Rh4DG321100

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002131
Physical Location & Seq
Reverse (-)
54457320 .. 54458003
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG321100.1

Sequence Viewer

Length: 441 bp
ATGACGACCCGATTCAAGAAGAACCGGAAGAAGAGAGGCCACGTCAGCGCCGGGCACGGCCGTATCGGCAAGCACCGCAAGCATCCCGGAGGTCGCGGAAACGCCGGAGGCATGCACCACCACCGCATCCTCTTCGACAAGTATCACCCGGGGTATTTCGGTAAAGTCGGTATGAGGTACTTCCACAAGCTCCGCAACAAGTTCTACTGCCCCATCGTCAACGTCGACAAGCTCTGGTCCCTGGTACCCCAGGAGGCCAAGGACAAGGCCACCAAGGACAACGTGCCCTTGATCGACGTCACTCAGCACGGCTACTTCAAGATTCTCGGCAAGGGGAAGCTGCCGGTGAACCAGCCCGTCGTCGTCAAGGCCAAGCTCATCTCCAAGGTCGCTGAGAAGAAGATTAAGGAAGCCGGTGGCGCTGTGGTGCTCACCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015934 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022625 GO:0022626 GO:0030684 GO:0030687 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 ko04340 map03010 map04340
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

146

Amino Acids

16.41

Weight (kDa)

10.54

Isoelectric Point (pI)

