AT4G31660

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001490
Physical Location & Seq
Forward (+)
15334013 .. 15335630
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31660.1

Sequence Viewer

Length: 756 bp
ATGGCGGATCCAGTTCTTCAATCTCCGAAAAACTCACATTTCTTCCAGCCACTTCTTCCCGGCTTCGACTCTTACCTTAACATTCCTGTGAAGTTTTTCTCAAAACGCATACAAGGAAGAAACGAAGGAAGGACAGTGGAGCTAAGAACCGACGCGTCTGAAAAAACTTGGCAAGTTAAGATCCAAGGTCGGAGACTAACAGTGGGCTGGAAAGAGTTCGCCAGCGCGCATGATTTCCGAGTTGGGGATATTATCGTTTTCAGACACGAAGGATCTTTGGTATTTCATGTCACTGCATTGGGACCCAGTTGCTGTGAGATTCAATATGTACCGTCTTGCAATAATCAGGAGAACATTAGTAACTTGTCGATGAAGCAGAGCATAAAAACAGAACTAGAGTCTTCACTCGACGAAGACAAAGTTAACATGGGAAAGTTTCCAAGAAAAAAACATGTGAAGAAGAGGATTCCTGAAGCAGAAGCCAAGTCTTTTTCATCAGACAAGTCCTGTTTCGTTGCACATGTAACAGATTCTAACTTACGAGAGGATACACTGTTTCTTCCAAGGAAGTTTGATAGGTCCGATGGTCTGATTAAAGGAAGTAACAAGATTGTTCTGATGAATGAAGAAGCAAGGACATGGACGCTTATTCTGAAGTTTAGGAATTCAAGTAGAACGTTTTACATGAGGGGTGGCTGGACAAGTTTCTCCATGAGCATGGGCTTAAACCTGGAGATTCCGTCACGTTTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

251

Amino Acids

28.76

Weight (kDa)

