut(s)	341, 418
HaeII	RGCGCY	2 cut(s)	51, 423
HaeIII	GGCC	5 cut(s)	39, 60, 257, 269, 371
HapII	CCGG	7 cut(s)	25, 51, 87, 105, 149, 344, 414
HhaI	GCGC	2 cut(s)	50, 422
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	2 cut(s)	48, 420
HinP1I	GCGC	2 cut(s)	48, 420
HincII	GTYRAC	2 cut(s)	220, 226
HindII	GTYRAC	2 cut(s)	220, 226
HinfI	GANTC	2 cut(s)	12, 322
HpaII	CCGG	7 cut(s)	25, 51, 87, 105, 149, 344, 414
HphI	GGTGA	3 cut(s)	137, 358, 424
Hpy166II	GTNNAC	3 cut(s)	220, 226, 349
Hpy188III	TCNNGA	2 cut(s)	16, 319
Hpy8I	GTNNAC	3 cut(s)	220, 226, 349
Hpy99I	CGWCG	3 cut(s)	227, 299, 362
HpyCH4IV	ACGT	4 cut(s)	42, 222, 282, 297
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 66, 75, 79, 419
HpyF3I	CTNAG	3 cut(s)	303, 393, 438
HpySE526I	ACGT	4 cut(s)	42, 222, 282, 297
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	2 cut(s)	48, 420
KpnI	GGTACC	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	413
KroNI	GCCGGC	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	2 cut(s)	91, 135
MaeII	ACGT	4 cut(s)	42, 222, 282, 297
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	6 cut(s)	31, 40, 43, 124, 409, 412
MhlI	GDGCHC	3 cut(s)	57, 288, 432
MnlI	CCTC	6 cut(s)	29, 83, 101, 140, 168, 247
MroNI	GCCGGC	1 cut(s)	413
MseI	TTAA	1 cut(s)	405
MspI	CCGG	7 cut(s)	25, 51, 87, 105, 149, 344, 414
MspR9I	CCNGG	5 cut(s)	52, 87, 149, 150, 251
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	5 cut(s)	45, 66, 75, 79, 419
NaeI	GCCGGC	1 cut(s)	415
NciI	CCSGG	4 cut(s)	52, 87, 149, 150
NdeII	GATC	1 cut(s)	291
NgoMIV	GCCGGC	1 cut(s)	413
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	246
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	115
PaeI	GCATGC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	12, 322
PfoI	TCCNGGA	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	342, 419
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	246
RsaI	GTAC	2 cut(s)	179, 246
RsaNI	GTAC	2 cut(s)	178, 245
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	341, 418
Sau3AI	GATC	1 cut(s)	291
ScrFI	CCNGG	5 cut(s)	52, 87, 149, 150, 251
SduI	GDGCHC	3 cut(s)	57, 288, 432
SfaNI	GCATC	2 cut(s)	91, 135
SmaI	CCCGGG	1 cut(s)	150
SphI	GCATGC	1 cut(s)	115
SsiI	CCGC	6 cut(s)	76, 96, 124, 193, 417, 435
StyD4I	CCNGG	5 cut(s)	50, 85, 147, 148, 249
StyI	CCWWGG	3 cut(s)	258, 273, 384
TaiI	ACGT	4 cut(s)	45, 225, 285, 300
TaqI	TCGA	3 cut(s)	135, 225, 294
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	12, 322
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	298
TspMI	CCCGGG	1 cut(s)	148
XceI	RCATGY	1 cut(s)	115
XmaI	CCCGGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	225
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.