Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001490

Physical Location & Seq

Genomic Coordinates Reverse (-)

15343327 .. 15343986

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31685.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGATGCTTAAGGTTGATAGTAGAGGAGCTGTGTATATTATTGGTGGTAATGACTGGAAAAGTTTCTGTGCCGCAAATGAAGTAGGCGCAGGGGAGTCACTAGCTTTGGAGTTGATCCAAGGAGGTGTAAGTCCTTTGCTCAAGTTCTGCTCCAAGATGGAGCAACCCTCATTCAAAGCAGAGGATGGGAGACACAAGAGAGCTCGAGTCCAAAATAGGAGCCAGGAAACAGATAAGGGAGCAGAAACTTCTAGAGCATCTACAATGGGACCGAAGCTTGAGATAACTGAAAAAGGAGAACCCTCTCGAGCATCTACAATGAGACCGAAAGTTGAGATAAGGGAGAAAATAGCTGAAACGGGAGAACCCTCTCGAGCATCTAACAAATCTAGTGGTATTGAAGGAAACTTGCAGCACACGAAACCTTGCTCAGTCAAAACAGATCAGTTGGCCAAGGTGAAAGAGAGCGTTGTAGATACGTTAACTAGTATCGGGCGGTTCCAAGCAGAGCTCGAGACAATGAAACGTAAACTAGAAGATTCATTGCAGGAACTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

186

Amino Acids

20.38

Weight (kDa)

8.73

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT2G12170 AT2G13985 AT2G24645 AT2G24645 AT2G24645 AT2G24645 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24681 AT2G24681 AT2G24690 AT2G24690 AT2G24696 AT2G24700 AT4G00260 AT4G31610 AT4G31610 AT4G31615 AT4G31620 AT4G31620 AT4G31630 AT4G31640 AT4G31650 AT4G31650 AT4G31660 AT4G31680 AT4G31680 AT4G31685 AT4G31690 AT4G32970 AT5G32460

