Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001490

Physical Location & Seq

Genomic Coordinates Forward (+)

15328271 .. 15329791

Gene Structure 1521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAAGAATCCGACACTCTTTGCTCCAAAAAGTCCACACTTTTTCCAGCCTATTCTTCCCGGTTTCAAGAGCCACATCAAAATCCCTGTGAAGTTCTTCTCCAAGCATATAGAGGGAAAACACGAGGGAAATACTGTCTATTTGAGATCATATCCTTCGAGGAGAACGTGGAAAGTGAAGATGGAGGGCCATAAACTCACTGAAGGTTGGAAAGAGTTCGTGGAGGCACATGATCTTCGAGTCGGTGACTTCGTCGTCTTCAAACACAAAGGAGACATGTTGTTCCATGTGACTGCTATAGGACCCAGTTGCTGTGAAGTCCAATACGCACCATCTCGTAGCCACGACAGAAACGAAGAGAGTGATGAAATTGGGGAATCTTCAAGAAATGAGAAAATTATTGAGGAGAATGTGAAAACAGAACCTGATCAGTTTTCACCAGATCTAACATGTTTTAGCCAATCTGTGACCGCTTCAAACCTAACGAGAGATTTAGTGGGTATTCCCAGAGATTTCGCAAAGCGATATGGTTTGAACATAGGTAGGCATGAGATAGTTTTGATGGACGAAGAAGGAAATACATGGGAATCAGAAGTTAAAAGTTACAAGTCTGGTCGGGTTTTTATAGCTGGAGGTTGGACAAGTCTCTGCACTGCAAATAAATTAGAAGTTGGAGATTCTTGTACATTTAAACTGCTCCGCAACCCGAAAATTCCCGTGTTTCGGCTCTGCAGCCGCCCAAAGGCTGGAGCAGAGGCTCGGCCACACAAGAGATCTCGAGTCCAAAGTAGCAGCGGGGGGAGTAGACAGAAGCATGACGTGAGGCAGAAGTTAGATGAAGAAGGAGGGCCATCTCGTTGCACTCGGTCATCTAACAAGGCTACTGGTGATCAAGAAAAGTTGCAGCAAACGCAATCTTGCTTTATCTTTGATCATGTGGCTAAGGTGAAACAGAGCGTTGAAGATACTTTAAATAGTATTAGACGGTTCCGGGCTAAACTCGAGACAAAGGAACATAATTTGGAAGCTTTGTTACAGGAAACGAAAACTAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

352

Amino Acids

40.07

Weight (kDa)

9.26

Isoelectric Point (pI)

65.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	24 - 95	5.9e-15	B3 DNA binding domain
B3	PF02362	152 - 246	3.3e-24	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT2G12170 AT2G13985 AT2G24645 AT2G24645 AT2G24645 AT2G24645 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24681 AT2G24681 AT2G24690 AT2G24690 AT2G24696 AT2G24700 AT4G00260 AT4G31610 AT4G31610 AT4G31615 AT4G31620 AT4G31620 AT4G31630 AT4G31640 AT4G31650 AT4G31650 AT4G31660 AT4G31680 AT4G31680 AT4G31685 AT4G31690 AT4G32970 AT5G32460

