AT4G31610
NAC Family

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001490
Physical Location & Seq
Forward (+)
15317499 .. 15320046
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31610.2

Sequence Viewer

Length: 1554 bp
ATGGCGGATCCACCACATTTCTCTCTGTTTCAGCAAAAATTTCGTACCGGAGACAAACCATTTCTCACTCTTGATGCTGACTTCTTAATGAATCACACGAAAGTGTTACTAAAATCGGATGCTTCAGACAAAGTTTGGAAAGTGAAACTGGACGGCGGTAGGCTCTCCGAAGGCTGGGAAGAGTTCGCCTGCGACCAGAAATTCAGAGACGGTGACGTTTTGGTTTTCAAACATCATGGAGACGAGGTCTTTCATGTAGCTGTGGTGTCCCCATCTGTTTCCGGCGACATACGTAACGCATCTTCTAGCCAAGTTATTACGGAAGATACTTATATTGATGTTGACGATGTTGATGATGATGATTATGGACAAGACGACGAAGATGATGATGATGATGATGATGAGGGCGAGGATAATATAGAGAACATATCGGAGAAGACGGATAAAAGACAAGAAGCAGATTCTTCATCAGACCACTCAGGTTTCATCACAGCACGTGTCACTCGTTATAGCCTCCTTCATGACCGTTTGGATCTTTCTAGAAATTTTACGTTGTTGTTTGGTGGGCACCAAAAAACATGTGAGATCGATGTAGTGGATGAGCAAGGGAGAAGATGGACAATGAAACTTGCCAAAAACATCTCAAGTGGTGTGTTTTACATCAGACTAGGCTGGGGAAACTTCTGCTGCGCTAATGGGCTAACTCAAGGAGACTTATGTAAGTTTAAACTTTTCCAAAATGAGGAAAGGCCTGTGCTTTGGTTGTGTCCACAGGAATCTGGCAATGGCCGTAAAGAGAAGAGGACGTTTGATGAAGTTTCCAAAGGAAAGGAGAAGAAGACCCCTTCACCATTTCTGATAGTAAAGTATACACCTAGCCGTGAGACTACCGGGCAACTATCACTTCCAGTGAGTTTCACGAGGAACAATAGCATTAATAAGACTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGGTCATCTTATCTACAGATAACAGGACTTGGAAGAGGCGCCGGAAGTGAATGGTTTTATTTGAGAAGAGGTTGGAGAGAGATGTGCGAAGCGAATGGAGTGGGAGTAAATGATTCTTTCAAGCTGGAACTGGTGTGGGAAGGAGCTAATCCTATGTTTAAGTTCTGCTCCAAGATTGAAAACCATGAATACAAGGGAAAAGGAAACCAAAGAACTCGTAAGAAGAGAGCTTGTGAGACTGCTCCACAGCCAAGGAATGTGAAAAAGACTCCAAGATTAGGAGTAGAGGGACCAGTGTATCAAGTTGATGAGGAGAGAGGACACACTCAGGTTTCAAACAGAACCAACACCATCTCAGGAAATTTACAGCGCTTGCTACCACCATCGTGCTCAGTCTCCGATCAGGTGGCTAATGTGAAACAGGGCATTGTAGATAGTCTGAACACTGTGAGACAATGTCGGACTGAGCTTGAGACAAGTGAACAAAATCTGCAAGCCTCTTTGCTAGCAATTGACGCCTTAGGGGAGAGGATATGGGGAATCAGCAAAATCCTCAGCAGTAATCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NACHT PNP_UDP_1 WD40

Protein Analysis

517

Amino Acids

58.39

Weight (kDa)

