AT2G24696

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001490
Physical Location & Seq
Reverse (-)
10509068 .. 10510902
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24696.1

Sequence Viewer

Length: 1128 bp
ATGCTGTTCAACGTCAGCGCCTGTGACATCCGTGACAAACCCATGCCCAGCAACAATGATATCAACAAGATCGATCAGCTTGAAAGAGTAAAAAAAGTGAGGAAGAACAGTTCACAATCCGAAGCTGGCTCTTCTTCATCTGGCAACTCTTCTTTTGTAGCCCTTGTCAAGGCTTCAAATCTAAAGGAAGATGCACTGTATCTTCCACAAGATTGCACAAGTTCTAATGGTCTAAATAAAAAATGCCGCAAGATTTTTCTAACAGATGGAGGGGATAGATCATGGGAAATGGATCTGAAGTTCGACAAAAACTTAGATAGTTTTTGCATAACCAGAGGTTGGAGACATTTCTGTGACGAAAACGGGAAAAAGTTACCAAACCAGGAGAGATTCGTGACTGTAAGACTCGTACCTGACTGTCTTAGAAACAAAAGATTGTATCTCTCAAGGCGATTCCTGAAAAATAATGGCTTGGGCGAACCAAAGATGGTAACACTAGTGGGAACAGATGGTACGAGGATATTGGCTAATCTTTTACGGGAAAGCACAGGAAGAATGAGCTTGGGAAGGGGATGGGTAGATTTTGCGAAAGCCAATAGGTTGAAGATAGGTGAGTACTTTACACTGGAGTCCATTTGGGAAAATGACTCTCCTATTCTCAGTTTGTATGGGACAAATACTTCCAAAAGTGATAAAAGGAAGCGTAGAGAGAACTTTCCAGTAGCTTGTGAGAAAGAGTATGTGTCCACTGAGGCTAGAAATAGAAATGAACCCGAGAAAGACAAGAACACAGAGGAGATGATTAATCAAGCATCACTAAGCGAAAACCGATTAGTGATAACACTCGTACCAGAAGATGTCAAAGCCGGTATGCTGCGTCTTCCAAGTCACTTCATGAAAGCTAATGGCATAGACAAAGTTGGAAAAATATATATGTTGGGTATAAATGAAATGGAGTGGTGGTGGGGAGATCTATTGACAAGAGATGGAATCGTATCTGTAGGATGTGGTTGGAGATATTTCTGTGAATCTAATGGCGTAAAGATTGGAAAGTCTTTCACCTTAGAATGTATGTACAAATATGACACAAGGCCCGTATTTAAATTCTGTCCCAAGTCCGGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

375

Amino Acids

42.84

Weight (kDa)