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT2G12170 AT2G13985 AT2G24645 AT2G24645 AT2G24645 AT2G24645 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24681 AT2G24681 AT2G24690 AT2G24690 AT2G24696 AT2G24700 AT4G00260 AT4G31610 AT4G31610 AT4G31615 AT4G31620 AT4G31620 AT4G31630 AT4G31640 AT4G31650 AT4G31650 AT4G31660 AT4G31680 AT4G31680 AT4G31685 AT4G31690 AT4G32970 AT5G32460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	746
AccI	GTMKAC	1 cut(s)	805
AciI	CCGC	4 cut(s)	471, 700, 736, 795
AcoI	YGGCCR	1 cut(s)	761
AcsI	RAATTY	1 cut(s)	711
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	685
AfiI	CCNNNNNNNGG	3 cut(s)	723, 742, 746
AflIII	ACRYGT	2 cut(s)	276, 449
AgsI	TTSAA	6 cut(s)	67, 262, 384, 477, 535, 962
AjiI	CACGTC	1 cut(s)	820
AluBI	AGCT	2 cut(s)	629, 1028
AluI	AGCT	2 cut(s)	629, 1028
Alw26I	GTCTC	3 cut(s)	267, 650, 998
AlwNI	CAGNNNCTG	2 cut(s)	312, 425
Ama87I	CYCGRG	2 cut(s)	777, 1001
AoxI	GGCC	3 cut(s)	187, 761, 848
ApeKI	GCWGC	3 cut(s)	732, 792, 904
ApoI	RAATTY	1 cut(s)	711
Asp700I	GAANNNNTTC	2 cut(s)	95, 215
AspS9I	GGNCC	3 cut(s)	187, 302, 848
AsuC2I	CCSGG	2 cut(s)	60, 992
AsuHPI	GGTGA	4 cut(s)	257, 429, 899, 958
AvaI	CYCGRG	2 cut(s)	777, 1001
AvaII	GGWCC	1 cut(s)	302
BarI	GAAGNNNNNNTAC	2 cut(s)	1017, 1049
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	744, 804, 916
BccI	CCATC	4 cut(s)	175, 340, 556, 859
BclI	TGATCA	3 cut(s)	427, 889, 931
BcnI	CCSGG	2 cut(s)	60, 992
BcoDI	GTCTC	3 cut(s)	267, 650, 998
BfmI	CTRYAG	2 cut(s)	297, 730
BglII	AGATCT	2 cut(s)	442, 773
BisI	GCNGC	4 cut(s)	733, 736, 793, 905
BlsI	GCNGC	4 cut(s)	734, 737, 794, 906
Bme1390I	CCNGG	2 cut(s)	60, 992
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	2 cut(s)	777, 1001
BmgBI	CACGTC	1 cut(s)	820
BmgT120I	GGNCC	3 cut(s)	187, 302, 848
BmiI	GGNNCC	2 cut(s)	304, 989
BmrFI	CCNGG	2 cut(s)	60, 992
BmrI	ACTGGG	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	2 cut(s)	651, 768
Bpu10I	CCTNAGC	1 cut(s)	942
BpuMI	CCSGG	2 cut(s)	60, 992
Bsc4I	CCNNNNNNNGG	3 cut(s)	723, 742, 746
Bse1I	ACTGG	2 cut(s)	306, 889
BseLI	CCNNNNNNNGG	3 cut(s)	723, 742, 746
BseNI	ACTGG	2 cut(s)	306, 889
BseRI	GAGGAG	2 cut(s)	175, 419
BseXI	GCAGC	3 cut(s)	744, 804, 916
BsgI	GTGCAG	1 cut(s)	634
BshFI	GGCC	3 cut(s)	189, 763, 850
BsiHKCI	CYCGRG	2 cut(s)	777, 1001
BsiSI	CCGG	2 cut(s)	60, 991
BslI	CCNNNNNNNGG	3 cut(s)	723, 742, 746
BsmAI	GTCTC	3 cut(s)	267, 650, 998
BsnI	GGCC	3 cut(s)	189, 763, 850
BsoBI	CYCGRG	2 cut(s)	777, 1001
Bsp1407I	TGTACA	1 cut(s)	683
Bsp143I	GATC	7 cut(s)	146, 232, 427, 442, 773, 889, 931
BspACI	CCGC	4 cut(s)	471, 700, 736, 795
BspANI	GGCC	3 cut(s)	189, 763, 850
BspLI	GGNNCC	2 cut(s)	304, 989
BspMAI	CTGCAG	1 cut(s)	734
BsrGI	TGTACA	1 cut(s)	683
