AT2G24700

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
10512884 .. 10515411
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24700.1

Sequence Viewer

Length: 1668 bp
ATGGCTAATCCACTTCTCTATTCTCCGATCAACCCACAATTCTTCCAACCACTTCTTCCCGGTTTCACCAACCACCTGGACATTCCTGTGGCGTTCTTCTTGAAGTACTTAGTGGGAACTAACGTAGGAAAAACGGCTGAGCTCAGATCAGATGCATCGGAGATGACATGGAAAGTGAAGATAGACGGCCGGAGACTCTCTAATGGTTGGGAAGATTTCACAATCGCACATGATCTCCGAGTTGGTGACATTGTTGTTTTCAGACAAGAAGGAGAGTTAGTGTTCCATGTCACAGCTTTAGGACCAAGTTGCTGTGAGATTCAATACGGAGAAGATACCCTTGAAGAGGATAAAATTGAGAAACTTTGTGGTACGGAGAATGTTTCAAGTAAGAAAAAGAGTCTAAAGAGAGAAGCTGAGTCTGCACCAGACAATTCACTAGATTCTTGTTTTGTGGCCACTGTCACGGGTTCGAATCTAAAGCGCGATACATTGTATATTCCGAAAGAGTTTGCATTGTCAAATGGTCTGATGAACAAATATCAGATTGTGTTAATGAATGAAGAAGGAGAATCATGGAAGATAGACTTGAGACGCGAGGCATATAATTACGGCCGGTTTTACATGAGAAGAGGCTGGAGAAGTTTCTGTATTGCTAATGGGAAGAAACCTGGAGACGTTTTTGCATTCAAATTGGTCAAAAATGAAGAAACACCTATGATACAGTTGTTCCCTATGACCATTGAAGATTTAGACAAACTTCAGAGTCTTCCAAGACACAAGATTCGAAAAACAGAAGCAGCTCCTTCTTCACCGGACCTTTCTTCTTTTGTAGCCACTGTCACGGCTTCAAATCTAAGCCGAGATAGACTGTATCTTCCGAAGACGTTCATTATGTCAAATGGTTTGTTGAAGAAATTTCAGATGTGTCTAATGAATGAAGAGGGAGAATCATGGACGATAGATGTGAAACATGAGGCACATACAGGCCGGTTTTTAACGATAAGAGGTTGGAGAAGATTCTGTGTGGCTAATGGGAAGAAACCAGGAGACTTGCTCAAATTCAAATTAGTCCATAACGAAGAAACACCTGTGCTCCAGTTGTTACCCTTGAACAGTGAAGATCTACACAAACTTAATCCTAGCAATGACACAAGGCATGGACAGAGTTTAAAAGTTACCAAAAAAGAGTTTCTTGGCATGGAAGCCACAGAAAATGAGTTTCTTGGGGAAGAAGTTTACTGTAATGACTCCTTTAAAGCTAGCGAGAAAGATACTCTTCCTTTTGCTGAACCTATCAATGAAGATATAAGGCAAGGACAATGTTCACAAACTATTAAACAAGAATATGTTTCCACAGAAGAGAAAAACTCAACAAGCCAAAACCGATTTGTGACCTTAACACTTACACATTCAAGTAAACTTAATCTTCCGTTTGAATTCATGAAGCGGAATGGAATCAAAAAGGCGGGGAAGATAACGATGGTTGATAGATACGATGCAAAATGGCGTACTTCACTACTGATGGACAAGATCGGAACAATGAGTTTAGGAAGAGGTTCAAAAGGTTTCTGCGAGGTTAATGGTGTTGAGATGAATGAGTCGTTTATCTTGGAGTTGATTTGGGAAGACACAGTTCCTCTTCTTAAGTTTTGTTCCAAAGTTTGA

Protein Analysis

555

Amino Acids

63.26

Weight (kDa)