21.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L27A PF00828 72 - 143 2.1e-16 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
Acc65I GGTACC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 96
AciI CCGC 5 cut(s) 76, 96, 124, 193, 435
AcoI YGGCCR 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 179, 246
AgsI TTSAA 2 cut(s) 16, 319
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 2 cut(s) 240, 249
AluBI AGCT 4 cut(s) 190, 232, 340, 376
AluI AGCT 4 cut(s) 190, 232, 340, 376
Alw21I GWGCWC 1 cut(s) 432
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 5 cut(s) 37, 58, 255, 267, 369
ApeKI GCWGC 1 cut(s) 340
Asp718I GGTACC 1 cut(s) 244
AspLEI GCGC 2 cut(s) 50, 422
AspS9I GGNCC 1 cut(s) 237
AsuC2I CCSGG 4 cut(s) 52, 87, 149, 150
AsuHPI GGTGA 3 cut(s) 137, 358, 424
AvaI CYCGRG 1 cut(s) 148
AvaII GGWCC 1 cut(s) 237
BaeGI GKGCMC 2 cut(s) 57, 288
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BanI GGYRCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 327
BccI CCATC 1 cut(s) 221
BceAI ACGGC 3 cut(s) 45, 73, 325
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 242, 251
BcnI CCSGG 4 cut(s) 52, 87, 149, 150
BfoI RGCGCY 2 cut(s) 51, 423
BglI GCCNNNNNGGC 1 cut(s) 66
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme1390I CCNGG 6 cut(s) 52, 87, 149, 150, 242, 251
Bme18I GGWCC 1 cut(s) 237
BmeT110I CYCGRG 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 239, 246
BmrFI CCNGG 6 cut(s) 52, 87, 149, 150, 242, 251
BmsI GCATC 2 cut(s) 91, 135
BpuMI CCSGG 4 cut(s) 52, 87, 149, 150
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 7 cut(s) 148, 149, 240, 249, 258, 273, 384
BsaWI WCCGGW 1 cut(s) 24
Bse118I RCCGGY 2 cut(s) 343, 413
BseBI CCWGG 2 cut(s) 242, 251
BseDI CCNNGG 7 cut(s) 148, 149, 240, 249, 258, 273, 384
BseGI GGATG 2 cut(s) 82, 126
BseMII CTCAG 2 cut(s) 317, 384
BseSI GKGCMC 2 cut(s) 57, 288
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 5 cut(s) 39, 60, 257, 269, 371
BshNI GGYRCC 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 7 cut(s) 25, 51, 87, 105, 149, 344, 414
BslFI GGGAC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 5 cut(s) 39, 60, 257, 269, 371
BsoBI CYCGRG 1 cut(s) 148
Bsp1286I GDGCHC 3 cut(s) 57, 288, 432
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 5 cut(s) 76, 96, 124, 193, 435
BspANI GGCC 5 cut(s) 39, 60, 257, 269, 371
BspCNI CTCAG 2 cut(s) 316, 385
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 239, 246
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 2 cut(s) 343, 413
BssAI RCCGGY 2 cut(s) 343, 413
BssECI CCNNGG 7 cut(s) 148, 149, 240, 249, 258, 273, 384
BssMI GATC 1 cut(s) 291
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 3 cut(s) 258, 273, 384
Bst2UI CCWGG 2 cut(s) 242, 251
Bst6I CTCTTC 2 cut(s) 26, 137
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 3 cut(s) 71, 80, 113
BstDEI CTNAG 3 cut(s) 303, 393, 438
BstF5I GGATG 2 cut(s) 82, 126
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 2 cut(s) 51, 423
BstHHI GCGC 2 cut(s) 50, 422
BstKTI GATC 1 cut(s) 294
BstMBI GATC 1 cut(s) 291
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 5 cut(s) 45, 66, 75, 79, 419
BstNI CCWGG 2 cut(s) 242, 251
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 6 cut(s) 50, 85, 147, 148, 240, 249
BstSLI GKGCMC 2 cut(s) 57, 288
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 327
BstZI CGGCCG 1 cut(s) 58
BsuRI GGCC 5 cut(s) 39, 60, 257, 269, 371
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 2 cut(s) 82, 126
Cac8I GCNNGC 3 cut(s) 71, 80, 113
CfoI GCGC 2 cut(s) 50, 422
Cfr10I RCCGGY 2 cut(s) 343, 413
Cfr13I GGNCC 1 cut(s) 237
Cfr9I CCCGGG 1 cut(s) 148
Csp6I GTAC 2 cut(s) 178, 245
CviAII CATG 1 cut(s) 112
CviQI GTAC 2 cut(s) 178, 245
DdeI CTNAG 3 cut(s) 303, 393, 438
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 26, 137
EarI CTCTTC 2 cut(s) 26, 137
EclXI CGGCCG 1 cut(s) 58
Eco130I CCWWGG 3 cut(s) 258, 273, 384
Eco47I GGWCC 1 cut(s) 237
Eco52I CGGCCG 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 240, 249
EcoT14I CCWWGG 3 cut(s) 258, 273, 384
ErhI CCWWGG 3 cut(s) 258, 273, 384
FaeI CATG 1 cut(s) 115
FaiI YATR 2 cut(s) 113, 173
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 111
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 341
FokI GGATG 2 cut(s) 69, 113
Fsp4HI GCNGC 1 cut(s) 341
GlaI GCGC 2 cut(s) 49, 421
GluI GCNGC 1 cut(s) 341
HaeII RGCGCY 2 cut(s) 51, 423
HaeIII GGCC 5 cut(s) 39, 60, 257, 269, 371
HapII CCGG 7 cut(s) 25, 51, 87, 105, 149, 344, 414
HhaI GCGC 2 cut(s) 50, 422
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 2 cut(s) 48, 420
HinP1I GCGC 2 cut(s) 48, 420
HincII GTYRAC 2 cut(s) 220, 226
HindII GTYRAC 2 cut(s) 220, 226
HinfI GANTC 2 cut(s) 12, 322
HpaII CCGG 7 cut(s) 25, 51, 87, 105, 149, 344, 414
HphI GGTGA 3 cut(s) 137, 358, 424
Hpy166II GTNNAC 3 cut(s) 220, 226, 349
Hpy188III TCNNGA 2 cut(s) 16, 319
Hpy8I GTNNAC 3 cut(s) 220, 226, 349
Hpy99I CGWCG 4 cut(s) 227, 299, 362, 365
HpyCH4IV ACGT 4 cut(s) 42, 222, 282, 297
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 66, 75, 79, 419
HpyF3I CTNAG 3 cut(s) 303, 393, 438
HpySE526I ACGT 4 cut(s) 42, 222, 282, 297
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 2 cut(s) 48, 420
KpnI GGTACC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 2 cut(s) 91, 135
MaeII ACGT 4 cut(s) 42, 222, 282, 297
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 6 cut(s) 31, 40, 43, 124, 409, 412
MhlI GDGCHC 3 cut(s) 57, 288, 432
MnlI CCTC 6 cut(s) 29, 83, 101, 140, 168, 247
MseI TTAA 1 cut(s) 405
MspI CCGG 7 cut(s) 25, 51, 87, 105, 149, 344, 414
MspR9I CCNGG 6 cut(s) 52, 87, 149, 150, 242, 251
MvaI CCWGG 2 cut(s) 242, 251
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 5 cut(s) 45, 66, 75, 79, 419
NciI CCSGG 4 cut(s) 52, 87, 149, 150
NdeII GATC 1 cut(s) 291
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 2 cut(s) 239, 246
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 12, 322
PfoI TCCNGGA 1 cut(s) 85
PkrI GCNGC 1 cut(s) 342
Psp6I CCWGG 2 cut(s) 240, 249
PspGI CCWGG 2 cut(s) 240, 249
PspN4I GGNNCC 2 cut(s) 239, 246
PspPI GGNCC 1 cut(s) 237
RsaI GTAC 2 cut(s) 179, 246
RsaNI GTAC 2 cut(s) 178, 245
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 1 cut(s) 237
ScrFI CCNGG 6 cut(s) 52, 87, 149, 150, 242, 251
SduI GDGCHC 3 cut(s) 57, 288, 432
SfaNI GCATC 2 cut(s) 91, 135
SinI GGWCC 1 cut(s) 237
SmaI CCCGGG 1 cut(s) 150
SphI GCATGC 1 cut(s) 115
SsiI CCGC 5 cut(s) 76, 96, 124, 193, 435
StyD4I CCNGG 6 cut(s) 50, 85, 147, 148, 240, 249
StyI CCWWGG 3 cut(s) 258, 273, 384
TaiI ACGT 4 cut(s) 45, 225, 285, 300
TaqI TCGA 3 cut(s) 135, 225, 294
TfiI GAWTC 2 cut(s) 12, 322
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 298
TspMI CCCGGG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 237
XceI RCATGY 1 cut(s) 115
XmaI CCCGGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 225
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.