AT2G24681

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001490
Physical Location & Seq
Reverse (-)
10497147 .. 10498462
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24681.1

Sequence Viewer

Length: 861 bp
ATGGCTTGGAACCTGGCGATAATAACTTTGGTTGGCAAAGATGGTACAAAGTTGGAGGCAACTCTTCGACGGGAAAACAGAGGATTGATGTGTCTCGGAAATGGCTGGAAAGATTTATCTATATCCAACGGCTTGAAGAGTGGCAAGTCGTTCACGCTGGAGCTAATTTTGGAGAATGGAACTCCTATGCTCAGTTTGGTGAGTACACAGTCCACAAGTCATAAAAGCCAGAAAAGAGAGTGCTCAAAACATAGCGAGAAAGAGTCGATCTCTGCAGTACCTAGCAAAGGAAAAAAGAACAGGAAAGCCAGGAGCAACAGAGAGGAGAGGAGAGACTCGTCTTCAGCAATCCAAAATCGATTTGTGACATTCACACCAGAAGATATCAGAGACTGTATACTAATTCTTCCAAGCCAATTCATCAAAGCTAATGGCATCAACAACCTCGGGGAGATAACTTTGTTGGGTCAAAACAGAATGAAGTGGTTTGCATATCTACTGTCAATGTCAAAAGATGGAAGTTTGGCTCTGGGATCTGGTTGGAAGGGCATCTGTGAGGCTAATGGCGTTAATACAGGGGAGGCATTCACGTTGGAATACATTGATGAACAAGAAACAGCTCATGGACGTGCACAAGTTTGTTTCTATGGTGTATTCCCAGGCAAATCTGTCAGAAGTTTTGCTTCTCTCCGGTCTAAGTGGAATGATCTATTTTATGACTTCCTCAGGGAACAAAATCTGAGAGTGAATCCAATCATTGGTGTTGCCATATGTCTGTGTAAGCATCATTACTGTAATTACAACTCTTGTTCCTTGTTTAAACCTAGGCCTAAACTTAGTCAAAAAAATCTTAATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

286

Amino Acids

32.04

Weight (kDa)

