Prupe.3G291800_v2.0.a1

Belongs to the universal ribosomal protein uL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002131
Physical Location & Seq
Reverse (-)
26146569 .. 26147921
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G291800.1

Sequence Viewer

Length: 444 bp
ATGACGACGAGGTTCAAAAAGAATCGCAAGAAGCGTGGCCACGTCAGCGCCGGGCATGGGCGTATCGGCAAGCACCGCAAGCATCCAGGCGGTCGCGGAAACGCCGGAGGTATGCACCACCATCGGATCCTCTTCGACAAGTACCATCCGGGGTATTTTGGTAAAGTCGGTATGAGGTACTTCCACAGGCTGCGCAACAAGTTCCACTGCCCCATCGTCAACCTCGACAAGCTGTGGTCACTTGTACCCCAGGATGTGAAGGACAAGGCCGCCAAAGGAAACGAGGCCCCATTGCTTGACGTCACCCAGTTCGGCTACTTCAAGGTGTTGGGTAAGGGCGTGTTGCCTAGCTCTCAGCCGTTGGTTGTGAAGGCCAAGCTGATTTCTAAGACCGCCGAGAAGAAGATCAAGGAGGCTGGCGGAGCCGTCGTGCTCACCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

148

Amino Acids

16.4

Weight (kDa)

10.67

Isoelectric Point (pI)