7.12

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 24 - 97 2.6e-07 B3 DNA binding domain
B3 PF02362 151 - 245 9.2e-21 B3 DNA binding domain
B3 PF02362 278 - 369 9.7e-20 B3 DNA binding domain
B3 PF02362 465 - 554 1.2e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 486, 597
AciI CCGC 2 cut(s) 1450, 1469
AcoI YGGCCR 3 cut(s) 187, 456, 613
AcsI RAATTY 3 cut(s) 917, 1061, 1439
AcuI CTGAAG 1 cut(s) 746
AfaI GTAC 3 cut(s) 107, 373, 1513
AfiI CCNNNNNNNGG 1 cut(s) 346
AflII CTTAAG 1 cut(s) 1646
AjnI CCWGG 3 cut(s) 75, 670, 1045
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 5 cut(s) 142, 296, 416, 803, 1262
AluI AGCT 5 cut(s) 142, 296, 416, 803, 1262
Alw21I GWGCWC 2 cut(s) 144, 1098
Alw26I GTCTC 4 cut(s) 187, 586, 669, 1044
AoxI GGCC 4 cut(s) 187, 456, 613, 988
ApeKI GCWGC 1 cut(s) 800
ApoI RAATTY 3 cut(s) 917, 1061, 1439
ArsI GACNNNNNNTTYG 2 cut(s) 768, 800
Asp700I GAANNNNTTC 2 cut(s) 887, 1558
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 302, 817
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 3 cut(s) 58, 257, 804
AsuII TTCGAA 2 cut(s) 473, 787
AsuNHI GCTAGC 1 cut(s) 1262
AvaII GGWCC 2 cut(s) 302, 817
BaeI ACNNNNGTAYC 2 cut(s) 713, 746
BalI TGGCCA 1 cut(s) 458
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 3 cut(s) 761, 890, 1635
Bbv12I GWGCWC 2 cut(s) 144, 1098
BbvI GCAGC 1 cut(s) 812
BccI CCATC 2 cut(s) 1477, 1519
BceAI ACGGC 4 cut(s) 150, 202, 628, 861
BciT130I CCWGG 3 cut(s) 77, 672, 1047
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 4 cut(s) 187, 586, 669, 1044
BfaI CTAG 3 cut(s) 440, 1143, 1263
BfrI CTTAAG 1 cut(s) 1646
BglII AGATCT 1 cut(s) 1123
BisI GCNGC 1 cut(s) 801
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 802
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 4 cut(s) 60, 77, 672, 1047
Bme18I GGWCC 2 cut(s) 302, 817
BmgT120I GGNCC 2 cut(s) 302, 817
BmrFI CCNGG 4 cut(s) 60, 77, 672, 1047
BmsI GCATC 3 cut(s) 142, 164, 1489
BmtI GCTAGC 1 cut(s) 1266
BpiI GAAGAC 3 cut(s) 761, 890, 1635
BplI GAGNNNNNCTC 4 cut(s) 1041, 1073, 1355, 1387
BpmI CTGGAG 3 cut(s) 658, 693, 1082
Bpu1102I GCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 2 cut(s) 473, 787
BpuEI CTTGAG 1 cut(s) 610
BpuMI CCSGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 6 cut(s) 219, 249, 264, 294, 1080, 1110
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse118I RCCGGY 2 cut(s) 615, 990
Bse1I ACTGG 1 cut(s) 1099
Bse3DI GCAATG 1 cut(s) 1153
BseBI CCWGG 3 cut(s) 77, 672, 1047
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 1153
BseMII CTCAG 3 cut(s) 129, 157, 408
BseNI ACTGG 1 cut(s) 1099
BseX3I CGGCCG 2 cut(s) 187, 613
BseXI GCAGC 1 cut(s) 812
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 2 cut(s) 486, 597
Bsh1285I CGRYCG 2 cut(s) 190, 616
BshFI GGCC 4 cut(s) 189, 458, 615, 990
BsiEI CGRYCG 2 cut(s) 190, 616
BsiHKAI GWGCWC 2 cut(s) 144, 1098
BsiSI CCGG 5 cut(s) 60, 190, 616, 815, 991
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 4 cut(s) 187, 586, 669, 1044
BsmBI CGTCTC 2 cut(s) 586, 669
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 4 cut(s) 189, 458, 615, 990
Bsp119I TTCGAA 2 cut(s) 473, 787
Bsp1286I GDGCHC 2 cut(s) 144, 1098
Bsp143I GATC 5 cut(s) 27, 146, 232, 1123, 1533
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 2 cut(s) 1450, 1469
BspANI GGCC 4 cut(s) 189, 458, 615, 990
BspCNI CTCAG 3 cut(s) 130, 156, 409
