AT4G31680

BEST Arabidopsis thaliana protein match is transcriptional factor B3 family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001490
Physical Location & Seq
Reverse (-)
15340260 .. 15342081
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31680.1

Sequence Viewer

Length: 1389 bp
ATGGCGAATGCATCACAGTTATCTCCGACAAACAAACACTTCTTCAAGCCTCTTCTCCCCGGATTCCAGAGAAACCTCAATATTCCTGTGAAGTTCTTCTCCGAGCACATCGAGGGAAAACACGAGGGCGAGACTGTAAAGTTGAGAGCAGATGCGTCGAAGAGAACATGGGAAGTGAAGATGGATGGCAACAGACTCACCGAAGGTTGGAAAGAGTTCGTGGAGGCACATGATCTTCGTATCCGCGACTTCGTTGTCTTTAGACACGAAGGAGACATGGTGTTCCATGTCACTGCTTTGGGACCTAGTTGCTGTGAGATCCAATACCCACAGTCTATCAGCCATGAAGAAGGCGAAGAGAGTGGTGAAGTTGAAATATCCGAGAGAGAAGTTGAGGAGAATTTGCAAAAAGAATATGATCAGTCTTCAGCAGATCTGAATTGTTTTAGCCAATCCGTAACGCACTCAAACATATCAAATGATCTTGTGACTCTGCCCAGGGATTTCGCAAAACGAAACGGTTTAGACAAAGGAATGCATGAGATAGTATTGATGAATGAAGAAGGAAAGTCATGGGAATCAGAAGTAAGGAGTAGAATGTCTGGTCAGGTTTTTATTGTTGGAGGTTGGAAAAGTCTCTGCAGCGAAAATAAATTAAAAGGTGGAGATTCTTGCACATTCAAACTGCTGCAAAATGCGAAAACGCCCGTGTTTCAGCTCTGTAGCCGCATCGGAGAAAGTCGGTTTGTGAAGTTAACTCCTACACTAAACAGCCTTGAGATTGGCAAACAGCATCTACCGGTAAGTTTCACGAAAGGGAATGGACTCATACATCCGGGGGAGATAATTCTGGTGGACAAAGACAGAGTTGAATGGTCGATGAAGCTTCAGGTTGATAATAGAGGAGGGATGCATATATTTGGTGGTAATGACTGGAAAAGTTTCTGTGCCGCAAATGAAGTAGGCGCAGGGGAGTCACTAACTTTGGAGTTGATTCGAGGAGGCTTAAGTCCTTTATTCAAGTTCTTCTCCAAGATAGAGCAACCCTCATTCGAAGCAGAGGATAGGAGACACAAGAGAGCTCGAGTCCATAATGGGAGCCAGGAAACAGATAAGGGAGAACCTTCTCGAGCAACTAAAATGGGACCGGAGCTTGAGAAAAGGGAGAAGACAGCTGAAAAAGGAGAACCGTCTCGAGCATCTAACAAATCCAGTGGTAAACAAGGAAACTTACAGAAAACGCAAGCTTGCTCTGTCACAGATCACGTGGCTAAGGTGAAAGAGAGCGTTGTAGATACTTTAACTAGTATCAGACGGTTCCAAGCAGAGCTTGAAACAATGGAACAGAAATTAGAAGATTCATTGCAGGAAATCAACAAGTTAAGTTAG

Protein Analysis

462

Amino Acids

52.02

Weight (kDa)