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT2G12170 AT2G13985 AT2G24645 AT2G24645 AT2G24645 AT2G24645 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24681 AT2G24681 AT2G24690 AT2G24690 AT2G24696 AT2G24700 AT4G00260 AT4G31610 AT4G31610 AT4G31615 AT4G31620 AT4G31620 AT4G31630 AT4G31640 AT4G31650 AT4G31650 AT4G31660 AT4G31680 AT4G31680 AT4G31685 AT4G31690 AT4G32970 AT5G32460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 496
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	450
AflII	CTTAAG	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	175, 401
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	6 cut(s)	29, 104, 203, 277, 353, 511
AluI	AGCT	6 cut(s)	29, 104, 203, 277, 353, 511
Alw21I	GWGCWC	2 cut(s)	205, 513
Alw26I	GTCTC	3 cut(s)	184, 316, 509
AlwI	GGATC	1 cut(s)	109
Ama87I	CYCGRG	4 cut(s)	204, 306, 372, 512
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	469
AvaI	CYCGRG	4 cut(s)	204, 306, 372, 512
AvaII	GGWCC	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	452
BanII	GRGCYC	2 cut(s)	205, 513
Bbv12I	GWGCWC	2 cut(s)	205, 513
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	2 cut(s)	151, 179
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	3 cut(s)	184, 316, 509
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	6 cut(s)	101, 252, 390, 486, 533, 559
BfrI	CTTAAG	1 cut(s)	8
BisI	GCNGC	2 cut(s)	72, 413
BlsI	GCNGC	2 cut(s)	73, 414
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	269
BmeT110I	CYCGRG	4 cut(s)	204, 306, 372, 512
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	3 cut(s)	221, 270, 500
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	3 cut(s)	266, 320, 386
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpuEI	CTTGAG	2 cut(s)	125, 299
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	118, 453
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	118, 453
BseGI	GGATG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	542
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	452
BsiHKAI	GWGCWC	2 cut(s)	205, 513
BsiHKCI	CYCGRG	4 cut(s)	204, 306, 372, 512
BslFI	GGGAC	1 cut(s)	282
BsmAI	GTCTC	3 cut(s)	184, 316, 509
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	4 cut(s)	204, 306, 372, 512
Bsp1286I	GDGCHC	2 cut(s)	205, 513
Bsp143I	GATC	2 cut(s)	114, 442
BspACI	CCGC	2 cut(s)	72, 496
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	443
BspLI	GGNNCC	3 cut(s)	221, 270, 500
BspPI	GGATC	1 cut(s)	109
BspTI	CTTAAG	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	118, 453
BssMI	GATC	2 cut(s)	114, 442
BssT1I	CCWWGG	2 cut(s)	118, 453
Bst2UI	CCWGG	1 cut(s)	224
BstAFI	CTTAAG	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	117, 445
BstMAI	GTCTC	3 cut(s)	184, 316, 509
BstMBI	GATC	2 cut(s)	114, 442
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	452
BtsCI	GGATG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	269
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviJI	RGCY	8 cut(s)	29, 104, 203, 222, 277, 353, 452, 511
CviKI_1	RGCY	8 cut(s)	29, 104, 203, 222, 277, 353, 452, 511
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	2 cut(s)	116, 444
DpnII	GATC	2 cut(s)	114, 442
EaeI	YGGCCR	1 cut(s)	450
Ecl136II	GAGCTC	2 cut(s)	203, 511
Eco130I	CCWWGG	2 cut(s)	118, 453
Eco24I	GRGCYC	2 cut(s)	205, 513
Eco31I	GGTCTC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	269
Eco53kI	GAGCTC	2 cut(s)	203, 511
Eco88I	CYCGRG	4 cut(s)	204, 306, 372, 512
EcoICRI	GAGCTC	2 cut(s)	203, 511
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	2 cut(s)	118, 453
EcoT38I	GRGCYC	2 cut(s)	205, 513
ErhI	CCWWGG	2 cut(s)	118, 453
FaiI	YATR	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	72, 413
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	2 cut(s)	205, 513
Fsp4HI	GCNGC	2 cut(s)	72, 413
FspBI	CTAG	6 cut(s)	101, 252, 390, 486, 533, 559
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	2 cut(s)	72, 413
HaeIII	GGCC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	3 cut(s)	95, 207, 539
HpaI	GTTAAC	1 cut(s)	483
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	2 cut(s)	483, 530
Hpy188III	TCNNGA	4 cut(s)	252, 306, 372, 514
Hpy8I	GTNNAC	2 cut(s)	483, 530
HpyAV	CCTTC	1 cut(s)	395
HpyCH4IV	ACGT	2 cut(s)	479, 526
HpyCH4V	TGCA	2 cut(s)	412, 547
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	2 cut(s)	479, 526
HspAI	GCGC	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	114, 442
LmnI	GCTCC	5 cut(s)	26, 155, 160, 219, 239
LpnPI	CCDG	5 cut(s)	40, 75, 209, 236, 533
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	3 cut(s)	266, 320, 386
MaeI	CTAG	6 cut(s)	101, 252, 390, 486, 533, 559
MaeII	ACGT	2 cut(s)	479, 526
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	2 cut(s)	116, 444
MboI	GATC	2 cut(s)	114, 442
MboII	GAAGA	1 cut(s)	548
MhlI	GDGCHC	2 cut(s)	205, 513
MlsI	TGGCCA	1 cut(s)	452
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	2 cut(s)	104, 216
MnlI	CCTC	6 cut(s)	17, 116, 175, 178, 313, 379
Mox20I	TGGCCA	1 cut(s)	452
MroXI	GAANNNNTTC	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	2 cut(s)	9, 482
Msp20I	TGGCCA	1 cut(s)	452
MspCI	CTTAAG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	114, 442
NlaIV	GGNNCC	3 cut(s)	221, 270, 500
NmuCI	GTSAC	1 cut(s)	96
PaeR7I	CTCGAG	4 cut(s)	204, 306, 372, 512
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	73, 414
PleI	GAGTC	2 cut(s)	103, 215
PpsI	GAGTC	2 cut(s)	103, 215
Psp124BI	GAGCTC	2 cut(s)	205, 513
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	221, 270, 500
PspPI	GGNCC	1 cut(s)	269
PspXI	VCTCGAGB	1 cut(s)	204
SacI	GAGCTC	2 cut(s)	205, 513
SaqAI	TTAA	2 cut(s)	9, 482
SatI	GCNGC	2 cut(s)	72, 413
Sau3AI	GATC	2 cut(s)	114, 442
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	2 cut(s)	104, 216
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	205, 513
SfaNI	GCATC	3 cut(s)	266, 320, 386
Sfr274I	CTCGAG	4 cut(s)	204, 306, 372, 512
SinI	GGWCC	1 cut(s)	269
SlaI	CTCGAG	4 cut(s)	204, 306, 372, 512
SmlI	CTYRAG	7 cut(s)	8, 140, 204, 278, 306, 372, 512
SmoI	CTYRAG	7 cut(s)	8, 140, 204, 278, 306, 372, 512
SpeI	ACTAGT	1 cut(s)	485
SsiI	CCGC	2 cut(s)	72, 496
SspMI	CTAG	6 cut(s)	101, 252, 390, 486, 533, 559
SstI	GAGCTC	2 cut(s)	205, 513
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	2 cut(s)	118, 453
TaiI	ACGT	2 cut(s)	482, 529
TaqI	TCGA	4 cut(s)	205, 307, 373, 513
TaqII	GACCGA	2 cut(s)	286, 340
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	9, 482
Tru9I	TTAA	2 cut(s)	9, 482
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	3 cut(s)	93, 531, 536
Vha464I	CTTAAG	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	251
XhoI	CTCGAG	4 cut(s)	204, 306, 372, 512
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	6 cut(s)	101, 252, 390, 486, 533, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.