BspFNI CGCG 2 cut(s) 486, 597
BspHI TCATGA 1 cut(s) 1443
BspOI GCTAGC 1 cut(s) 1266
BspT104I TTCGAA 2 cut(s) 473, 787
BspTI CTTAAG 1 cut(s) 1646
BsrDI GCAATG 1 cut(s) 1153
BsrFI RCCGGY 2 cut(s) 615, 990
BsrI ACTGG 1 cut(s) 1099
BssAI RCCGGY 2 cut(s) 615, 990
BssMI GATC 5 cut(s) 27, 146, 232, 1123, 1533
Bst2UI CCWGG 3 cut(s) 77, 672, 1047
Bst4CI ACNGT 7 cut(s) 463, 726, 841, 873, 1118, 1244, 1636
Bst6I CTCTTC 7 cut(s) 339, 625, 936, 1284, 1356, 1549, 1647
BstAFI CTTAAG 1 cut(s) 1646
BstBI TTCGAA 2 cut(s) 473, 787
BstC8I GCNNGC 1 cut(s) 1264
BstDEI CTNAG 5 cut(s) 109, 138, 143, 417, 857
BstENI CCTNNNNNAGG 1 cut(s) 344
BstFNI CGCG 2 cut(s) 486, 597
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 5 cut(s) 30, 149, 235, 1126, 1536
BstMAI GTCTC 4 cut(s) 187, 586, 669, 1044
BstMBI GATC 5 cut(s) 27, 146, 232, 1123, 1533
BstMCI CGRYCG 2 cut(s) 190, 616
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 3 cut(s) 77, 672, 1047
BstSCI CCNGG 4 cut(s) 58, 75, 670, 1045
BstUI CGCG 2 cut(s) 486, 597
BstV1I GCAGC 1 cut(s) 812
BstV2I GAAGAC 3 cut(s) 761, 890, 1635
BstX2I RGATCY 1 cut(s) 1123
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 1 cut(s) 1123
BstZI CGGCCG 2 cut(s) 187, 613
BsuRI GGCC 4 cut(s) 189, 458, 615, 990
BtsIMutI CAGTG 3 cut(s) 459, 837, 1123
Cac8I GCNNGC 1 cut(s) 1264
CciI TCATGA 1 cut(s) 1443
CfoI GCGC 1 cut(s) 486
Cfr10I RCCGGY 2 cut(s) 615, 990
Cfr13I GGNCC 2 cut(s) 302, 817
CseI GACGC 1 cut(s) 603
Csp6I GTAC 3 cut(s) 106, 372, 1512
CviQI GTAC 3 cut(s) 106, 372, 1512
DdeI CTNAG 5 cut(s) 109, 138, 143, 417, 857
DpnI GATC 5 cut(s) 29, 148, 234, 1125, 1535
DpnII GATC 5 cut(s) 27, 146, 232, 1123, 1533
DraI TTTAAA 2 cut(s) 1173, 1258
EaeI YGGCCR 3 cut(s) 187, 456, 613
EagI CGGCCG 2 cut(s) 187, 613
Eam1104I CTCTTC 7 cut(s) 339, 625, 936, 1284, 1356, 1549, 1647
EarI CTCTTC 7 cut(s) 339, 625, 936, 1284, 1356, 1549, 1647
Ecl136II GAGCTC 1 cut(s) 142
EclXI CGGCCG 2 cut(s) 187, 613
Eco24I GRGCYC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 302, 817
Eco52I CGGCCG 2 cut(s) 187, 613
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 746
EcoICRI GAGCTC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 1439
EcoRII CCWGG 3 cut(s) 75, 670, 1045
EcoT22I ATGCAT 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 144
Esp3I CGTCTC 2 cut(s) 586, 669
FalI AAGNNNNNCTT 8 cut(s) 324, 356, 572, 604, 1179, 1211, 1263, 1295
FauI CCCGC 1 cut(s) 1462
Fnu4HI GCNGC 1 cut(s) 801
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 801
FspBI CTAG 3 cut(s) 440, 1143, 1263
GlaI GCGC 1 cut(s) 485
GluI GCNGC 1 cut(s) 801
GsuI CTGGAG 3 cut(s) 658, 693, 1082
HaeIII GGCC 4 cut(s) 189, 458, 615, 990
HapII CCGG 5 cut(s) 60, 190, 616, 815, 991
HgaI GACGC 1 cut(s) 603
HhaI GCGC 1 cut(s) 486
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HpaII CCGG 5 cut(s) 60, 190, 616, 815, 991
HphI GGTGA 3 cut(s) 58, 257, 804
Hpy166II GTNNAC 3 cut(s) 1240, 1328, 1421
Hpy188III TCNNGA 2 cut(s) 100, 1444
Hpy8I GTNNAC 3 cut(s) 1240, 1328, 1421
HpyAV CCTTC 3 cut(s) 263, 560, 816
HpyCH4III ACNGT 7 cut(s) 463, 726, 841, 873, 1118, 1244, 1636
HpyCH4IV ACGT 3 cut(s) 123, 678, 887
HpyCH4V TGCA 5 cut(s) 155, 425, 515, 686, 1502
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 5 cut(s) 109, 138, 143, 417, 857
HpySE526I ACGT 3 cut(s) 123, 678, 887
HspAI GCGC 1 cut(s) 484