6.25

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 21 - 96 1.6e-13 B3 DNA binding domain
B3 PF02362 149 - 243 3.5e-25 B3 DNA binding domain
B3 PF02362 249 - 345 1.4e-16 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AccII CGCG 1 cut(s) 246
AciI CCGC 3 cut(s) 244, 727, 951
AclWI GGATC 1 cut(s) 313
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 2 cut(s) 411, 872
AcvI CACGTG 1 cut(s) 1267
AfiI CCNNNNNNNGG 1 cut(s) 207
AflII CTTAAG 1 cut(s) 1006
AgeI ACCGGT 1 cut(s) 799
AgsI TTSAA 6 cut(s) 46, 374, 682, 872, 1021, 1334
AhlI ACTAGT 1 cut(s) 1304
AjnI CCWGG 2 cut(s) 497, 1101
AluBI AGCT 7 cut(s) 718, 886, 1082, 1153, 1175, 1247, 1330
AluI AGCT 7 cut(s) 718, 886, 1082, 1153, 1175, 1247, 1330
Alw21I GWGCWC 2 cut(s) 108, 1084
Alw26I GTCTC 5 cut(s) 125, 267, 641, 1063, 1197
AlwI GGATC 1 cut(s) 313
Ama87I CYCGRG 3 cut(s) 1083, 1128, 1194
ApeKI GCWGC 2 cut(s) 642, 688
ApoI RAATTY 1 cut(s) 400
AsiGI ACCGGT 1 cut(s) 799
Asp700I GAANNNNTTC 3 cut(s) 95, 215, 941
AspLEI GCGC 1 cut(s) 968
AspS9I GGNCC 2 cut(s) 302, 1145
AsuC2I CCSGG 2 cut(s) 60, 837
AsuHPI GGTGA 3 cut(s) 190, 377, 1288
AsuII TTCGAA 1 cut(s) 1053
AvaI CYCGRG 3 cut(s) 1083, 1128, 1194
AvaII GGWCC 2 cut(s) 302, 1145
BanII GRGCYC 1 cut(s) 1084
BauI CACGAG 1 cut(s) 122
BbrPI CACGTG 1 cut(s) 1267
BbsI GAAGAC 2 cut(s) 417, 1175
Bbv12I GWGCWC 2 cut(s) 108, 1084
BbvI GCAGC 2 cut(s) 654, 675
BccI CCATC 2 cut(s) 175, 179
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BciT130I CCWGG 2 cut(s) 499, 1103
BciVI GTATCC 1 cut(s) 251
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 2 cut(s) 60, 837
BcoDI GTCTC 5 cut(s) 125, 267, 641, 1063, 1197
BcuI ACTAGT 1 cut(s) 1304
BfaI CTAG 2 cut(s) 306, 1305
BfmI CTRYAG 2 cut(s) 640, 721
BfrI CTTAAG 1 cut(s) 1006
BfuI GTATCC 1 cut(s) 251
BglII AGATCT 1 cut(s) 433
BisI GCNGC 4 cut(s) 643, 689, 727, 951
BlsI GCNGC 4 cut(s) 644, 690, 728, 952
Bme1390I CCNGG 4 cut(s) 60, 499, 837, 1103
Bme18I GGWCC 2 cut(s) 302, 1145
BmeT110I CYCGRG 3 cut(s) 1083, 1128, 1194
BmgT120I GGNCC 2 cut(s) 302, 1145
BmiI GGNNCC 4 cut(s) 303, 1100, 1146, 1319
BmrFI CCNGG 4 cut(s) 60, 499, 837, 1103
BmsI GCATC 6 cut(s) 20, 142, 738, 802, 900, 1208
BpiI GAAGAC 2 cut(s) 417, 1175
BplI GAGNNNNNCTC 2 cut(s) 1031, 1063
Bpu10I CCTNAGC 1 cut(s) 1272
Bpu14I TTCGAA 1 cut(s) 1053
BpuEI CTTGAG 2 cut(s) 797, 1175
BpuMI CCSGG 2 cut(s) 60, 837
BsaAI YACGTR 1 cut(s) 1267
BsaJI CCNNGG 4 cut(s) 58, 497, 498, 836
BsaWI WCCGGW 2 cut(s) 799, 1147
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 799
Bse1I ACTGG 2 cut(s) 938, 1212
Bse3DI GCAATG 1 cut(s) 1361
BseBI CCWGG 2 cut(s) 499, 1103
BseDI CCNNGG 4 cut(s) 58, 497, 498, 836
BseGI GGATG 3 cut(s) 190, 832, 915
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 1361
