B3 domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 23 - 98 | 1.4e-10 | B3 DNA binding domain |
| B3 | PF02362 | 158 - 249 | 2.5e-23 | B3 DNA binding domain |
| B3 | PF02362 | 270 - 362 | 5.3e-21 | B3 DNA binding domain |
| B3 | PF02362 | 449 - 541 | 1e-23 | B3 DNA binding domain |
| B3 | PF02362 | 560 - 654 | 3.2e-25 | B3 DNA binding domain |
| B3 | PF02362 | 724 - 820 | 1.1e-15 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 483 |
| AccII | CGCG | 2 cut(s) | 161, 744 |
| AciI | CCGC | 3 cut(s) | 5, 742, 2703 |
| AclI | AACGTT | 1 cut(s) | 949 |
| AclWI | GGATC | 7 cut(s) | 15, 817, 1016, 1324, 1526, 2197, 2562 |
| AcsI | RAATTY | 3 cut(s) | 1366, 1381, 2487 |
| AcuI | CTGAAG | 2 cut(s) | 554, 1689 |
| AfaI | GTAC | 2 cut(s) | 1666, 2000 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 213, 2549, 2637 |
| AflIII | ACRYGT | 1 cut(s) | 159 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2117 |
| AhlI | ACTAGT | 2 cut(s) | 986, 1496 |
| AjnI | CCWGG | 3 cut(s) | 524, 1049, 2032 |
| Alw21I | GWGCWC | 2 cut(s) | 1379, 2252 |
| Alw26I | GTCTC | 2 cut(s) | 478, 601 |
| AlwI | GGATC | 7 cut(s) | 15, 817, 1016, 1324, 1526, 2197, 2562 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2379 |
| AoxI | GGCC | 1 cut(s) | 932 |
| ApoI | RAATTY | 3 cut(s) | 1366, 1381, 2487 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1432, 1464 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 400, 950, 1240, 1457, 1780, 2487 |
| AspLEI | GCGC | 1 cut(s) | 746 |
| AspS9I | GGNCC | 5 cut(s) | 308, 2098, 2111, 2370, 2700 |
| AsuC2I | CCSGG | 1 cut(s) | 2437 |
| AsuHPI | GGTGA | 3 cut(s) | 68, 263, 1714 |
| AsuII | TTCGAA | 1 cut(s) | 244 |
| AvaII | GGWCC | 5 cut(s) | 308, 2098, 2111, 2370, 2700 |
| BaeGI | GKGCMC | 2 cut(s) | 1589, 2465 |
| BanI | GGYRCC | 1 cut(s) | 483 |
| BanII | GRGCYC | 2 cut(s) | 1379, 2252 |
| BbsI | GAAGAC | 5 cut(s) | 432, 1281, 1677, 1821, 2604 |
| Bbv12I | GWGCWC | 2 cut(s) | 1379, 2252 |
| BccI | CCATC | 2 cut(s) | 181, 207 |
| BciT130I | CCWGG | 3 cut(s) | 526, 1051, 2034 |
| BclI | TGATCA | 3 cut(s) | 373, 1219, 1759 |
| BcnI | CCSGG | 1 cut(s) | 2437 |
| BcoDI | GTCTC | 2 cut(s) | 478, 601 |
| BcuI | ACTAGT | 2 cut(s) | 986, 1496 |
| BfaI | CTAG | 6 cut(s) | 987, 1305, 1497, 1845, 1928, 2544 |
| BfmI | CTRYAG | 5 cut(s) | 90, 1200, 1590, 1740, 2466 |
| BisI | GCNGC | 1 cut(s) | 742 |
| BlsI | GCNGC | 1 cut(s) | 743 |
| Bme1390I | CCNGG | 4 cut(s) | 526, 1051, 2034, 2437 |
| Bme18I | GGWCC | 5 cut(s) | 308, 2098, 2111, 2370, 2700 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2117 |
| BmgT120I | GGNCC | 5 cut(s) | 308, 2098, 2111, 2370, 2700 |
| BmiI | GGNNCC | 3 cut(s) | 485, 1048, 2434 |
| BmrFI | CCNGG | 4 cut(s) | 526, 1051, 2034, 2437 |
| BmsI | GCATC | 5 cut(s) | 881, 1178, 1388, 2044, 2261 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2152 |