9.51

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 7 - 68 5.6e-07 B3 DNA binding domain
B3 PF02362 123 - 206 6.3e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 758
AccI GTMKAC 1 cut(s) 397
AclWI GGATC 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 3 cut(s) 46, 205, 279
AfiI CCNNNNNNNGG 2 cut(s) 287, 758
AgsI TTSAA 1 cut(s) 136
AjiI CACGTC 1 cut(s) 629
AjnI CCWGG 3 cut(s) 12, 308, 658
AluBI AGCT 3 cut(s) 163, 428, 620
AluI AGCT 3 cut(s) 163, 428, 620
Alw21I GWGCWC 2 cut(s) 245, 634
Alw26I GTCTC 3 cut(s) 98, 327, 384
Alw44I GTGCAC 1 cut(s) 630
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 393
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 1 cut(s) 827
ApaLI GTGCAC 1 cut(s) 630
AspA2I CCTAGG 1 cut(s) 824
AsuHPI GGTGA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 446
AvrII CCTAGG 1 cut(s) 824
AxyI CCTNAGG 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 634
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 2 cut(s) 245, 634
BccI CCATC 2 cut(s) 35, 509
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 3 cut(s) 14, 310, 660
BcoDI GTCTC 3 cut(s) 98, 327, 384
BfaI CTAG 2 cut(s) 282, 825
BfmI CTRYAG 1 cut(s) 273
BlnI CCTAGG 1 cut(s) 824
Bme1390I CCNGG 3 cut(s) 14, 310, 660
BmeT110I CYCGRG 1 cut(s) 446
BmgBI CACGTC 1 cut(s) 629
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 3 cut(s) 14, 310, 660
BmsI GCATC 3 cut(s) 444, 558, 793
BpiI GAAGAC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpmI CTGGAG 1 cut(s) 179
Bsa29I ATCGAT 1 cut(s) 358
BsaJI CCNNGG 3 cut(s) 445, 658, 824
BsaWI WCCGGW 1 cut(s) 690
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 758
Bse21I CCTNAGG 1 cut(s) 725
BseBI CCWGG 3 cut(s) 14, 310, 660
BseCI ATCGAT 1 cut(s) 358
BseDI CCNNGG 3 cut(s) 445, 658, 824
BseLI CCNNNNNNNGG 2 cut(s) 287, 758
BseMII CTCAG 3 cut(s) 205, 731, 739
BseRI GAGGAG 2 cut(s) 338, 343
BseSI GKGCMC 1 cut(s) 634
BshFI GGCC 1 cut(s) 829
BshVI ATCGAT 1 cut(s) 358
BsiHKAI GWGCWC 2 cut(s) 245, 634
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 1 cut(s) 691
BslI CCNNNNNNNGG 2 cut(s) 287, 758
BsmAI GTCTC 3 cut(s) 98, 327, 384
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 1 cut(s) 829
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 245, 634
Bsp143I GATC 3 cut(s) 267, 533, 706
BspANI GGCC 1 cut(s) 829
BspCNI CTCAG 3 cut(s) 204, 732, 738
BspDI ATCGAT 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 11
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 445, 658, 824
BssMI GATC 3 cut(s) 267, 533, 706
BssNAI GTATAC 1 cut(s) 398
BssT1I CCWWGG 1 cut(s) 824
Bst1107I GTATAC 1 cut(s) 398
Bst2UI CCWGG 3 cut(s) 14, 310, 660
Bst4CI ACNGT 4 cut(s) 210, 395, 501, 794
Bst6I CTCTTC 2 cut(s) 69, 131
BstDEI CTNAG 5 cut(s) 191, 696, 725, 740, 836
BstENI CCTNNNNNAGG 1 cut(s) 285
BstKTI GATC 3 cut(s) 270, 536, 709
BstMAI GTCTC 3 cut(s) 98, 327, 384
BstMBI GATC 3 cut(s) 267, 533, 706
BstNI CCWGG 3 cut(s) 14, 310, 660
BstSCI CCNGG 3 cut(s) 12, 308, 658
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 634
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BstZ17I GTATAC 1 cut(s) 398
Bsu15I ATCGAT 1 cut(s) 358
Bsu36I CCTNAGG 1 cut(s) 725
BsuRI GGCC 1 cut(s) 829
BsuTUI ATCGAT 1 cut(s) 358
BtrI CACGTC 1 cut(s) 629
CaiI CAGNNNCTG 1 cut(s) 393
ClaI ATCGAT 1 cut(s) 358
Csp6I GTAC 3 cut(s) 45, 204, 278
CviAII CATG 1 cut(s) 623
CviQI GTAC 3 cut(s) 45, 204, 278
DdeI CTNAG 5 cut(s) 191, 696, 725, 740, 836
DpnI GATC 3 cut(s) 269, 535, 708
DpnII GATC 3 cut(s) 267, 533, 706
DraI TTTAAA 1 cut(s) 820
Eam1104I CTCTTC 2 cut(s) 69, 131