BsrI	ACTGG	2 cut(s)	306, 889
BssMI	GATC	7 cut(s)	146, 232, 427, 442, 773, 889, 931
BssSI	CACGAG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	136, 987
Bst6I	CTCTTC	1 cut(s)	351
BstAUI	TGTACA	1 cut(s)	683
BstDEI	CTNAG	2 cut(s)	942, 1050
BstKTI	GATC	7 cut(s)	149, 235, 430, 445, 776, 892, 934
BstMAI	GTCTC	3 cut(s)	267, 650, 998
BstMBI	GATC	7 cut(s)	146, 232, 427, 442, 773, 889, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	910
BstNSI	RCATGY	2 cut(s)	280, 453
BstSCI	CCNGG	2 cut(s)	58, 990
BstSFI	CTRYAG	2 cut(s)	297, 730
BstV1I	GCAGC	3 cut(s)	744, 804, 916
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	442, 773
BstYI	RGATCY	2 cut(s)	442, 773
BsuRI	GGCC	3 cut(s)	189, 763, 850
BtrI	CACGTC	1 cut(s)	820
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	2 cut(s)	198, 651
CaiI	CAGNNNCTG	2 cut(s)	312, 425
Cfr13I	GGNCC	3 cut(s)	187, 302, 848
Csp6I	GTAC	1 cut(s)	684
CviAII	CATG	8 cut(s)	230, 277, 287, 450, 548, 582, 815, 935
CviQI	GTAC	1 cut(s)	684
DdeI	CTNAG	2 cut(s)	942, 1050
DpnI	GATC	7 cut(s)	148, 234, 429, 444, 775, 891, 933
DpnII	GATC	7 cut(s)	146, 232, 427, 442, 773, 889, 931
DraI	TTTAAA	2 cut(s)	691, 972
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	761
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	222
Eco88I	CYCGRG	2 cut(s)	777, 1001
EcoO109I	RGGNCCY	1 cut(s)	302
FaeI	CATG	8 cut(s)	233, 280, 290, 453, 551, 585, 818, 938
FatI	CATG	8 cut(s)	229, 276, 286, 449, 547, 581, 814, 934
FauI	CCCGC	1 cut(s)	788
FbaI	TGATCA	3 cut(s)	427, 889, 931
FblI	GTMKAC	1 cut(s)	805
Fnu4HI	GCNGC	4 cut(s)	733, 736, 793, 905
Fsp4HI	GCNGC	4 cut(s)	733, 736, 793, 905
GluI	GCNGC	4 cut(s)	733, 736, 793, 905
GsuI	CTGGAG	2 cut(s)	651, 768
HaeIII	GGCC	3 cut(s)	189, 763, 850
HapII	CCGG	2 cut(s)	60, 991
Hin1II	CATG	8 cut(s)	233, 280, 290, 453, 551, 585, 818, 938
HindIII	AAGCTT	1 cut(s)	1026
HinfI	GANTC	6 cut(s)	7, 240, 377, 587, 677, 780
HpaII	CCGG	2 cut(s)	60, 991
HphI	GGTGA	4 cut(s)	257, 429, 899, 958
Hpy166II	GTNNAC	2 cut(s)	35, 806
Hpy188I	TCNGA	2 cut(s)	12, 592
Hpy188III	TCNNGA	5 cut(s)	67, 384, 777, 893, 1003
Hpy8I	GTNNAC	2 cut(s)	35, 806
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	4 cut(s)	165, 197, 566, 836
HpyCH4III	ACNGT	2 cut(s)	136, 987
HpyCH4IV	ACGT	2 cut(s)	167, 819
HpyCH4V	TGCA	5 cut(s)	651, 656, 732, 861, 904
HpyF10VI	GCNNNNNNNGC	1 cut(s)	910
HpyF3I	CTNAG	2 cut(s)	942, 1050
HpySE526I	ACGT	2 cut(s)	167, 819
Hsp92II	CATG	8 cut(s)	233, 280, 290, 453, 551, 585, 818, 938
Ksp22I	TGATCA	3 cut(s)	427, 889, 931
Kzo9I	GATC	7 cut(s)	146, 232, 427, 442, 773, 889, 931
LmnI	GCTCC	3 cut(s)	28, 702, 749
Lsp1109I	GCAGC	3 cut(s)	744, 804, 916
MaeII	ACGT	2 cut(s)	167, 819
MaeIII	GTNAC	5 cut(s)	245, 289, 466, 602, 1032