5.5

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 34 - 88 8.5e-08 B3 DNA binding domain
B3 PF02362 167 - 263 5.8e-20 B3 DNA binding domain
B3 PF02362 290 - 390 6e-20 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 567, 1019
AccI GTMKAC 1 cut(s) 869
AciI CCGC 2 cut(s) 5, 156
AclWI GGATC 3 cut(s) 2, 15, 540
AcoI YGGCCR 1 cut(s) 787
AcsI RAATTY 4 cut(s) 38, 200, 544, 1342
AcuI CTGAAG 1 cut(s) 108
AcvI CACGTG 1 cut(s) 497
AcyI GRCGYC 2 cut(s) 1020, 1497
AfaI GTAC 1 cut(s) 46
AfeI AGCGCT 1 cut(s) 1352
AfiI CCNNNNNNNGG 3 cut(s) 174, 742, 1259
AflIII ACRYGT 2 cut(s) 496, 578
AgsI TTSAA 4 cut(s) 229, 1102, 1160, 1317
AleI CACNNNNGTG 2 cut(s) 101, 1366
AluBI AGCT 5 cut(s) 260, 1105, 1127, 1211, 1450
AluI AGCT 5 cut(s) 260, 1105, 1127, 1211, 1450
Alw21I GWGCWC 1 cut(s) 1373
Alw26I GTCTC 9 cut(s) 45, 201, 234, 705, 878, 1211, 1381, 1426, 1448
AlwI GGATC 3 cut(s) 2, 15, 540
Aor51HI AGCGCT 1 cut(s) 1352
AoxI GGCC 2 cut(s) 749, 787
ApeKI GCWGC 1 cut(s) 687
ApoI RAATTY 4 cut(s) 38, 200, 544, 1342
AseI ATTAAT 1 cut(s) 936
AspLEI GCGC 3 cut(s) 692, 1022, 1353
AspS9I GGNCC 1 cut(s) 1271
AsuC2I CCSGG 1 cut(s) 892
AsuHPI GGTGA 2 cut(s) 224, 840
AsuNHI GCTAGC 1 cut(s) 1486
AvaII GGWCC 1 cut(s) 1271
AxyI CCTNAGG 1 cut(s) 1501
BaeGI GKGCMC 1 cut(s) 570
BaeI ACNNNNGTAYC 2 cut(s) 1262, 1295
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 2 cut(s) 567, 1019
BarI GAAGNNNNNNTAC 2 cut(s) 286, 318
BauI CACGAG 1 cut(s) 919
BbrPI CACGTG 1 cut(s) 497
BbsI GAAGAC 2 cut(s) 443, 845
Bbv12I GWGCWC 1 cut(s) 1373
BbvCI CCTCAGC 1 cut(s) 1535
BbvI GCAGC 1 cut(s) 674
BccI CCATC 5 cut(s) 280, 609, 965, 1340, 1372
BceAI ACGGC 3 cut(s) 169, 774, 864
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BcnI CCSGG 1 cut(s) 892
BcoDI GTCTC 9 cut(s) 45, 201, 234, 705, 878, 1211, 1381, 1426, 1448
BfaI CTAG 5 cut(s) 306, 540, 668, 876, 1487
BfmI CTRYAG 1 cut(s) 995
BfoI RGCGCY 2 cut(s) 1023, 1354
BisI GCNGC 1 cut(s) 688
BlsI GCNGC 1 cut(s) 689
Bme1390I CCNGG 1 cut(s) 892
Bme18I GGWCC 1 cut(s) 1271
BmgT120I GGNCC 1 cut(s) 1271
BmiI GGNNCC 4 cut(s) 9, 569, 1021, 1272
BmrFI CCNGG 1 cut(s) 892
BmrI ACTGGG 1 cut(s) 954
BmsI GCATC 3 cut(s) 64, 109, 308
BmtI GCTAGC 1 cut(s) 1490
BmuI ACTGGG 1 cut(s) 954
BpiI GAAGAC 2 cut(s) 443, 845
Bpu10I CCTNAGC 1 cut(s) 1535
BpuEI CTTGAG 3 cut(s) 628, 690, 1472
BpuMI CCSGG 1 cut(s) 892
Bsa29I ATCGAT 1 cut(s) 588
BsaAI YACGTR 2 cut(s) 293, 497
BsaHI GRCGYC 2 cut(s) 1020, 1497
BsaJI CCNNGG 1 cut(s) 1232
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 1071, 1101
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 742, 1259
Bse1I ACTGG 5 cut(s) 153, 908, 949, 1116, 1274
Bse21I CCTNAGG 1 cut(s) 1501
Bse3DI GCAATG 1 cut(s) 790
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 1232
BseGI GGATG 2 cut(s) 124, 604