BseNI ACTGG 2 cut(s) 938, 1212
BseRI GAGGAG 3 cut(s) 410, 918, 1014
BseXI GCAGC 2 cut(s) 654, 675
Bsh1236I CGCG 1 cut(s) 246
BshTI ACCGGT 1 cut(s) 799
BsiHKAI GWGCWC 2 cut(s) 108, 1084
BsiHKCI CYCGRG 3 cut(s) 1083, 1128, 1194
BsiSI CCGG 4 cut(s) 60, 800, 836, 1148
BslFI GGGAC 2 cut(s) 315, 1158
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 5 cut(s) 125, 267, 641, 1063, 1197
BsmBI CGTCTC 1 cut(s) 1197
BsmFI GGGAC 2 cut(s) 315, 1158
BsmI GAATGC 2 cut(s) 13, 540
BsoBI CYCGRG 3 cut(s) 1083, 1128, 1194
Bsp119I TTCGAA 1 cut(s) 1053
Bsp1286I GDGCHC 2 cut(s) 108, 1084
Bsp143I GATC 6 cut(s) 232, 318, 418, 433, 481, 1261
BspACI CCGC 3 cut(s) 244, 727, 951
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 4 cut(s) 303, 1100, 1146, 1319
BspMAI CTGCAG 1 cut(s) 644
BspPI GGATC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 1053
BspTI CTTAAG 1 cut(s) 1006
BsrDI GCAATG 1 cut(s) 1361
BsrFI RCCGGY 1 cut(s) 799
BsrI ACTGG 2 cut(s) 938, 1212
BssAI RCCGGY 1 cut(s) 799
BssECI CCNNGG 4 cut(s) 58, 497, 498, 836
BssMI GATC 6 cut(s) 232, 318, 418, 433, 481, 1261
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 499, 1103
Bst4CI ACNGT 6 cut(s) 18, 136, 333, 521, 1191, 1317
Bst6I CTCTTC 3 cut(s) 57, 155, 351
BstAFI CTTAAG 1 cut(s) 1006
BstBAI YACGTR 1 cut(s) 1267
BstBI TTCGAA 1 cut(s) 1053
BstC8I GCNNGC 2 cut(s) 1245, 1249
BstDEI CTNAG 1 cut(s) 1272
BstF5I GGATG 3 cut(s) 190, 832, 915
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 968
BstKTI GATC 6 cut(s) 235, 321, 421, 436, 484, 1264
BstMAI GTCTC 5 cut(s) 125, 267, 641, 1063, 1197
BstMBI GATC 6 cut(s) 232, 318, 418, 433, 481, 1261
BstNI CCWGG 2 cut(s) 499, 1103
BstSCI CCNGG 4 cut(s) 58, 497, 835, 1101
BstSFI CTRYAG 2 cut(s) 640, 721
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 654, 675
BstV2I GAAGAC 2 cut(s) 417, 1175
BstX2I RGATCY 2 cut(s) 318, 433
BstYI RGATCY 2 cut(s) 318, 433
BsuI GTATCC 1 cut(s) 251
BtsCI GGATG 3 cut(s) 190, 832, 915
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 291, 1219
Cac8I GCNNGC 2 cut(s) 1245, 1249
CfoI GCGC 1 cut(s) 968
Cfr10I RCCGGY 1 cut(s) 799
Cfr13I GGNCC 2 cut(s) 302, 1145
CseI GACGC 1 cut(s) 144
CspAI ACCGGT 1 cut(s) 799
CspCI CAANNNNNGTGG 2 cut(s) 1195, 1230
CviAII CATG 7 cut(s) 168, 230, 277, 287, 344, 539, 573
DdeI CTNAG 1 cut(s) 1272
DpnI GATC 6 cut(s) 234, 320, 420, 435, 483, 1263
DpnII GATC 6 cut(s) 232, 318, 418, 433, 481, 1261
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
Eam1104I CTCTTC 3 cut(s) 57, 155, 351
EarI CTCTTC 3 cut(s) 57, 155, 351
Ecl136II GAGCTC 1 cut(s) 1082
Eco24I GRGCYC 1 cut(s) 1084
Eco47I GGWCC 2 cut(s) 302, 1145
Eco53kI GAGCTC 1 cut(s) 1082
Eco57I CTGAAG 2 cut(s) 411, 872
Eco72I CACGTG 1 cut(s) 1267