| BpiI | GAAGAC | 5 cut(s) | 432, 1281, 1677, 1821, 2604 |
| BpmI | CTGGAG | 2 cut(s) | 1548, 2424 |
| Bpu10I | CCTNAGC | 1 cut(s) | 488 |
| Bpu14I | TTCGAA | 1 cut(s) | 244 |
| BpuEI | CTTGAG | 1 cut(s) | 2734 |
| BpuMI | CCSGG | 1 cut(s) | 2437 |
| BsaBI | GATNNNNATC | 3 cut(s) | 363, 1218, 1758 |
| BsaJI | CCNNGG | 5 cut(s) | 854, 1361, 2071, 2383, 2436 |
| BsaWI | WCCGGW | 1 cut(s) | 644 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 270, 300 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 213, 2549, 2637 |
| Bse1I | ACTGG | 8 cut(s) | 253, 1044, 1554, 1811, 2100, 2373, 2430, 2727 |
| Bse3DI | GCAATG | 2 cut(s) | 384, 499 |
| Bse8I | GATNNNNATC | 3 cut(s) | 363, 1218, 1758 |
| BseBI | CCWGG | 3 cut(s) | 526, 1051, 2034 |
| BseDI | CCNNGG | 5 cut(s) | 854, 1361, 2071, 2383, 2436 |
| BseGI | GGATG | 5 cut(s) | 218, 729, 1219, 2070, 2276 |
| BseJI | GATNNNNATC | 3 cut(s) | 363, 1218, 1758 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 213, 2549, 2637 |
| BseMI | GCAATG | 2 cut(s) | 384, 499 |
| BseMII | CTCAG | 2 cut(s) | 489, 2149 |
| BseNI | ACTGG | 8 cut(s) | 253, 1044, 1554, 1811, 2100, 2373, 2430, 2727 |
| BseRI | GAGGAG | 3 cut(s) | 1673, 2524, 2600 |
| BseSI | GKGCMC | 2 cut(s) | 1589, 2465 |
| Bsh1236I | CGCG | 2 cut(s) | 161, 744 |
| BshFI | GGCC | 1 cut(s) | 934 |
| BshNI | GGYRCC | 1 cut(s) | 483 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1379, 2252 |
| BsiSI | CCGG | 2 cut(s) | 645, 2436 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 213, 2549, 2637 |
| BsmAI | GTCTC | 2 cut(s) | 478, 601 |
| BsnI | GGCC | 1 cut(s) | 934 |
| Bsp119I | TTCGAA | 1 cut(s) | 244 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1379, 1589, 2252, 2465 |
| BspACI | CCGC | 3 cut(s) | 5, 742, 2703 |
| BspANI | GGCC | 1 cut(s) | 934 |
| BspCNI | CTCAG | 2 cut(s) | 488, 2148 |
| BspFNI | CGCG | 2 cut(s) | 161, 744 |
| BspLI | GGNNCC | 3 cut(s) | 485, 1048, 2434 |
| BspMAI | CTGCAG | 2 cut(s) | 1744, 2470 |
| BspPI | GGATC | 7 cut(s) | 15, 817, 1016, 1324, 1526, 2197, 2562 |
| BspQI | GCTCTTC | 1 cut(s) | 2656 |
| BspT104I | TTCGAA | 1 cut(s) | 244 |
| BspT107I | GGYRCC | 1 cut(s) | 483 |
| BsrDI | GCAATG | 2 cut(s) | 384, 499 |
| BsrI | ACTGG | 8 cut(s) | 253, 1044, 1554, 1811, 2100, 2373, 2430, 2727 |
| BssECI | CCNNGG | 5 cut(s) | 854, 1361, 2071, 2383, 2436 |
| BssT1I | CCWWGG | 4 cut(s) | 854, 1361, 2071, 2383 |
| Bst2UI | CCWGG | 3 cut(s) | 526, 1051, 2034 |
| Bst6I | CTCTTC | 9 cut(s) | 21, 1140, 1247, 1650, 1787, 2231, 2299, 2577, 2656 |
| BstBI | TTCGAA | 1 cut(s) | 244 |
| BstC8I | GCNNGC | 3 cut(s) | 626, 2011, 2015 |
| BstDEI | CTNAG | 8 cut(s) | 149, 475, 488, 515, 830, 1904, 2135, 2760 |
| BstF5I | GGATG | 5 cut(s) | 218, 729, 1219, 2070, 2276 |