9.53

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 25 - 92 3.5e-10 B3 DNA binding domain
B3 PF02362 171 - 242 3e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 155, 227
AciI CCGC 1 cut(s) 5
AclI AACGTT 1 cut(s) 677
AclWI GGATC 4 cut(s) 2, 15, 175, 280
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 2 cut(s) 492, 674
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 244
AflIII ACRYGT 3 cut(s) 153, 451, 520
AgsI TTSAA 3 cut(s) 20, 323, 669
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 4 cut(s) 2, 15, 175, 280
AlwNI CAGNNNCTG 1 cut(s) 312
ApoI RAATTY 1 cut(s) 664
Asp700I GAANNNNTTC 2 cut(s) 95, 215
AspLEI GCGC 2 cut(s) 227, 229
AspS9I GGNCC 2 cut(s) 302, 579
AsuC2I CCSGG 1 cut(s) 60
AvaII GGWCC 2 cut(s) 302, 579
BamHI GGATCC 1 cut(s) 7
BbsI GAAGAC 2 cut(s) 393, 420
BccI CCATC 1 cut(s) 578
BciT130I CCWGG 1 cut(s) 731
BciVI GTATCC 1 cut(s) 541
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 2 cut(s) 395, 754
BfuI GTATCC 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 60, 731
Bme18I GGWCC 2 cut(s) 302, 579
BmgT120I GGNCC 2 cut(s) 302, 579
BmiI GGNNCC 3 cut(s) 9, 303, 304
BmrFI CCNGG 2 cut(s) 60, 731
BmrI ACTGGG 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 300
BpiI GAAGAC 2 cut(s) 393, 420
BpmI CTGGAG 1 cut(s) 752
BpuMI CCSGG 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 184, 563
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 11, 306
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 2 cut(s) 184, 563
BseLI CCNNNNNNNGG 1 cut(s) 244
BseNI ACTGG 2 cut(s) 11, 306
BsePI GCGCGC 1 cut(s) 225
Bsh1236I CGCG 2 cut(s) 155, 227
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 315
Bsp143I GATC 3 cut(s) 7, 180, 272
BspACI CCGC 1 cut(s) 5
BspFNI CGCG 2 cut(s) 155, 227
BspLI GGNNCC 3 cut(s) 9, 303, 304
BspPI GGATC 4 cut(s) 2, 15, 175, 280
BsrI ACTGG 2 cut(s) 11, 306
BssECI CCNNGG 2 cut(s) 184, 563
BssHII GCGCGC 1 cut(s) 225
BssMI GATC 3 cut(s) 7, 180, 272
BssT1I CCWWGG 2 cut(s) 184, 563
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 4 cut(s) 136, 202, 333, 555
Bst6I CTCTTC 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 223, 227
BstDEI CTNAG 1 cut(s) 143
BstFNI CGCG 2 cut(s) 155, 227
BstHHI GCGC 2 cut(s) 227, 229
BstKTI GATC 3 cut(s) 10, 183, 275
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 7, 180, 272
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 2 cut(s) 455, 524
BstSCI CCNGG 2 cut(s) 58, 729
BstUI CGCG 2 cut(s) 155, 227
BstV2I GAAGAC 2 cut(s) 393, 420
BstX2I RGATCY 3 cut(s) 7, 180, 272
BstXI CCANNNNNNTGG 1 cut(s) 718
BstYI RGATCY 3 cut(s) 7, 180, 272
BsuI GTATCC 1 cut(s) 541
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 4 cut(s) 141, 207, 291, 551
Cac8I GCNNGC 2 cut(s) 223, 227
CaiI CAGNNNCTG 1 cut(s) 312
CfoI GCGC 2 cut(s) 227, 229
Cfr13I GGNCC 2 cut(s) 302, 579
CseI GACGC 3 cut(s) 144, 161, 652
Csp6I GTAC 1 cut(s) 329
CviAII CATG 9 cut(s) 230, 287, 427, 452, 521, 639, 685, 712, 718
CviJI RGCY 7 cut(s) 49, 63, 142, 207, 482, 696, 723
CviKI_1 RGCY 7 cut(s) 49, 63, 142, 207, 482, 696, 723
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 1 cut(s) 143
DpnI GATC 3 cut(s) 9, 182, 274
DpnII GATC 3 cut(s) 7, 180, 272
DraI TTTAAA 1 cut(s) 750
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 184, 563
Eco47I GGWCC 2 cut(s) 302, 579
Eco57I CTGAAG 2 cut(s) 492, 674
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 729
EcoT14I CCWWGG 2 cut(s) 184, 563
ErhI CCWWGG 2 cut(s) 184, 563
FaeI CATG 9 cut(s) 233, 290, 430, 455, 524, 642, 688, 715, 721
FaqI GGGAC 1 cut(s) 315
FatI CATG 9 cut(s) 229, 286, 426, 451, 520, 638, 684, 711, 717