Eco88I CYCGRG 3 cut(s) 1083, 1128, 1194
EcoICRI GAGCTC 1 cut(s) 1082
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 497, 1101
EcoT22I ATGCAT 3 cut(s) 13, 540, 915
EcoT38I GRGCYC 1 cut(s) 1084
Esp3I CGTCTC 1 cut(s) 1197
FaeI CATG 7 cut(s) 171, 233, 280, 290, 347, 542, 576
FalI AAGNNNNNCTT 2 cut(s) 1314, 1346
FaqI GGGAC 2 cut(s) 315, 1158
FatI CATG 7 cut(s) 167, 229, 276, 286, 343, 538, 572
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 4 cut(s) 643, 689, 727, 951
FokI GGATG 3 cut(s) 197, 819, 922
FriOI GRGCYC 1 cut(s) 1084
Fsp4HI GCNGC 4 cut(s) 643, 689, 727, 951
FspBI CTAG 2 cut(s) 306, 1305
GlaI GCGC 1 cut(s) 967
GluI GCNGC 4 cut(s) 643, 689, 727, 951
HapII CCGG 4 cut(s) 60, 800, 836, 1148
HgaI GACGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 968
Hin1II CATG 7 cut(s) 171, 233, 280, 290, 347, 542, 576
Hin6I GCGC 1 cut(s) 966
HinP1I GCGC 1 cut(s) 966
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HindIII AAGCTT 2 cut(s) 884, 1245
HpaI GTTAAC 1 cut(s) 756
HpaII CCGG 4 cut(s) 60, 800, 836, 1148
HphI GGTGA 3 cut(s) 190, 377, 1288
Hpy166II GTNNAC 3 cut(s) 756, 856, 1220
Hpy188I TCNGA 7 cut(s) 27, 103, 382, 438, 583, 734, 1313
Hpy188III TCNNGA 4 cut(s) 67, 811, 1128, 1194
Hpy8I GTNNAC 3 cut(s) 756, 856, 1220
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 5 cut(s) 197, 263, 344, 557, 1134
HpyCH4III ACNGT 6 cut(s) 18, 136, 333, 521, 1191, 1317
HpyCH4IV ACGT 1 cut(s) 1266
HpyCH4V TGCA 8 cut(s) 11, 406, 538, 642, 675, 691, 913, 1366
HpyF3I CTNAG 1 cut(s) 1272
HpySE526I ACGT 1 cut(s) 1266
Hsp92II CATG 7 cut(s) 171, 233, 280, 290, 347, 542, 576
HspAI GCGC 1 cut(s) 966
Ksp22I TGATCA 1 cut(s) 418
KspAI GTTAAC 1 cut(s) 756
Kzo9I GATC 6 cut(s) 232, 318, 418, 433, 481, 1261
LmnI GCTCC 2 cut(s) 1098, 1150
Lsp1109I GCAGC 2 cut(s) 654, 675
LweI GCATC 6 cut(s) 20, 142, 738, 802, 900, 1208
MaeI CTAG 2 cut(s) 306, 1305
MaeII ACGT 1 cut(s) 1266
MaeIII GTNAC 5 cut(s) 289, 457, 487, 975, 1255
MalI GATC 6 cut(s) 234, 320, 420, 435, 483, 1263
MboI GATC 6 cut(s) 232, 318, 418, 433, 481, 1261
MflI RGATCY 2 cut(s) 318, 433
MhlI GDGCHC 2 cut(s) 108, 1084
MluCI AATT 5 cut(s) 400, 439, 653, 846, 1349
MlyI GAGTC 5 cut(s) 189, 484, 819, 983, 1095
MmeI TCCRAC 4 cut(s) 50, 188, 601, 608
Mph1103I ATGCAT 3 cut(s) 13, 540, 915
MroXI GAANNNNTTC 3 cut(s) 95, 215, 941
MseI TTAA 5 cut(s) 656, 755, 1007, 1301, 1382
MspA1I CMGCKG 1 cut(s) 1175
MspCI CTTAAG 1 cut(s) 1006
MspI CCGG 4 cut(s) 60, 800, 836, 1148
MspR9I CCNGG 4 cut(s) 60, 499, 837, 1103
Mva1269I GAATGC 2 cut(s) 13, 540
MvaI CCWGG 2 cut(s) 499, 1103
MvnI CGCG 1 cut(s) 246
NciI CCSGG 2 cut(s) 60, 837
NdeII GATC 6 cut(s) 232, 318, 418, 433, 481, 1261
NlaIII CATG 7 cut(s) 171, 233, 280, 290, 347, 542, 576