| BstFNI | CGCG | 2 cut(s) | 161, 744 |
| BstHHI | GCGC | 1 cut(s) | 746 |
| BstMAI | GTCTC | 2 cut(s) | 478, 601 |
| BstNI | CCWGG | 3 cut(s) | 526, 1051, 2034 |
| BstNSI | RCATGY | 3 cut(s) | 113, 628, 1731 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2152 |
| BstSCI | CCNGG | 4 cut(s) | 524, 1049, 2032, 2435 |
| BstSFI | CTRYAG | 5 cut(s) | 90, 1200, 1590, 1740, 2466 |
| BstSLI | GKGCMC | 2 cut(s) | 1589, 2465 |
| BstUI | CGCG | 2 cut(s) | 161, 744 |
| BstV2I | GAAGAC | 5 cut(s) | 432, 1281, 1677, 1821, 2604 |
| BstX2I | RGATCY | 4 cut(s) | 809, 1316, 2189, 2567 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 981, 2108 |
| BstYI | RGATCY | 4 cut(s) | 809, 1316, 2189, 2567 |
| BsuRI | GGCC | 1 cut(s) | 934 |
| BtgZI | GCGATG | 1 cut(s) | 2151 |
| BtsCI | GGATG | 5 cut(s) | 218, 729, 1219, 2070, 2276 |
| BtsI | GCAGTG | 4 cut(s) | 901, 1408, 2196, 2554 |
| BtsIMutI | CAGTG | 5 cut(s) | 901, 1408, 2143, 2196, 2554 |
| Cac8I | GCNNGC | 3 cut(s) | 626, 2011, 2015 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2379 |
| CfoI | GCGC | 1 cut(s) | 746 |
| Cfr13I | GGNCC | 5 cut(s) | 308, 2098, 2111, 2370, 2700 |
| CpoI | CGGWCCG | 1 cut(s) | 2700 |
| CseI | GACGC | 3 cut(s) | 150, 154, 167 |
| CsiI | ACCWGGT | 1 cut(s) | 2032 |
| Csp6I | GTAC | 2 cut(s) | 1665, 1999 |
| CspI | CGGWCCG | 1 cut(s) | 2700 |
| CviQI | GTAC | 2 cut(s) | 1665, 1999 |
| DdeI | CTNAG | 8 cut(s) | 149, 475, 488, 515, 830, 1904, 2135, 2760 |
| DraI | TTTAAA | 5 cut(s) | 909, 1036, 1416, 1546, 2289 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2117 |
| Eam1104I | CTCTTC | 9 cut(s) | 21, 1140, 1247, 1650, 1787, 2231, 2299, 2577, 2656 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2117 |
| EarI | CTCTTC | 9 cut(s) | 21, 1140, 1247, 1650, 1787, 2231, 2299, 2577, 2656 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Ecl136II | GAGCTC | 2 cut(s) | 1377, 2250 |
| Eco130I | CCWWGG | 4 cut(s) | 854, 1361, 2071, 2383 |
| Eco24I | GRGCYC | 2 cut(s) | 1379, 2252 |
| Eco47I | GGWCC | 5 cut(s) | 308, 2098, 2111, 2370, 2700 |
| Eco53kI | GAGCTC | 2 cut(s) | 1377, 2250 |
| Eco57I | CTGAAG | 2 cut(s) | 554, 1689 |
| EcoICRI | GAGCTC | 2 cut(s) | 1377, 2250 |
| EcoRII | CCWGG | 3 cut(s) | 524, 1049, 2032 |
| EcoT14I | CCWWGG | 4 cut(s) | 854, 1361, 2071, 2383 |
| EcoT38I | GRGCYC | 2 cut(s) | 1379, 2252 |
| ErhI | CCWWGG | 4 cut(s) | 854, 1361, 2071, 2383 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 2743 |
| FbaI | TGATCA | 3 cut(s) | 373, 1219, 1759 |
| Fnu4HI | GCNGC | 1 cut(s) | 742 |
| FokI | GGATG | 5 cut(s) | 225, 716, 1226, 2077, 2283 |
| FriOI | GRGCYC | 2 cut(s) | 1379, 2252 |
| Fsp4HI | GCNGC | 1 cut(s) | 742 |
| FspBI | CTAG | 6 cut(s) | 987, 1305, 1497, 1845, 1928, 2544 |
| GlaI | GCGC | 1 cut(s) | 745 |
| GluI | GCNGC | 1 cut(s) | 742 |