FspBI CTAG 2 cut(s) 395, 754
GlaI GCGC 2 cut(s) 226, 228
GsuI CTGGAG 1 cut(s) 752
HapII CCGG 1 cut(s) 60
HgaI GACGC 3 cut(s) 144, 161, 652
HhaI GCGC 2 cut(s) 227, 229
Hin1II CATG 9 cut(s) 233, 290, 430, 455, 524, 642, 688, 715, 721
Hin6I GCGC 2 cut(s) 225, 227
HinP1I GCGC 2 cut(s) 225, 227
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 6 cut(s) 68, 319, 398, 466, 530, 736
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 424
Hpy188III TCNNGA 2 cut(s) 347, 470
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 2 cut(s) 155, 413
HpyAV CCTTC 3 cut(s) 119, 123, 263
HpyCH4III ACNGT 4 cut(s) 136, 202, 333, 555
HpyCH4IV ACGT 2 cut(s) 677, 745
HpyCH4V TGCA 3 cut(s) 296, 339, 518
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 2 cut(s) 677, 745
Hsp92II CATG 9 cut(s) 233, 290, 430, 455, 524, 642, 688, 715, 721
HspAI GCGC 2 cut(s) 225, 227
KflI GGGWCCC 1 cut(s) 302
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 3 cut(s) 7, 180, 272
LmnI GCTCC 1 cut(s) 139
MaeI CTAG 2 cut(s) 395, 754
MaeII ACGT 2 cut(s) 677, 745
MaeIII GTNAC 5 cut(s) 289, 359, 523, 602, 741
MalI GATC 3 cut(s) 9, 182, 274
MboI GATC 3 cut(s) 7, 180, 272
MflI RGATCY 3 cut(s) 7, 180, 272
MluCI AATT 1 cut(s) 664
MluI ACGCGT 1 cut(s) 153
MlyI GAGTC 2 cut(s) 62, 407
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 3 cut(s) 456, 538, 681
MroXI GAANNNNTTC 2 cut(s) 95, 215
MseI TTAA 6 cut(s) 78, 177, 423, 594, 725, 749
MslI CAYNNNNRTG 2 cut(s) 86, 716
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 60, 731
MssI GTTTAAAC 1 cut(s) 750
MvaI CCWGG 1 cut(s) 731
MvnI CGCG 2 cut(s) 155, 227
NciI CCSGG 1 cut(s) 60
NdeII GATC 3 cut(s) 7, 180, 272
NlaIII CATG 9 cut(s) 233, 290, 430, 455, 524, 642, 688, 715, 721
NlaIV GGNNCC 3 cut(s) 9, 303, 304
NmuCI GTSAC 2 cut(s) 289, 741
NspI RCATGY 2 cut(s) 455, 524
PauI GCGCGC 1 cut(s) 225
PciI ACATGT 2 cut(s) 451, 520
PdmI GAANNNNTTC 2 cut(s) 95, 215
PfeI GAWTC 4 cut(s) 319, 466, 530, 736
PleI GAGTC 2 cut(s) 62, 406
PmeI GTTTAAAC 1 cut(s) 750
PpsI GAGTC 2 cut(s) 62, 406
PpuMI RGGWCCY 1 cut(s) 302
PscI ACATGT 2 cut(s) 451, 520
Psp1406I AACGTT 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 729
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 3 cut(s) 9, 303, 304
PspPI GGNCC 2 cut(s) 302, 579
PspPPI RGGWCCY 1 cut(s) 302
PstNI CAGNNNCTG 1 cut(s) 312
PsuI RGATCY 3 cut(s) 7, 180, 272
PteI GCGCGC 1 cut(s) 225
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 2 cut(s) 86, 716
SaqAI TTAA 6 cut(s) 78, 177, 423, 594, 725, 749
Sau3AI GATC 3 cut(s) 7, 180, 272
Sau96I GGNCC 2 cut(s) 302, 579
SchI GAGTC 2 cut(s) 62, 407
ScrFI CCNGG 2 cut(s) 60, 731
SetI ASST 7 cut(s) 78, 144, 190, 581, 680, 732, 748
SinI GGWCC 2 cut(s) 302, 579
SmiMI CAYNNNNRTG 2 cut(s) 86, 716
Sse9I AATT 1 cut(s) 664
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 395, 754
StyD4I CCNGG 2 cut(s) 58, 729
StyI CCWWGG 2 cut(s) 184, 563
TaaI ACNGT 4 cut(s) 136, 202, 333, 555
TaiI ACGT 2 cut(s) 680, 748
TaqI TCGA 3 cut(s) 66, 368, 408
TasI AATT 1 cut(s) 664
TfiI GAWTC 4 cut(s) 319, 466, 530, 736
Tru1I TTAA 6 cut(s) 78, 177, 423, 594, 725, 749
Tru9I TTAA 6 cut(s) 78, 177, 423, 594, 725, 749
TscAI CASTG 4 cut(s) 141, 207, 298, 558
TseFI GTSAC 2 cut(s) 289, 741
Tsp45I GTSAC 2 cut(s) 289, 741
TspDTI ATGAA 5 cut(s) 275, 386, 483, 635, 639
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 4 cut(s) 141, 207, 298, 558
VpaK11BI GGWCC 2 cut(s) 302, 579
XapI RAATTY 1 cut(s) 664
XceI RCATGY 2 cut(s) 455, 524
XmnI GAANNNNTTC 2 cut(s) 95, 215
XspI CTAG 2 cut(s) 395, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.