BseLI CCNNNNNNNGG 3 cut(s) 174, 742, 1259
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 6 cut(s) 492, 1322, 1350, 1386, 1437, 1549
BseNI ACTGG 5 cut(s) 153, 908, 949, 1116, 1274
BseRI GAGGAG 1 cut(s) 1307
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 1 cut(s) 674
BseYI CCCAGC 2 cut(s) 174, 672
BshFI GGCC 2 cut(s) 751, 789
BshNI GGYRCC 2 cut(s) 567, 1019
BshVI ATCGAT 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 1373
BsiSI CCGG 4 cut(s) 48, 282, 891, 1023
BslFI GGGAC 2 cut(s) 253, 1284
BslI CCNNNNNNNGG 3 cut(s) 174, 742, 1259
BsmAI GTCTC 9 cut(s) 45, 201, 234, 705, 878, 1211, 1381, 1426, 1448
BsmBI CGTCTC 2 cut(s) 201, 234
BsmFI GGGAC 2 cut(s) 253, 1284
BsnI GGCC 2 cut(s) 751, 789
Bsp1286I GDGCHC 2 cut(s) 570, 1373
Bsp143I GATC 4 cut(s) 7, 532, 585, 1381
BspACI CCGC 2 cut(s) 5, 156
BspANI GGCC 2 cut(s) 751, 789
BspCNI CTCAG 6 cut(s) 491, 1321, 1349, 1385, 1438, 1548
BspDI ATCGAT 1 cut(s) 588
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 4 cut(s) 9, 569, 1021, 1272
BspOI GCTAGC 1 cut(s) 1490
BspPI GGATC 3 cut(s) 2, 15, 540
BspT107I GGYRCC 2 cut(s) 567, 1019
BsrDI GCAATG 1 cut(s) 790
BsrI ACTGG 5 cut(s) 153, 908, 949, 1116, 1274
BssECI CCNNGG 1 cut(s) 1232
BssMI GATC 4 cut(s) 7, 532, 585, 1381
BssNAI GTATAC 1 cut(s) 870
BssNI GRCGYC 2 cut(s) 1020, 1497
BssSI CACGAG 1 cut(s) 919
BssT1I CCWWGG 1 cut(s) 1232
Bst1107I GTATAC 1 cut(s) 870
Bst2BI CACGAG 1 cut(s) 919
Bst4CI ACNGT 3 cut(s) 212, 527, 1429
Bst6I CTCTTC 5 cut(s) 174, 794, 1009, 1042, 1199
BstACI GRCGYC 2 cut(s) 1020, 1497
BstBAI YACGTR 2 cut(s) 293, 497
BstC8I GCNNGC 4 cut(s) 190, 1355, 1476, 1488
BstDEI CTNAG 7 cut(s) 478, 1308, 1336, 1372, 1446, 1501, 1535
BstF5I GGATG 2 cut(s) 124, 604
BstH2I RGCGCY 2 cut(s) 1023, 1354
BstHHI GCGC 3 cut(s) 692, 1022, 1353
BstKTI GATC 4 cut(s) 10, 535, 588, 1384
BstMAI GTCTC 9 cut(s) 45, 201, 234, 705, 878, 1211, 1381, 1426, 1448
BstMBI GATC 4 cut(s) 7, 532, 585, 1381
BstMWI GCNNNNNNNGC 1 cut(s) 1496
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 890
BstSFI CTRYAG 1 cut(s) 995
BstSLI GKGCMC 1 cut(s) 570
BstSNI TACGTA 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 674
BstV2I GAAGAC 2 cut(s) 443, 845
BstX2I RGATCY 2 cut(s) 7, 532
BstYI RGATCY 2 cut(s) 7, 532
BstZ17I GTATAC 1 cut(s) 870
Bsu15I ATCGAT 1 cut(s) 588
Bsu36I CCTNAGG 1 cut(s) 1501
BsuRI GGCC 2 cut(s) 751, 789
BsuTUI ATCGAT 1 cut(s) 588
BtsCI GGATG 2 cut(s) 124, 604
BtsIMutI CAGTG 3 cut(s) 915, 1281, 1425
Cac8I GCNNGC 4 cut(s) 190, 1355, 1476, 1488
CciI TCATGA 1 cut(s) 520
CfoI GCGC 3 cut(s) 692, 1022, 1353
Cfr13I GGNCC 1 cut(s) 1271
ClaI ATCGAT 1 cut(s) 588
CseI GACGC 1 cut(s) 1505
Csp6I GTAC 1 cut(s) 45
CviAII CATG 5 cut(s) 236, 254, 521, 579, 1166