EarI CTCTTC 2 cut(s) 69, 131
Eco130I CCWWGG 1 cut(s) 824
Eco147I AGGCCT 1 cut(s) 829
Eco32I GATATC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 725
Eco88I CYCGRG 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoRII CCWGG 3 cut(s) 12, 308, 658
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 824
ErhI CCWWGG 1 cut(s) 824
FaeI CATG 1 cut(s) 626
FalI AAGNNNNNCTT 2 cut(s) 667, 699
FatI CATG 1 cut(s) 622
FauNDI CATATG 1 cut(s) 770
FblI GTMKAC 1 cut(s) 397
FspBI CTAG 2 cut(s) 282, 825
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 829
HapII CCGG 1 cut(s) 691
Hin1II CATG 1 cut(s) 626
HinfI GANTC 3 cut(s) 263, 335, 748
HpaII CCGG 1 cut(s) 691
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 5 cut(s) 153, 206, 213, 398, 632
Hpy188I TCNGA 4 cut(s) 98, 389, 674, 741
Hpy8I GTNNAC 5 cut(s) 153, 206, 213, 398, 632
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 4 cut(s) 210, 395, 501, 794
HpyCH4IV ACGT 2 cut(s) 590, 628
HpyCH4V TGCA 3 cut(s) 275, 491, 632
HpyF3I CTNAG 5 cut(s) 191, 696, 725, 740, 836
HpySE526I ACGT 2 cut(s) 590, 628
Hsp92II CATG 1 cut(s) 626
Kzo9I GATC 3 cut(s) 267, 533, 706
LmnI GCTCC 2 cut(s) 160, 312
LweI GCATC 3 cut(s) 444, 558, 793
MaeI CTAG 2 cut(s) 282, 825
MaeII ACGT 2 cut(s) 590, 628
MaeIII GTNAC 1 cut(s) 364
MalI GATC 3 cut(s) 269, 535, 708
MboI GATC 3 cut(s) 267, 533, 706
MboII GAAGA 5 cut(s) 56, 148, 333, 392, 398
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 2 cut(s) 245, 634
MluCI AATT 5 cut(s) 165, 402, 416, 796, 853
MlyI GAGTC 2 cut(s) 272, 329
MmeI TCCRAC 4 cut(s) 33, 150, 521, 573
MnlI CCTC 8 cut(s) 49, 74, 316, 321, 455, 550, 574, 734
MseI TTAA 3 cut(s) 570, 819, 852
MslI CAYNNNNRTG 1 cut(s) 627
MspI CCGG 1 cut(s) 691
MspR9I CCNGG 3 cut(s) 14, 310, 660
MssI GTTTAAAC 1 cut(s) 820
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 3 cut(s) 14, 310, 660
NdeI CATATG 1 cut(s) 770
NdeII GATC 3 cut(s) 267, 533, 706
NlaIII CATG 1 cut(s) 626
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 364
PceI AGGCCT 1 cut(s) 829
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 1 cut(s) 748
PflMI CCANNNNNTGG 1 cut(s) 758
PleI GAGTC 2 cut(s) 271, 329
PmeI GTTTAAAC 1 cut(s) 820
PpsI GAGTC 2 cut(s) 271, 329
Psp6I CCWGG 3 cut(s) 12, 308, 658
PspGI CCWGG 3 cut(s) 12, 308, 658
PspN4I GGNNCC 1 cut(s) 11
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 393
PsuI RGATCY 1 cut(s) 533
RsaI GTAC 3 cut(s) 46, 205, 279
RsaNI GTAC 3 cut(s) 45, 204, 278
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 3 cut(s) 570, 819, 852
Sau3AI GATC 3 cut(s) 267, 533, 706
SchI GAGTC 2 cut(s) 272, 329
ScrFI CCNGG 3 cut(s) 14, 310, 660
SduI GDGCHC 2 cut(s) 245, 634
SetI ASST 9 cut(s) 15, 165, 283, 430, 447, 593, 622, 631, 826
SfaNI GCATC 3 cut(s) 444, 558, 793
SfcI CTRYAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 627
Sse9I AATT 5 cut(s) 165, 402, 416, 796, 853
SseBI AGGCCT 1 cut(s) 829
SspMI CTAG 2 cut(s) 282, 825
StuI AGGCCT 1 cut(s) 829
StyD4I CCNGG 3 cut(s) 12, 308, 658
StyI CCWWGG 1 cut(s) 824
TaaI ACNGT 4 cut(s) 210, 395, 501, 794
TaiI ACGT 2 cut(s) 593, 631
TaqI TCGA 3 cut(s) 67, 266, 358
TasI AATT 5 cut(s) 165, 402, 416, 796, 853
TatI WGTACW 1 cut(s) 203
TfiI GAWTC 1 cut(s) 748
Tru1I TTAA 3 cut(s) 570, 819, 852
Tru9I TTAA 3 cut(s) 570, 819, 852
TseFI GTSAC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 3 cut(s) 409, 494, 621
Van91I CCANNNNNTGG 1 cut(s) 758
VneI GTGCAC 1 cut(s) 630
XagI CCTNNNNNAGG 1 cut(s) 285
XmaJI CCTAGG 1 cut(s) 824
XmiI GTMKAC 1 cut(s) 397
XspI CTAG 2 cut(s) 282, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.