Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001490

Physical Location & Seq

Genomic Coordinates Reverse (-)

15343990 .. 15345180

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGAATGCATCACCCTTGTCTCCGACTAACCAACACTTCTTCCAGCCTCTTCTTCCCGGATTCCAGAGCAACCTCAAAATTCCTGTGAACTACTTCTCTGAGCACATCGAGGGAAAACACGAAGGCAAGACTGTAACGTTGAGAACAGATGCGTCGGAGAGAACATGGGAAGTAAAGATGGAGGGTCATAGACTCACGGAAGGTTGGAAAGAGTTCGTTGAGGCACATGATCTTCGAATCGGTGACTTTGTTGTCTTTAGACATGAAGGAGACATGGTGTTCCATGTCACTGCTTTGGGACCTAGTTGCTGTGAGATCCAATACCCACAGTCTAGCAGACATGAAGAAGGCGAAGAGAGTGGTGAAAATGAAATATCCGAGAAAGAAGGTGAAGAGAATGTGCAAAAAGAATCTGATAAGTCTTCATCAGATCTGAATTGTTTTAGCCAATCCGTGACGCATTCAAACATATCAAGAGATGCAGTGAGTGTGCCGAGAGATTTCGTGAAGCGAAGTGGTTTTAGTAAAGGAAGGCATGAGATAGTTTTGATGAACGAAGAAGGAAAGTCATGGGAATCAGAAGTAAAGAGTTATATGTCTGGTGCGGTTTATTTAGTTGGAGGTTGGACAACTTTCTGCACCGAAAATAAATTAGATGTTGGAGATTCTTGCACATTCAAACTGTTGCAAAAGGCGAAAACGCCCGTGTTTCAGCTCTGCAGCCGCACAAAGGTGGAGAGTATGAACATAACTGGAGAAAGCAAGTTTGTGAAGTTAACTCCTACACCAAGCAGCCTTGCGCTTGGTAAAAGCATCTACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

275

Amino Acids

30.93

Weight (kDa)

5.74

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	23 - 96	1.2e-14	B3 DNA binding domain
B3	PF02362	149 - 243	2.7e-24	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT2G12170 AT2G13985 AT2G24645 AT2G24645 AT2G24645 AT2G24645 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24681 AT2G24681 AT2G24690 AT2G24690 AT2G24696 AT2G24700 AT4G00260 AT4G31610 AT4G31610 AT4G31615 AT4G31620 AT4G31620 AT4G31630 AT4G31640 AT4G31650 AT4G31650 AT4G31660 AT4G31680 AT4G31680 AT4G31685 AT4G31690 AT4G32970 AT5G32460