Kzo9I GATC 5 cut(s) 27, 146, 232, 1123, 1533
LmnI GCTCC 2 cut(s) 808, 1101
Lsp1109I GCAGC 1 cut(s) 812
LweI GCATC 3 cut(s) 142, 164, 1489
MaeI CTAG 3 cut(s) 440, 1143, 1263
MaeII ACGT 3 cut(s) 123, 678, 887
MaeIII GTNAC 7 cut(s) 245, 289, 463, 841, 1104, 1177, 1393
MalI GATC 5 cut(s) 29, 148, 234, 1125, 1535
MboI GATC 5 cut(s) 27, 146, 232, 1123, 1533
MflI RGATCY 1 cut(s) 1123
MhlI GDGCHC 2 cut(s) 144, 1098
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 9 cut(s) 38, 354, 433, 607, 692, 917, 1061, 1067, 1439
MluNI TGGCCA 1 cut(s) 458
MlyI GAGTC 6 cut(s) 189, 409, 428, 775, 1244, 1610
MmeI TCCRAC 2 cut(s) 70, 992
MnlI CCTC 9 cut(s) 340, 592, 626, 937, 970, 1001, 1550, 1570, 1650
Mox20I TGGCCA 1 cut(s) 458
Mph1103I ATGCAT 1 cut(s) 157
MroXI GAANNNNTTC 2 cut(s) 887, 1558
MscI TGGCCA 1 cut(s) 458
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 458
MspCI CTTAAG 1 cut(s) 1646
MspI CCGG 5 cut(s) 60, 190, 616, 815, 991
MspR9I CCNGG 4 cut(s) 60, 77, 672, 1047
Mva1269I GAATGC 1 cut(s) 686
MvaI CCWGG 3 cut(s) 77, 672, 1047
MvnI CGCG 2 cut(s) 486, 597
MwoI GCNNNNNNNGC 1 cut(s) 422
NciI CCSGG 1 cut(s) 60
NdeII GATC 5 cut(s) 27, 146, 232, 1123, 1533
NheI GCTAGC 1 cut(s) 1262
NmeAIII GCCGAG 1 cut(s) 887
NmuCI GTSAC 5 cut(s) 245, 289, 463, 841, 1393
NsiI ATGCAT 1 cut(s) 157
NspV TTCGAA 2 cut(s) 473, 787
PagI TCATGA 1 cut(s) 1443
PctI GAATGC 1 cut(s) 686
PdmI GAANNNNTTC 2 cut(s) 887, 1558
PfeI GAWTC 8 cut(s) 319, 443, 475, 572, 784, 950, 1020, 1458
PkrI GCNGC 1 cut(s) 802
PleI GAGTC 6 cut(s) 189, 408, 427, 774, 1244, 1609
PpsI GAGTC 6 cut(s) 189, 408, 427, 774, 1244, 1609
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 3 cut(s) 75, 670, 1045
PspGI CCWGG 3 cut(s) 75, 670, 1045
PspPI GGNCC 2 cut(s) 302, 817
PsuI RGATCY 1 cut(s) 1123
RsaI GTAC 3 cut(s) 107, 373, 1513
RsaNI GTAC 3 cut(s) 106, 372, 1512
RseI CAYNNNNRTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 144
SatI GCNGC 1 cut(s) 801
Sau3AI GATC 5 cut(s) 27, 146, 232, 1123, 1533
Sau96I GGNCC 2 cut(s) 302, 817
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 6 cut(s) 189, 409, 428, 775, 1244, 1610
ScrFI CCNGG 4 cut(s) 60, 77, 672, 1047
SduI GDGCHC 2 cut(s) 144, 1098
SfaNI GCATC 3 cut(s) 142, 164, 1489
SfuI TTCGAA 2 cut(s) 473, 787
SinI GGWCC 2 cut(s) 302, 817
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 589, 1646
SmoI CTYRAG 2 cut(s) 589, 1646
Sse9I AATT 9 cut(s) 38, 354, 433, 607, 692, 917, 1061, 1067, 1439
SsiI CCGC 2 cut(s) 1450, 1469
SspMI CTAG 3 cut(s) 440, 1143, 1263
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 4 cut(s) 58, 75, 670, 1045
TaaI ACNGT 7 cut(s) 463, 726, 841, 873, 1118, 1244, 1636
TaiI ACGT 3 cut(s) 126, 681, 890
TaqI TCGA 2 cut(s) 473, 787
TasI AATT 9 cut(s) 38, 354, 433, 607, 692, 917, 1061, 1067, 1439
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 8 cut(s) 319, 443, 475, 572, 784, 950, 1020, 1458
TscAI CASTG 3 cut(s) 466, 844, 1123
TseFI GTSAC 5 cut(s) 245, 289, 463, 841, 1393
TseI GCWGC 1 cut(s) 800
Tsp45I GTSAC 5 cut(s) 245, 289, 463, 841, 1393
TspGWI ACGGA 3 cut(s) 342, 389, 1422
TspRI CASTG 3 cut(s) 466, 844, 1123
Vha464I CTTAAG 1 cut(s) 1646
VpaK11BI GGWCC 2 cut(s) 302, 817
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 3 cut(s) 917, 1061, 1439
XmnI GAANNNNTTC 2 cut(s) 887, 1558
XspI CTAG 3 cut(s) 440, 1143, 1263
ZrmI AGTACT 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.