20.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
Acc16I TGCGCA 1 cut(s) 194
AccII CGCG 1 cut(s) 96
AciI CCGC 7 cut(s) 76, 90, 96, 270, 393, 420, 438
AclWI GGATC 2 cut(s) 121, 134
AcoI YGGCCR 1 cut(s) 37
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 3 cut(s) 143, 179, 246
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 2 cut(s) 16, 322
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 2 cut(s) 85, 249
AluBI AGCT 3 cut(s) 232, 351, 379
AluI AGCT 3 cut(s) 232, 351, 379
Alw21I GWGCWC 1 cut(s) 435
AlwI GGATC 2 cut(s) 121, 134
AoxI GGCC 4 cut(s) 37, 267, 285, 372
ApeKI GCWGC 1 cut(s) 190
AspLEI GCGC 2 cut(s) 50, 195
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 2 cut(s) 52, 150
AsuHPI GGTGA 2 cut(s) 295, 427
BalI TGGCCA 1 cut(s) 39
BamHI GGATCC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 177
BccI CCATC 3 cut(s) 129, 153, 221
BceAI ACGGC 2 cut(s) 343, 410
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 2 cut(s) 87, 251
BcnI CCSGG 2 cut(s) 52, 150
BfaI CTAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 2 cut(s) 191, 270
BlsI GCNGC 2 cut(s) 192, 271
Bme1390I CCNGG 4 cut(s) 52, 87, 150, 251
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 3 cut(s) 128, 288, 424
BmrFI CCNGG 4 cut(s) 52, 87, 150, 251
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 301
BpuMI CCSGG 2 cut(s) 52, 150
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 149, 249
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 290
BseBI CCWGG 2 cut(s) 87, 251
BseDI CCNNGG 2 cut(s) 149, 249
BseGI GGATG 3 cut(s) 82, 145, 259
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 4 cut(s) 39, 269, 287, 374
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 435
BsiSI CCGG 3 cut(s) 51, 105, 149
BslI CCNNNNNNNGG 1 cut(s) 57
BsnI GGCC 4 cut(s) 39, 269, 287, 374
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 2 cut(s) 126, 405
BspACI CCGC 7 cut(s) 76, 90, 96, 270, 393, 420, 438
BspANI GGCC 4 cut(s) 39, 269, 287, 374
BspCNI CTCAG 1 cut(s) 367
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 3 cut(s) 128, 288, 424
BspPI GGATC 2 cut(s) 121, 134
BsrDI GCAATG 1 cut(s) 290
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 149, 249
BssMI GATC 2 cut(s) 126, 405
BssNI GRCGYC 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 87, 251
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 71, 80, 418
BstDEI CTNAG 3 cut(s) 354, 387, 441
BstF5I GGATG 3 cut(s) 82, 145, 259
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 2 cut(s) 50, 195
BstKTI GATC 2 cut(s) 129, 408
BstMBI GATC 2 cut(s) 126, 405
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 4 cut(s) 45, 75, 79, 422
BstNI CCWGG 2 cut(s) 87, 251
BstSCI CCNGG 4 cut(s) 50, 85, 148, 249
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuRI GGCC 4 cut(s) 39, 269, 287, 374
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 3 cut(s) 82, 145, 259
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 3 cut(s) 71, 80, 418
CfoI GCGC 2 cut(s) 50, 195
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 3 cut(s) 142, 178, 245
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 1 cut(s) 56
CviQI GTAC 3 cut(s) 142, 178, 245
DdeI CTNAG 3 cut(s) 354, 387, 441
DpnI GATC 2 cut(s) 128, 407
DpnII GATC 2 cut(s) 126, 405
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EciI GGCGGA 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 85, 249
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 57, 113, 173
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 191, 270
FokI GGATG 3 cut(s) 69, 132, 266
Fsp4HI GCNGC 2 cut(s) 191, 270
FspBI CTAG 1 cut(s) 348
FspI TGCGCA 1 cut(s) 194
GlaI GCGC 2 cut(s) 49, 194
GluI GCNGC 2 cut(s) 191, 270
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 4 cut(s) 39, 269, 287, 374
HapII CCGG 3 cut(s) 51, 105, 149
HhaI GCGC 2 cut(s) 50, 195
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 2 cut(s) 48, 193
HinP1I GCGC 2 cut(s) 48, 193
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 1 cut(s) 22
HpaII CCGG 3 cut(s) 51, 105, 149
HphI GGTGA 2 cut(s) 295, 427
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 2 cut(s) 10, 431
HpyAV CCTTC 2 cut(s) 253, 364
HpyCH4IV ACGT 2 cut(s) 42, 300
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 75, 79, 422
HpyF3I CTNAG 3 cut(s) 354, 387, 441
HpySE526I ACGT 2 cut(s) 42, 300
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 2 cut(s) 48, 193
Kzo9I GATC 2 cut(s) 126, 405
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 348
MaeII ACGT 2 cut(s) 42, 300
MaeIII GTNAC 2 cut(s) 237, 301
MalI GATC 2 cut(s) 128, 407
MboI GATC 2 cut(s) 126, 405
MboII GAAGA 3 cut(s) 124, 412, 415
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 39
MluNI TGGCCA 1 cut(s) 39
MnlI CCTC 7 cut(s) 3, 101, 140, 168, 233, 277, 406
Mox20I TGGCCA 1 cut(s) 39
MscI TGGCCA 1 cut(s) 39
Msp20I TGGCCA 1 cut(s) 39
MspI CCGG 3 cut(s) 51, 105, 149
MspR9I CCNGG 4 cut(s) 52, 87, 150, 251
MvaI CCWGG 2 cut(s) 87, 251
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 45, 75, 79, 422
NciI CCSGG 2 cut(s) 52, 150
NdeII GATC 2 cut(s) 126, 405
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 3 cut(s) 128, 288, 424
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 2 cut(s) 237, 301
NsbI TGCGCA 1 cut(s) 194
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 222
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 192, 271
Psp6I CCWGG 2 cut(s) 85, 249
PspGI CCWGG 2 cut(s) 85, 249
PspN4I GGNNCC 3 cut(s) 128, 288, 424
PspPI GGNCC 1 cut(s) 286
PsuI RGATCY 1 cut(s) 126
RsaI GTAC 3 cut(s) 143, 179, 246
RsaNI GTAC 3 cut(s) 142, 178, 245
SatI GCNGC 2 cut(s) 191, 270
Sau3AI GATC 2 cut(s) 126, 405
Sau96I GGNCC 1 cut(s) 286
ScrFI CCNGG 4 cut(s) 52, 87, 150, 251
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 1 cut(s) 91
SsiI CCGC 7 cut(s) 76, 90, 96, 270, 393, 420, 438
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 4 cut(s) 50, 85, 148, 249
TaiI ACGT 2 cut(s) 45, 303
TaqI TCGA 2 cut(s) 135, 225
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 22
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 2 cut(s) 237, 301
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 2 cut(s) 237, 301
TspRI CASTG 1 cut(s) 212
XspI CTAG 1 cut(s) 348
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.