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT1G26680 AT2G12170 AT2G13985 AT2G24645 AT2G24645 AT2G24645 AT2G24645 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24650 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24680 AT2G24681 AT2G24681 AT2G24690 AT2G24690 AT2G24696 AT2G24700 AT4G00260 AT4G31610 AT4G31610 AT4G31615 AT4G31620 AT4G31620 AT4G31630 AT4G31640 AT4G31650 AT4G31650 AT4G31660 AT4G31680 AT4G31680 AT4G31685 AT4G31690 AT4G32970 AT5G32460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AciI	CCGC	2 cut(s)	608, 727
AclI	AACGTT	1 cut(s)	140
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	733
AgsI	TTSAA	2 cut(s)	468, 682
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	1 cut(s)	718
AluI	AGCT	1 cut(s)	718
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	2 cut(s)	27, 267
AlwI	GGATC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	723, 795
ApoI	RAATTY	1 cut(s)	81
Asp700I	GAANNNNTTC	2 cut(s)	95, 215
AspLEI	GCGC	1 cut(s)	805
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	4 cut(s)	6, 257, 377, 404
AsuII	TTCGAA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	735, 807
BccI	CCATC	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	27, 267
BfaI	CTAG	2 cut(s)	306, 336
BfmI	CTRYAG	1 cut(s)	721
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	3 cut(s)	724, 727, 796
BlsI	GCNGC	3 cut(s)	725, 728, 797
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	3 cut(s)	20, 142, 472
BpiI	GAAGAC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse1I	ACTGG	1 cut(s)	760
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	760
BseXI	GCAGC	2 cut(s)	735, 807
BsgI	GTGCAG	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	2 cut(s)	27, 267
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	2 cut(s)	13, 463
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	232, 318, 433
BspACI	CCGC	2 cut(s)	608, 727
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	725
BspPI	GGATC	1 cut(s)	313
BspT104I	TTCGAA	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	760
BssMI	GATC	3 cut(s)	232, 318, 433
Bst4CI	ACNGT	4 cut(s)	136, 333, 687, 824
Bst6I	CTCTTC	3 cut(s)	57, 351, 390
BstBI	TTCGAA	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	3 cut(s)	235, 321, 436
BstMAI	GTCTC	2 cut(s)	27, 267
BstMBI	GATC	3 cut(s)	232, 318, 433
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	721
BstV1I	GCAGC	2 cut(s)	735, 807
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	2 cut(s)	318, 433
BstYI	RGATCY	2 cut(s)	318, 433
BtsI	GCAGTG	2 cut(s)	291, 492
BtsIMutI	CAGTG	2 cut(s)	291, 492
CfoI	GCGC	1 cut(s)	805
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	2 cut(s)	144, 469
CviAII	CATG	8 cut(s)	168, 230, 266, 277, 287, 344, 539, 573
CviJI	RGCY	5 cut(s)	49, 450, 718, 726, 798
CviKI_1	RGCY	5 cut(s)	49, 450, 718, 726, 798
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	3 cut(s)	234, 320, 435
DpnII	GATC	3 cut(s)	232, 318, 433
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	3 cut(s)	57, 351, 390
EarI	CTCTTC	3 cut(s)	57, 351, 390
Eco47I	GGWCC	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	13
FaeI	CATG	8 cut(s)	171, 233, 269, 280, 290, 347, 542, 576
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	8 cut(s)	167, 229, 265, 276, 286, 343, 538, 572
Fnu4HI	GCNGC	3 cut(s)	724, 727, 796
Fsp4HI	GCNGC	3 cut(s)	724, 727, 796
FspBI	CTAG	2 cut(s)	306, 336
GlaI	GCGC	1 cut(s)	804
GluI	GCNGC	3 cut(s)	724, 727, 796
GsuI	CTGGAG	1 cut(s)	777
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	2 cut(s)	144, 469
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	8 cut(s)	171, 233, 269, 280, 290, 347, 542, 576
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HincII	GTYRAC	1 cut(s)	780
HindII	GTYRAC	1 cut(s)	780
HinfI	GANTC	6 cut(s)	63, 195, 240, 413, 578, 668
HpaI	GTTAAC	1 cut(s)	780
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	4 cut(s)	6, 257, 377, 404
Hpy166II	GTNNAC	2 cut(s)	91, 780
Hpy188I	TCNGA	8 cut(s)	27, 103, 160, 382, 418, 433, 438, 583
Hpy188III	TCNNGA	3 cut(s)	67, 477, 508
Hpy8I	GTNNAC	2 cut(s)	91, 780
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	7 cut(s)	119, 197, 263, 344, 383, 528, 557
HpyCH4III	ACNGT	4 cut(s)	136, 333, 687, 824
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	7 cut(s)	11, 406, 485, 642, 675, 691, 723
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	8 cut(s)	171, 233, 269, 280, 290, 347, 542, 576
HspAI	GCGC	1 cut(s)	803
KspAI	GTTAAC	1 cut(s)	780
Kzo9I	GATC	3 cut(s)	232, 318, 433
LpnPI	CCDG	6 cut(s)	59, 73, 80, 99, 588, 741
Lsp1109I	GCAGC	2 cut(s)	735, 807
LweI	GCATC	3 cut(s)	20, 142, 472
MaeI	CTAG	2 cut(s)	306, 336
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	4 cut(s)	136, 245, 289, 457
MalI	GATC	3 cut(s)	234, 320, 435
MboI	GATC	3 cut(s)	232, 318, 433
MboII	GAAGA	9 cut(s)	34, 44, 47, 227, 359, 368, 407, 417, 572
MflI	RGATCY	2 cut(s)	318, 433
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	3 cut(s)	81, 439, 653
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	6 cut(s)	50, 138, 188, 601, 608, 643
MnlI	CCTC	6 cut(s)	60, 86, 106, 178, 217, 617
Mph1103I	ATGCAT	1 cut(s)	13
MroXI	GAANNNNTTC	2 cut(s)	95, 215
MseI	TTAA	2 cut(s)	779, 826
MslI	CAYNNNNRTG	1 cut(s)	734
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	60
Mva1269I	GAATGC	2 cut(s)	13, 463
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	232, 318, 433
NlaIII	CATG	8 cut(s)	171, 233, 269, 280, 290, 347, 542, 576
NlaIV	GGNNCC	1 cut(s)	303
NmeAIII	GCCGAG	1 cut(s)	522
NmuCI	GTSAC	3 cut(s)	245, 289, 457
NsiI	ATGCAT	1 cut(s)	13
NspV	TTCGAA	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	734
PctI	GAATGC	2 cut(s)	13, 463
PdmI	GAANNNNTTC	2 cut(s)	95, 215
PfeI	GAWTC	5 cut(s)	63, 240, 413, 578, 668
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	725, 728, 797
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	302
Psp1406I	AACGTT	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	302
PspPPI	RGGWCCY	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	725
PsuI	RGATCY	2 cut(s)	318, 433
RseI	CAYNNNNRTG	1 cut(s)	734
SaqAI	TTAA	2 cut(s)	779, 826
SatI	GCNGC	3 cut(s)	724, 727, 796
Sau3AI	GATC	3 cut(s)	232, 318, 433
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	8 cut(s)	78, 143, 208, 307, 394, 628, 720, 738
SfaNI	GCATC	3 cut(s)	20, 142, 472
SfcI	CTRYAG	1 cut(s)	721
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	734
Sse9I	AATT	3 cut(s)	81, 439, 653
SsiI	CCGC	2 cut(s)	608, 727
SspMI	CTAG	2 cut(s)	306, 336
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	4 cut(s)	136, 333, 687, 824
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	111, 238
TasI	AATT	3 cut(s)	81, 439, 653
TauI	GCSGC	1 cut(s)	729
TfiI	GAWTC	5 cut(s)	63, 240, 413, 578, 668
Tru1I	TTAA	2 cut(s)	779, 826
Tru9I	TTAA	2 cut(s)	779, 826
TscAI	CASTG	2 cut(s)	298, 492
TseFI	GTSAC	3 cut(s)	245, 289, 457
TseI	GCWGC	2 cut(s)	723, 795
Tsp45I	GTSAC	3 cut(s)	245, 289, 457
TspDTI	ATGAA	6 cut(s)	282, 360, 387, 417, 569, 761
TspGWI	ACGGA	2 cut(s)	215, 445
TspRI	CASTG	2 cut(s)	298, 492
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	81
XmnI	GAANNNNTTC	2 cut(s)	95, 215
XspI	CTAG	2 cut(s)	306, 336
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.