MalI	GATC	7 cut(s)	148, 234, 429, 444, 775, 891, 933
MboI	GATC	7 cut(s)	146, 232, 427, 442, 773, 889, 931
MflI	RGATCY	2 cut(s)	442, 773
MluCI	AATT	5 cut(s)	369, 396, 662, 711, 1018
MlyI	GAGTC	2 cut(s)	249, 789
MmeI	TCCRAC	4 cut(s)	35, 188, 617, 652
MroXI	GAANNNNTTC	2 cut(s)	95, 215
MseI	TTAA	3 cut(s)	597, 690, 971
MspA1I	CMGCKG	1 cut(s)	795
MspI	CCGG	2 cut(s)	60, 991
MspR9I	CCNGG	2 cut(s)	60, 992
MwoI	GCNNNNNNNGC	1 cut(s)	910
NciI	CCSGG	2 cut(s)	60, 992
NdeII	GATC	7 cut(s)	146, 232, 427, 442, 773, 889, 931
NlaIII	CATG	8 cut(s)	233, 280, 290, 453, 551, 585, 818, 938
NlaIV	GGNNCC	2 cut(s)	304, 989
NmeAIII	GCCGAG	1 cut(s)	739
NmuCI	GTSAC	3 cut(s)	245, 289, 466
NspI	RCATGY	2 cut(s)	280, 453
PaeR7I	CTCGAG	2 cut(s)	777, 1001
PciI	ACATGT	2 cut(s)	276, 449
PcsI	WCGNNNNNNNCGW	3 cut(s)	164, 249, 351
PdmI	GAANNNNTTC	2 cut(s)	95, 215
PfeI	GAWTC	4 cut(s)	7, 377, 587, 677
PflFI	GACNNNGTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	746
PkrI	GCNGC	4 cut(s)	734, 737, 794, 906
PleI	GAGTC	2 cut(s)	248, 788
PpsI	GAGTC	2 cut(s)	248, 788
PpuMI	RGGWCCY	1 cut(s)	302
PscI	ACATGT	2 cut(s)	276, 449
Psp5II	RGGWCCY	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	304, 989
PspPI	GGNCC	3 cut(s)	187, 302, 848
PspPPI	RGGWCCY	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	734
PstNI	CAGNNNCTG	2 cut(s)	312, 425
PsuI	RGATCY	2 cut(s)	442, 773
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	685
RsaNI	GTAC	1 cut(s)	684
SaqAI	TTAA	3 cut(s)	597, 690, 971
SatI	GCNGC	4 cut(s)	733, 736, 793, 905
Sau3AI	GATC	7 cut(s)	146, 232, 427, 442, 773, 889, 931
Sau96I	GGNCC	3 cut(s)	187, 302, 848
SchI	GAGTC	2 cut(s)	249, 789
ScrFI	CCNGG	2 cut(s)	60, 992
SfcI	CTRYAG	2 cut(s)	297, 730
Sfr274I	CTCGAG	2 cut(s)	777, 1001
SinI	GGWCC	1 cut(s)	302
SlaI	CTCGAG	2 cut(s)	777, 1001
SmlI	CTYRAG	2 cut(s)	777, 1001
SmoI	CTYRAG	2 cut(s)	777, 1001
Sse9I	AATT	5 cut(s)	369, 396, 662, 711, 1018
SsiI	CCGC	4 cut(s)	471, 700, 736, 795
StyD4I	CCNGG	2 cut(s)	58, 990
TaaI	ACNGT	2 cut(s)	136, 987
TaiI	ACGT	2 cut(s)	170, 822
TaqI	TCGA	4 cut(s)	158, 238, 778, 1002
TaqII	GACCGA	1 cut(s)	855
TasI	AATT	5 cut(s)	369, 396, 662, 711, 1018
TatI	WGTACW	1 cut(s)	683
TauI	GCSGC	1 cut(s)	738
TfiI	GAWTC	4 cut(s)	7, 377, 587, 677
Tru1I	TTAA	3 cut(s)	597, 690, 971
Tru9I	TTAA	3 cut(s)	597, 690, 971
TscAI	CASTG	2 cut(s)	205, 658
TseFI	GTSAC	3 cut(s)	245, 289, 466
TseI	GCWGC	3 cut(s)	732, 792, 904
Tsp45I	GTSAC	3 cut(s)	245, 289, 466
TspDTI	ATGAA	3 cut(s)	17, 381, 852
TspRI	CASTG	2 cut(s)	205, 658
Tth111I	GACNNNGTC	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	711
XceI	RCATGY	2 cut(s)	280, 453
XhoI	CTCGAG	2 cut(s)	777, 1001
XmiI	GTMKAC	1 cut(s)	805
XmnI	GAANNNNTTC	2 cut(s)	95, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.