NlaIV GGNNCC 4 cut(s) 303, 1100, 1146, 1319
NmuCI GTSAC 4 cut(s) 289, 487, 975, 1255
NsiI ATGCAT 3 cut(s) 13, 540, 915
NspV TTCGAA 1 cut(s) 1053
PaeR7I CTCGAG 3 cut(s) 1083, 1128, 1194
PasI CCCWGGG 1 cut(s) 498
PctI GAATGC 2 cut(s) 13, 540
PdmI GAANNNNTTC 3 cut(s) 95, 215, 941
PfeI GAWTC 5 cut(s) 63, 578, 668, 994, 1358
PinAI ACCGGT 1 cut(s) 799
PkrI GCNGC 4 cut(s) 644, 690, 728, 952
PleI GAGTC 5 cut(s) 189, 484, 819, 982, 1094
PmaCI CACGTG 1 cut(s) 1267
PmlI CACGTG 1 cut(s) 1267
PpsI GAGTC 5 cut(s) 189, 484, 819, 982, 1094
Ppu21I YACGTR 1 cut(s) 1267
PpuMI RGGWCCY 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 1084
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 497, 1101
PspCI CACGTG 1 cut(s) 1267
PspGI CCWGG 2 cut(s) 497, 1101
PspN4I GGNNCC 4 cut(s) 303, 1100, 1146, 1319
PspPI GGNCC 2 cut(s) 302, 1145
PspPPI RGGWCCY 1 cut(s) 302
PspXI VCTCGAGB 1 cut(s) 1083
PstI CTGCAG 1 cut(s) 644
PsuI RGATCY 2 cut(s) 318, 433
PvuII CAGCTG 1 cut(s) 1175
SacI GAGCTC 1 cut(s) 1084
SaqAI TTAA 5 cut(s) 656, 755, 1007, 1301, 1382
SatI GCNGC 4 cut(s) 643, 689, 727, 951
Sau3AI GATC 6 cut(s) 232, 318, 418, 433, 481, 1261
Sau96I GGNCC 2 cut(s) 302, 1145
SchI GAGTC 5 cut(s) 189, 484, 819, 983, 1095
ScrFI CCNGG 4 cut(s) 60, 499, 837, 1103
SduI GDGCHC 2 cut(s) 108, 1084
SfaNI GCATC 6 cut(s) 20, 142, 738, 802, 900, 1208
SfcI CTRYAG 2 cut(s) 640, 721
Sfr274I CTCGAG 3 cut(s) 1083, 1128, 1194
SfuI TTCGAA 1 cut(s) 1053
SinI GGWCC 2 cut(s) 302, 1145
SlaI CTCGAG 3 cut(s) 1083, 1128, 1194
SmlI CTYRAG 6 cut(s) 776, 1006, 1083, 1128, 1154, 1194
SmoI CTYRAG 6 cut(s) 776, 1006, 1083, 1128, 1154, 1194
SpeI ACTAGT 1 cut(s) 1304
Sse9I AATT 5 cut(s) 400, 439, 653, 846, 1349
SsiI CCGC 3 cut(s) 244, 727, 951
SspI AATATT 1 cut(s) 82
SspMI CTAG 2 cut(s) 306, 1305
SstI GAGCTC 1 cut(s) 1084
StyD4I CCNGG 4 cut(s) 58, 497, 835, 1101
TaaI ACNGT 6 cut(s) 18, 136, 333, 521, 1191, 1317
TaiI ACGT 1 cut(s) 1269
TaqI TCGA 8 cut(s) 111, 158, 878, 997, 1053, 1084, 1129, 1195
TasI AATT 5 cut(s) 400, 439, 653, 846, 1349
TauI GCSGC 2 cut(s) 729, 953
TfiI GAWTC 5 cut(s) 63, 578, 668, 994, 1358
Tru1I TTAA 5 cut(s) 656, 755, 1007, 1301, 1382
Tru9I TTAA 5 cut(s) 656, 755, 1007, 1301, 1382
TscAI CASTG 2 cut(s) 298, 1219
TseFI GTSAC 4 cut(s) 289, 487, 975, 1255
TseI GCWGC 2 cut(s) 642, 688
Tsp45I GTSAC 4 cut(s) 289, 487, 975, 1255
TspDTI ATGAA 6 cut(s) 360, 569, 573, 896, 972, 1350
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 2 cut(s) 298, 1219
Vha464I CTTAAG 1 cut(s) 1006
VpaK11BI GGWCC 2 cut(s) 302, 1145
XapI RAATTY 1 cut(s) 400
XhoI CTCGAG 3 cut(s) 1083, 1128, 1194
XmnI GAANNNNTTC 3 cut(s) 95, 215, 941
XspI CTAG 2 cut(s) 306, 1305
Zsp2I ATGCAT 3 cut(s) 13, 540, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.