| GsuI | CTGGAG | 2 cut(s) | 1548, 2424 |
| HaeIII | GGCC | 1 cut(s) | 934 |
| HapII | CCGG | 2 cut(s) | 645, 2436 |
| HgaI | GACGC | 3 cut(s) | 150, 154, 167 |
| HhaI | GCGC | 1 cut(s) | 746 |
| Hin6I | GCGC | 1 cut(s) | 744 |
| HinP1I | GCGC | 1 cut(s) | 744 |
| HincII | GTYRAC | 2 cut(s) | 1725, 2078 |
| HindII | GTYRAC | 2 cut(s) | 1725, 2078 |
| HindIII | AAGCTT | 1 cut(s) | 2728 |
| HpaII | CCGG | 2 cut(s) | 645, 2436 |
| HphI | GGTGA | 3 cut(s) | 68, 263, 1714 |
| Hpy166II | GTNNAC | 5 cut(s) | 868, 1003, 1725, 2078, 2141 |
| Hpy8I | GTNNAC | 5 cut(s) | 868, 1003, 1725, 2078, 2141 |
| Hpy99I | CGWCG | 3 cut(s) | 166, 212, 263 |
| HpyCH4IV | ACGT | 1 cut(s) | 949 |
| HpyF3I | CTNAG | 8 cut(s) | 149, 475, 488, 515, 830, 1904, 2135, 2760 |
| HpySE526I | ACGT | 1 cut(s) | 949 |
| HspAI | GCGC | 1 cut(s) | 744 |
| Ksp22I | TGATCA | 3 cut(s) | 373, 1219, 1759 |
| LguI | GCTCTTC | 1 cut(s) | 2656 |
| LmnI | GCTCC | 1 cut(s) | 858 |
| LweI | GCATC | 5 cut(s) | 881, 1178, 1388, 2044, 2261 |
| MabI | ACCWGGT | 1 cut(s) | 2032 |
| MaeI | CTAG | 6 cut(s) | 987, 1305, 1497, 1845, 1928, 2544 |
| MaeII | ACGT | 1 cut(s) | 949 |
| MflI | RGATCY | 4 cut(s) | 809, 1316, 2189, 2567 |
| MhlI | GDGCHC | 4 cut(s) | 1379, 1589, 2252, 2465 |
| MluCI | AATT | 8 cut(s) | 1366, 1381, 1990, 2081, 2283, 2315, 2487, 2524 |
| MluI | ACGCGT | 1 cut(s) | 159 |
| MlyI | GAGTC | 3 cut(s) | 446, 1295, 1835 |
| MmeI | TCCRAC | 7 cut(s) | 144, 629, 1024, 1103, 1113, 1534, 2410 |
| MroXI | GAANNNNTTC | 6 cut(s) | 400, 950, 1240, 1457, 1780, 2487 |
| MseI | TTAA | 9 cut(s) | 530, 908, 1035, 1415, 1545, 1962, 1989, 2288, 2687 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1111, 1621, 2022, 2497 |
| MspI | CCGG | 2 cut(s) | 645, 2436 |
| MspR9I | CCNGG | 4 cut(s) | 526, 1051, 2034, 2437 |
| MssI | GTTTAAAC | 2 cut(s) | 1036, 1546 |
| MvaI | CCWGG | 3 cut(s) | 526, 1051, 2034 |
| MvnI | CGCG | 2 cut(s) | 161, 744 |
| NciI | CCSGG | 1 cut(s) | 2437 |
| NlaIV | GGNNCC | 3 cut(s) | 485, 1048, 2434 |
| NmuCI | GTSAC | 8 cut(s) | 142, 251, 295, 814, 961, 1861, 2194, 2680 |
| NspI | RCATGY | 3 cut(s) | 113, 628, 1731 |
| NspV | TTCGAA | 1 cut(s) | 244 |
| PaeI | GCATGC | 1 cut(s) | 628 |
| PciSI | GCTCTTC | 1 cut(s) | 2656 |
| PdmI | GAANNNNTTC | 6 cut(s) | 400, 950, 1240, 1457, 1780, 2487 |
| PflFI | GACNNNGTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 1 cut(s) | 743 |
| PleI | GAGTC | 3 cut(s) | 445, 1294, 1834 |
| PmeI | GTTTAAAC | 2 cut(s) | 1036, 1546 |
| PpsI | GAGTC | 3 cut(s) | 445, 1294, 1834 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2152 |
| Psp124BI | GAGCTC | 2 cut(s) | 1379, 2252 |
| Psp1406I | AACGTT | 1 cut(s) | 949 |
| Psp6I | CCWGG | 3 cut(s) | 524, 1049, 2032 |
| PspGI | CCWGG | 3 cut(s) | 524, 1049, 2032 |
| PspN4I | GGNNCC | 3 cut(s) | 485, 1048, 2434 |