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 7 cut(s) 478, 1308, 1336, 1372, 1446, 1501, 1535
DinI GGCGCC 1 cut(s) 1021
DpnI GATC 4 cut(s) 9, 534, 587, 1383
DpnII GATC 4 cut(s) 7, 532, 585, 1381
DraI TTTAAA 1 cut(s) 727
EaeI YGGCCR 1 cut(s) 787
Eam1104I CTCTTC 5 cut(s) 174, 794, 1009, 1042, 1199
EarI CTCTTC 5 cut(s) 174, 794, 1009, 1042, 1199
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 1232
Eco147I AGGCCT 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 1271
Eco47III AGCGCT 1 cut(s) 1352
Eco57I CTGAAG 1 cut(s) 108
Eco72I CACGTG 1 cut(s) 497
Eco81I CCTNAGG 1 cut(s) 1501
EcoT14I CCWWGG 1 cut(s) 1232
EgeI GGCGCC 1 cut(s) 1021
EheI GGCGCC 1 cut(s) 1021
ErhI CCWWGG 1 cut(s) 1232
Esp3I CGTCTC 2 cut(s) 201, 234
FaeI CATG 5 cut(s) 239, 257, 524, 582, 1169
FaqI GGGAC 2 cut(s) 253, 1284
FatI CATG 5 cut(s) 235, 253, 520, 578, 1165
FblI GTMKAC 1 cut(s) 869
Fnu4HI GCNGC 1 cut(s) 688
FokI GGATG 2 cut(s) 131, 611
Fsp4HI GCNGC 1 cut(s) 688
FspBI CTAG 5 cut(s) 306, 540, 668, 876, 1487
GlaI GCGC 3 cut(s) 691, 1021, 1352
GluI GCNGC 1 cut(s) 688
GsaI CCCAGC 2 cut(s) 178, 676
HaeII RGCGCY 2 cut(s) 1023, 1354
HaeIII GGCC 2 cut(s) 751, 789
HapII CCGG 4 cut(s) 48, 282, 891, 1023
HgaI GACGC 1 cut(s) 1505
HhaI GCGC 3 cut(s) 692, 1022, 1353
Hin1I GRCGYC 2 cut(s) 1020, 1497
Hin1II CATG 5 cut(s) 239, 257, 524, 582, 1169
Hin6I GCGC 3 cut(s) 690, 1020, 1351
HinP1I GCGC 3 cut(s) 690, 1020, 1351
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 6 cut(s) 91, 461, 776, 1094, 1249, 1521
HpaII CCGG 4 cut(s) 48, 282, 891, 1023
HphI GGTGA 2 cut(s) 224, 840
Hpy166II GTNNAC 4 cut(s) 343, 770, 870, 1463
Hpy188III TCNNGA 5 cut(s) 71, 521, 540, 919, 1338
Hpy8I GTNNAC 4 cut(s) 343, 770, 870, 1463
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 4 cut(s) 164, 527, 855, 1115
HpyCH4III ACNGT 3 cut(s) 212, 527, 1429
HpyCH4IV ACGT 5 cut(s) 216, 292, 496, 551, 806
HpyCH4V TGCA 1 cut(s) 1474
HpyF10VI GCNNNNNNNGC 1 cut(s) 1496
HpyF3I CTNAG 7 cut(s) 478, 1308, 1336, 1372, 1446, 1501, 1535
HpySE526I ACGT 5 cut(s) 216, 292, 496, 551, 806
Hsp92I GRCGYC 2 cut(s) 1020, 1497
Hsp92II CATG 5 cut(s) 239, 257, 524, 582, 1169
HspAI GCGC 3 cut(s) 690, 1020, 1351
KasI GGCGCC 1 cut(s) 1019
Kzo9I GATC 4 cut(s) 7, 532, 585, 1381
LmnI GCTCC 3 cut(s) 1124, 1154, 1228
Lsp1109I GCAGC 1 cut(s) 674
LweI GCATC 3 cut(s) 64, 109, 308
MaeI CTAG 5 cut(s) 306, 540, 668, 876, 1487
MaeII ACGT 5 cut(s) 216, 292, 496, 551, 806
MaeIII GTNAC 4 cut(s) 105, 212, 293, 499
MalI GATC 4 cut(s) 9, 534, 587, 1383
MboI GATC 4 cut(s) 7, 532, 585, 1381
MfeI CAATTG 1 cut(s) 1491
MflI RGATCY 2 cut(s) 7, 532
MhlI GDGCHC 2 cut(s) 570, 1373
MluCI AATT 6 cut(s) 38, 200, 544, 954, 1342, 1491
Mly113I GGCGCC 1 cut(s) 1020
MlyI GAGTC 1 cut(s) 1243
MmeI TCCRAC 2 cut(s) 1034, 1421
MseI TTAA 4 cut(s) 86, 726, 936, 1140