9.26

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 53 - 122 4.7e-14 B3 DNA binding domain
B3 PF02362 131 - 223 5.2e-15 B3 DNA binding domain
B3 PF02362 281 - 372 5.1e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 339
AciI CCGC 1 cut(s) 247
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 1103
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 5 cut(s) 411, 514, 617, 849, 1076
AfiI CCNNNNNNNGG 4 cut(s) 169, 339, 1118, 1119
AgsI TTSAA 4 cut(s) 10, 83, 177, 604
AhlI ACTAGT 1 cut(s) 496
AjnI CCWGG 1 cut(s) 381
AloI GAACNNNNNNTCC 4 cut(s) 94, 126, 284, 316
AluBI AGCT 5 cut(s) 79, 125, 561, 725, 902
AluI AGCT 5 cut(s) 79, 125, 561, 725, 902
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 1 cut(s) 300
AlwNI CAGNNNCTG 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 1 cut(s) 1091
ApeKI GCWGC 1 cut(s) 874
ApoI RAATTY 1 cut(s) 1103
AseI ATTAAT 1 cut(s) 804
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 1092
AsuC2I CCSGG 1 cut(s) 1120
AsuHPI GGTGA 2 cut(s) 623, 1051
AvaI CYCGRG 1 cut(s) 773
BaeI ACNNNNGTAYC 2 cut(s) 831, 864
BbsI GAAGAC 1 cut(s) 872
BbvI GCAGC 1 cut(s) 861
BccI CCATC 5 cut(s) 260, 481, 503, 567, 980
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 1 cut(s) 1120
BcoDI GTCTC 1 cut(s) 337
BcuI ACTAGT 1 cut(s) 496
BfaI CTAG 2 cut(s) 497, 756
BfmI CTRYAG 1 cut(s) 999
BfoI RGCGCY 1 cut(s) 21
BglII AGATCT 1 cut(s) 970
BisI GCNGC 2 cut(s) 247, 875
BlsI GCNGC 2 cut(s) 248, 876
BmcAI AGTACT 1 cut(s) 617
Bme1390I CCNGG 2 cut(s) 383, 1120
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 1 cut(s) 1092
BmrFI CCNGG 2 cut(s) 383, 1120
BmsI GCATC 2 cut(s) 181, 821
BpiI GAAGAC 1 cut(s) 872
BpmI CTGGAG 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 1120
Bsa29I ATCGAT 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 947, 977
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 339, 1118, 1119
Bse118I RCCGGY 1 cut(s) 866
Bse1I ACTGG 2 cut(s) 630, 719
BseBI CCWGG 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 72
BseGI GGATG 3 cut(s) 27, 578, 1010
BseLI CCNNNNNNNGG 4 cut(s) 169, 339, 1118, 1119
BseMII CTCAG 2 cut(s) 673, 741
BseNI ACTGG 2 cut(s) 630, 719
BseRI GAGGAG 1 cut(s) 809
BseXI GCAGC 1 cut(s) 861
BseYI CCCAGC 1 cut(s) 47
BshFI GGCC 1 cut(s) 1093
BshVI ATCGAT 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 2 cut(s) 867, 1119
BslFI GGGAC 2 cut(s) 685, 1095
BslI CCNNNNNNNGG 4 cut(s) 169, 339, 1118, 1119
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 2 cut(s) 685, 1095
BsnI GGCC 1 cut(s) 1093
BsoBI CYCGRG 1 cut(s) 773
Bsp1407I TGTACA 1 cut(s) 1074
Bsp143I GATC 5 cut(s) 69, 73, 278, 292, 970
BspACI CCGC 1 cut(s) 247
BspANI GGCC 1 cut(s) 1093
BspCNI CTCAG 2 cut(s) 672, 742
BspDI ATCGAT 1 cut(s) 72
BspHI TCATGA 1 cut(s) 894
BspPI GGATC 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 866
BsrGI TGTACA 1 cut(s) 1074
BsrI ACTGG 2 cut(s) 630, 719
BssAI RCCGGY 1 cut(s) 866
BssMI GATC 5 cut(s) 69, 73, 278, 292, 970
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 4 cut(s) 110, 198, 400, 419
Bst6I CTCTTC 2 cut(s) 136, 154
BstAUI TGTACA 1 cut(s) 1074
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 6 cut(s) 313, 422, 659, 750, 818, 1063
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 27, 578, 1010
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 5 cut(s) 72, 76, 281, 295, 973
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 5 cut(s) 69, 73, 278, 292, 970
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 381, 1118
BstSFI CTRYAG 1 cut(s) 999
BstV1I GCAGC 1 cut(s) 861
BstV2I GAAGAC 1 cut(s) 872
BstX2I RGATCY 2 cut(s) 292, 970
BstYI RGATCY 2 cut(s) 292, 970
Bsu15I ATCGAT 1 cut(s) 72
BsuRI GGCC 1 cut(s) 1093
BsuTUI ATCGAT 1 cut(s) 72
BtsCI GGATG 3 cut(s) 27, 578, 1010
BtsIMutI CAGTG 3 cut(s) 194, 623, 747
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 21
CciI TCATGA 1 cut(s) 894
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 866
Cfr13I GGNCC 1 cut(s) 1092
ClaI ATCGAT 1 cut(s) 72
CseI GACGC 1 cut(s) 866
Csp6I GTAC 5 cut(s) 410, 513, 616, 848, 1075
CviAII CATG 3 cut(s) 43, 282, 895
CviQI GTAC 5 cut(s) 410, 513, 616, 848, 1075
DdeI CTNAG 6 cut(s) 313, 422, 659, 750, 818, 1063