| PspPI | GGNCC | 5 cut(s) | 308, 2098, 2111, 2370, 2700 |
| PstI | CTGCAG | 2 cut(s) | 1744, 2470 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2379 |
| PsuI | RGATCY | 4 cut(s) | 809, 1316, 2189, 2567 |
| PsyI | GACNNNGTC | 1 cut(s) | 257 |
| RsaI | GTAC | 2 cut(s) | 1666, 2000 |
| RsaNI | GTAC | 2 cut(s) | 1665, 1999 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1111, 1621, 2022, 2497 |
| Rsr2I | CGGWCCG | 1 cut(s) | 2700 |
| RsrII | CGGWCCG | 1 cut(s) | 2700 |
| SacI | GAGCTC | 2 cut(s) | 1379, 2252 |
| SapI | GCTCTTC | 1 cut(s) | 2656 |
| SaqAI | TTAA | 9 cut(s) | 530, 908, 1035, 1415, 1545, 1962, 1989, 2288, 2687 |
| SatI | GCNGC | 1 cut(s) | 742 |
| Sau96I | GGNCC | 5 cut(s) | 308, 2098, 2111, 2370, 2700 |
| SchI | GAGTC | 3 cut(s) | 446, 1295, 1835 |
| ScrFI | CCNGG | 4 cut(s) | 526, 1051, 2034, 2437 |
| SduI | GDGCHC | 4 cut(s) | 1379, 1589, 2252, 2465 |
| SexAI | ACCWGGT | 1 cut(s) | 2032 |
| SfaNI | GCATC | 5 cut(s) | 881, 1178, 1388, 2044, 2261 |
| SfcI | CTRYAG | 5 cut(s) | 90, 1200, 1590, 1740, 2466 |
| SfuI | TTCGAA | 1 cut(s) | 244 |
| SinI | GGWCC | 5 cut(s) | 308, 2098, 2111, 2370, 2700 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1111, 1621, 2022, 2497 |
| SmlI | CTYRAG | 1 cut(s) | 2749 |
| SmoI | CTYRAG | 1 cut(s) | 2749 |
| SpeI | ACTAGT | 2 cut(s) | 986, 1496 |
| SphI | GCATGC | 1 cut(s) | 628 |
| Sse9I | AATT | 8 cut(s) | 1366, 1381, 1990, 2081, 2283, 2315, 2487, 2524 |
| SsiI | CCGC | 3 cut(s) | 5, 742, 2703 |
| SspI | AATATT | 2 cut(s) | 782, 1771 |
| SspMI | CTAG | 6 cut(s) | 987, 1305, 1497, 1845, 1928, 2544 |
| SstI | GAGCTC | 2 cut(s) | 1379, 2252 |
| StyD4I | CCNGG | 4 cut(s) | 524, 1049, 2032, 2435 |
| StyI | CCWWGG | 4 cut(s) | 854, 1361, 2071, 2383 |
| TaiI | ACGT | 1 cut(s) | 952 |
| TaqI | TCGA | 4 cut(s) | 104, 244, 1184, 1888 |
| TasI | AATT | 8 cut(s) | 1366, 1381, 1990, 2081, 2283, 2315, 2487, 2524 |
| TatI | WGTACW | 1 cut(s) | 1998 |
| TauI | GCSGC | 1 cut(s) | 744 |
| Tru1I | TTAA | 9 cut(s) | 530, 908, 1035, 1415, 1545, 1962, 1989, 2288, 2687 |
| Tru9I | TTAA | 9 cut(s) | 530, 908, 1035, 1415, 1545, 1962, 1989, 2288, 2687 |
| TscAI | CASTG | 5 cut(s) | 901, 1408, 2143, 2203, 2554 |
| TseFI | GTSAC | 8 cut(s) | 142, 251, 295, 814, 961, 1861, 2194, 2680 |
| Tsp45I | GTSAC | 8 cut(s) | 142, 251, 295, 814, 961, 1861, 2194, 2680 |
| TspGWI | ACGGA | 2 cut(s) | 225, 722 |
| TspRI | CASTG | 5 cut(s) | 901, 1408, 2143, 2203, 2554 |
| Tth111I | GACNNNGTC | 1 cut(s) | 257 |
| VpaK11BI | GGWCC | 5 cut(s) | 308, 2098, 2111, 2370, 2700 |
| XapI | RAATTY | 3 cut(s) | 1366, 1381, 2487 |
| XbaI | TCTAGA | 1 cut(s) | 1927 |
| XceI | RCATGY | 3 cut(s) | 113, 628, 1731 |
| XmnI | GAANNNNTTC | 6 cut(s) | 400, 950, 1240, 1457, 1780, 2487 |
| XspI | CTAG | 6 cut(s) | 987, 1305, 1497, 1845, 1928, 2544 |