MslI CAYNNNNRTG 2 cut(s) 101, 1366
MspI CCGG 4 cut(s) 48, 282, 891, 1023
MspR9I CCNGG 1 cut(s) 892
MssI GTTTAAAC 1 cut(s) 727
MunI CAATTG 1 cut(s) 1491
MwoI GCNNNNNNNGC 1 cut(s) 1496
NarI GGCGCC 1 cut(s) 1020
NciI CCSGG 1 cut(s) 892
NdeII GATC 4 cut(s) 7, 532, 585, 1381
NheI GCTAGC 1 cut(s) 1486
NlaIII CATG 5 cut(s) 239, 257, 524, 582, 1169
NlaIV GGNNCC 4 cut(s) 9, 569, 1021, 1272
NmuCI GTSAC 2 cut(s) 212, 499
NspI RCATGY 1 cut(s) 582
OliI CACNNNNGTG 2 cut(s) 101, 1366
PagI TCATGA 1 cut(s) 520
PceI AGGCCT 1 cut(s) 751
PciI ACATGT 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 502
PfeI GAWTC 5 cut(s) 91, 461, 776, 1094, 1521
PflFI GACNNNGTC 2 cut(s) 245, 1437
PkrI GCNGC 1 cut(s) 689
PleI GAGTC 1 cut(s) 1243
PluTI GGCGCC 1 cut(s) 1023
PmaCI CACGTG 1 cut(s) 497
PmeI GTTTAAAC 1 cut(s) 727
PmlI CACGTG 1 cut(s) 497
PpsI GAGTC 1 cut(s) 1243
Ppu21I YACGTR 2 cut(s) 293, 497
PscI ACATGT 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 936
PspCI CACGTG 1 cut(s) 497
PspFI CCCAGC 2 cut(s) 174, 672
PspN4I GGNNCC 4 cut(s) 9, 569, 1021, 1272
PspPI GGNCC 1 cut(s) 1271
PsuI RGATCY 2 cut(s) 7, 532
PsyI GACNNNGTC 2 cut(s) 245, 1437
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
RseI CAYNNNNRTG 2 cut(s) 101, 1366
SaqAI TTAA 4 cut(s) 86, 726, 936, 1140
SatI GCNGC 1 cut(s) 688
Sau3AI GATC 4 cut(s) 7, 532, 585, 1381
Sau96I GGNCC 1 cut(s) 1271
SchI GAGTC 1 cut(s) 1243
ScrFI CCNGG 1 cut(s) 892
SduI GDGCHC 2 cut(s) 570, 1373
SfaNI GCATC 3 cut(s) 64, 109, 308
SfcI CTRYAG 1 cut(s) 995
SfoI GGCGCC 1 cut(s) 1021
SinI GGWCC 1 cut(s) 1271
SmiMI CAYNNNNRTG 2 cut(s) 101, 1366
SmlI CTYRAG 3 cut(s) 643, 705, 1451
SmoI CTYRAG 3 cut(s) 643, 705, 1451
SnaBI TACGTA 1 cut(s) 293
Sse9I AATT 6 cut(s) 38, 200, 544, 954, 1342, 1491
SseBI AGGCCT 1 cut(s) 751
SsiI CCGC 2 cut(s) 5, 156
SspDI GGCGCC 1 cut(s) 1019
SspMI CTAG 5 cut(s) 306, 540, 668, 876, 1487
StuI AGGCCT 1 cut(s) 751
StyD4I CCNGG 1 cut(s) 890
StyI CCWWGG 1 cut(s) 1232
TaaI ACNGT 3 cut(s) 212, 527, 1429
TaiI ACGT 5 cut(s) 219, 295, 499, 554, 809
TaqI TCGA 1 cut(s) 588
TasI AATT 6 cut(s) 38, 200, 544, 954, 1342, 1491
TfiI GAWTC 5 cut(s) 91, 461, 776, 1094, 1521
Tru1I TTAA 4 cut(s) 86, 726, 936, 1140
Tru9I TTAA 4 cut(s) 86, 726, 936, 1140
TscAI CASTG 3 cut(s) 915, 1281, 1432
TseFI GTSAC 2 cut(s) 212, 499
TseI GCWGC 1 cut(s) 687
Tsp45I GTSAC 2 cut(s) 212, 499
TspDTI ATGAA 8 cut(s) 104, 242, 456, 475, 509, 638, 828, 1182
TspGWI ACGGA 2 cut(s) 335, 455
TspRI CASTG 3 cut(s) 915, 1281, 1432
Tth111I GACNNNGTC 2 cut(s) 245, 1437
VpaK11BI GGWCC 1 cut(s) 1271
VspI ATTAAT 1 cut(s) 936
XapI RAATTY 4 cut(s) 38, 200, 544, 1342
XbaI TCTAGA 1 cut(s) 539
XceI RCATGY 1 cut(s) 582
XmiI GTMKAC 1 cut(s) 869
XspI CTAG 5 cut(s) 306, 540, 668, 876, 1487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.