DpnI GATC 5 cut(s) 71, 75, 280, 294, 972
DpnII GATC 5 cut(s) 69, 73, 278, 292, 970
DraI TTTAAA 1 cut(s) 1102
Eam1104I CTCTTC 2 cut(s) 136, 154
EarI CTCTTC 2 cut(s) 136, 154
Eco32I GATATC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 773
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 381
EcoRV GATATC 1 cut(s) 61
FaeI CATG 3 cut(s) 46, 285, 898
FaqI GGGAC 2 cut(s) 685, 1095
FatI CATG 3 cut(s) 42, 281, 894
Fnu4HI GCNGC 2 cut(s) 247, 875
FokI GGATG 3 cut(s) 14, 585, 1017
Fsp4HI GCNGC 2 cut(s) 247, 875
FspBI CTAG 2 cut(s) 497, 756
GlaI GCGC 1 cut(s) 19
GluI GCNGC 2 cut(s) 247, 875
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 1 cut(s) 1093
HapII CCGG 2 cut(s) 867, 1119
HgaI GACGC 1 cut(s) 866
HhaI GCGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 46, 285, 898
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 7 cut(s) 390, 405, 453, 629, 647, 990, 1028
HpaII CCGG 2 cut(s) 867, 1119
HphI GGTGA 2 cut(s) 623, 1051
Hpy166II GTNNAC 2 cut(s) 113, 747
Hpy188I TCNGA 2 cut(s) 121, 297
Hpy188III TCNNGA 3 cut(s) 394, 457, 895
Hpy8I GTNNAC 2 cut(s) 113, 747
HpyAV CCTTC 1 cut(s) 561
HpyCH4III ACNGT 4 cut(s) 110, 198, 400, 419
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 194, 216, 327
HpyF3I CTNAG 6 cut(s) 313, 422, 659, 750, 818, 1063
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 3 cut(s) 46, 285, 898
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 5 cut(s) 69, 73, 278, 292, 970
LguI GCTCTTC 1 cut(s) 136
Lsp1109I GCAGC 1 cut(s) 861
LweI GCATC 2 cut(s) 181, 821
MaeI CTAG 2 cut(s) 497, 756
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 7 cut(s) 23, 32, 353, 372, 394, 490, 887
MalI GATC 5 cut(s) 71, 75, 280, 294, 972
MboI GATC 5 cut(s) 69, 73, 278, 292, 970
MflI RGATCY 2 cut(s) 292, 970
MluCI AATT 1 cut(s) 1103
MlyI GAGTC 3 cut(s) 399, 638, 641
MmeI TCCRAC 3 cut(s) 320, 901, 992
MnlI CCTC 6 cut(s) 93, 263, 329, 510, 745, 787
MseI TTAA 2 cut(s) 804, 1101
MslI CAYNNNNRTG 1 cut(s) 351
MspI CCGG 2 cut(s) 867, 1119
MspR9I CCNGG 2 cut(s) 383, 1120
MvaI CCWGG 1 cut(s) 383
NciI CCSGG 1 cut(s) 1120
NdeII GATC 5 cut(s) 69, 73, 278, 292, 970
NlaIII CATG 3 cut(s) 46, 285, 898
NmuCI GTSAC 5 cut(s) 23, 32, 353, 394, 887
PagI TCATGA 1 cut(s) 894
PciSI GCTCTTC 1 cut(s) 136
PfeI GAWTC 4 cut(s) 390, 453, 990, 1028
PflMI CCANNNNNTGG 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 1118
PkrI GCNGC 2 cut(s) 248, 876
PleI GAGTC 3 cut(s) 399, 637, 641
PpsI GAGTC 3 cut(s) 399, 637, 641
PshBI ATTAAT 1 cut(s) 804
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 1 cut(s) 381
PspPI GGNCC 1 cut(s) 1092
PsrI GAACNNNNNNTAC 2 cut(s) 496, 528
PstNI CAGNNNCTG 1 cut(s) 21
PsuI RGATCY 2 cut(s) 292, 970
RsaI GTAC 5 cut(s) 411, 514, 617, 849, 1076
RsaNI GTAC 5 cut(s) 410, 513, 616, 848, 1075
RseI CAYNNNNRTG 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 804, 1101
SatI GCNGC 2 cut(s) 247, 875
Sau3AI GATC 5 cut(s) 69, 73, 278, 292, 970
Sau96I GGNCC 1 cut(s) 1092
ScaI AGTACT 1 cut(s) 617
SchI GAGTC 3 cut(s) 399, 638, 641
ScrFI CCNGG 2 cut(s) 383, 1120
SfaNI GCATC 2 cut(s) 181, 821
SfcI CTRYAG 1 cut(s) 999
SmiI ATTTAAAT 1 cut(s) 1102
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
SpeI ACTAGT 1 cut(s) 496
Sse9I AATT 1 cut(s) 1103
SsiI CCGC 1 cut(s) 247
SspMI CTAG 2 cut(s) 497, 756
StyD4I CCNGG 2 cut(s) 381, 1118
SwaI ATTTAAAT 1 cut(s) 1102
TaaI ACNGT 4 cut(s) 110, 198, 400, 419
TaiI ACGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 72, 303
TasI AATT 1 cut(s) 1103
TatI WGTACW 2 cut(s) 615, 1074
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 4 cut(s) 390, 453, 990, 1028
Tru1I TTAA 2 cut(s) 804, 1101
Tru9I TTAA 2 cut(s) 804, 1101
TscAI CASTG 3 cut(s) 201, 630, 754
TseFI GTSAC 5 cut(s) 23, 32, 353, 394, 887
TseI GCWGC 1 cut(s) 874
Tsp45I GTSAC 5 cut(s) 23, 32, 353, 394, 887
TspDTI ATGAA 5 cut(s) 126, 783, 883, 911, 963
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 3 cut(s) 201, 630, 754
Van91I CCANNNNNTGG 1 cut(s) 339
VspI ATTAAT 1 cut(s) 804
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 1 cut(s) 1103
XspI CTAG 2 cut(s) 497, 756
ZrmI AGTACT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.