AT2G12170

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001490
Physical Location & Seq
Reverse (-)
4890067 .. 4891424
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G12170.1

Sequence Viewer

Length: 249 bp
ATGGCTGAGAAGGAGAAGCGGGTACTCAGAGTTTCCCCGAGGAGAAAACTGTCTTCGACAAAGGCAACGGTGGAACTGGATAAACAGTACAAGTGTTGCTCCGACGGAAGATCTTATTTATGCCAAGAAACCACATATGGGAAGAATGAGCTTCAGAAGCTGAAAGATTTATGGATTTTGATAATGGCGAAGCAACATTTCTTCAAGCCTCTTCTTCCCGGATTCCACTGTCATTTGCCTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

82

Amino Acids

9.59

Weight (kDa)

9.58

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 2 cut(s) 24, 89
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 2 cut(s) 151, 160
AluI AGCT 2 cut(s) 151, 160
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 219
BglII AGATCT 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 1 cut(s) 110
BspACI CCGC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 1 cut(s) 110
Bst4CI ACNGT 4 cut(s) 51, 70, 87, 230
Bst6I CTCTTC 1 cut(s) 216
BstDEI CTNAG 2 cut(s) 6, 26
BstKTI GATC 1 cut(s) 113
BstMBI GATC 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 226
CaiI CAGNNNCTG 1 cut(s) 160
Csp6I GTAC 2 cut(s) 23, 88
CviJI RGCY 4 cut(s) 5, 151, 160, 208
CviKI_1 RGCY 4 cut(s) 5, 151, 160, 208
CviQI GTAC 2 cut(s) 23, 88
DdeI CTNAG 2 cut(s) 6, 26
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 37
FaiI YATR 4 cut(s) 121, 136, 138, 172
FauI CCCGC 1 cut(s) 12
FauNDI CATATG 1 cut(s) 136
HapII CCGG 1 cut(s) 219
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 219
Hpy188I TCNGA 3 cut(s) 29, 103, 156
Hpy188III TCNNGA 1 cut(s) 246
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 4, 249
HpyCH4III ACNGT 4 cut(s) 51, 70, 87, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 2 cut(s) 6, 26
Kzo9I GATC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 2 cut(s) 62, 232
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MboII GAAGA 7 cut(s) 45, 120, 154, 193, 203, 206, 234
MflI RGATCY 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 2 cut(s) 33, 219
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 136
NdeII GATC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 222
PfoI TCCNGGA 1 cut(s) 217
PstNI CAGNNNCTG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 110
RsaI GTAC 2 cut(s) 24, 89
RsaNI GTAC 2 cut(s) 23, 88
Sau3AI GATC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 219
SetI ASST 2 cut(s) 153, 162
SgeI CNNG 9 cut(s) 32, 49, 51, 89, 103, 137, 217, 230, 231
SsiI CCGC 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 217
TaaI ACNGT 4 cut(s) 51, 70, 87, 230
TaqI TCGA 1 cut(s) 56
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 1 cut(s) 222
TscAI CASTG 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.