Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001890

Physical Location & Seq

Genomic Coordinates Forward (+)

9854517 .. 9860158

Gene Structure 5642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGCGAAGATTCAACTGGGTTCTGCGGCATGTACAAGCTCGAAGAACTTTTGATTCCGCGATCGGATTGCGTCAAGGGTCTCAGAAGCCGTTGTTCGAGCGATACATTCACGCTACAGGTATAAACAACTCCAGTGCTCGTAATTACTATGATGTTCTCGGTGTTTCTCCTAAAGCTACACGGGAGGAGATTAAAAAATCATTTCATGAGCTTGCGAAAAAATTCCACCCTGATACAAATAGAAATAATCCGTCAGCAAAAAGGAAGTTCCAGGAAATAAGAGAGGCATATGAGACCCTGGGAAATTCGGAAAGAAGAGAAGAATATGATAAGCTGCAGTATCGGAATTCGGATTATGTAAATAATGACGGTGGTGATTCAGAGAGGTTCAGACGTGCATACCAGTCCAATTTCTCGGATACTTTCCACAAGATTTTTTCTGAGATATTTGAGAACAATCAGATAAAACCTGATATTCGGGTGGAACTGTCGCTTTCTCTTTCCGAAGCTGCAGAAGGGTGCACAAAACGTTTGTCTTTTGATGCATATGTCTTTTGTGATTCCTGTGATGGGCTTGGCCACCCTAGCGATGCTGCCATGAGCATTTGTCCAACATGCAGGGGGGTTGGACGAGTAACTATTCCTCCTTTTACAGCATCATGCCAGACGTGCAAGGGGACGGGACACATTATTAAGGAATACTGCATGTCTTGTAGAGGATCAGGTATTGTGGAAGGCACAAAGACAGCTGAACTTGTGATCCCTGGAGGGGTGGAGTCTGAAGCTACAATCACAATCGTAGGTGCTGGTAATGTAAGTTCAAGAACAAGTCAACCTGGGAACTTGTATATCAAACTAAAGGTTGCTAATGATTCAACTTTCACTAGGGATGGCTCAGATATATATGTGGATGCTAATATTAGCTTTACACAAGCTATTTTGGGGGGCAAAGTTGTGGTGCCAACACTTTCAGGCAAGATACAGCTAGATATACCAAAGGGGACTCAGCCTGATCAACTTCTTGTTTTAAGAGGCAAAGGACTACCGAAGCAAGGCTTTTTTGTAGATCATGGAGATCAGTATGTTCGCTTCCGCGTTAACTTTCCTACTGAAGTGAATGAACGTCAGCGTGCTATACTGGAAGAGTTTGCAAAGGAAGAAATCAACAATGAGTTGAGCGACTCTGCTGAAGGAAGTTGGCTTTACCAGAAGCTCTCTACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

408

Amino Acids

45.68

Weight (kDa)

8.27

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	48 - 110	1.2e-24	DnaJ domain
DnaJ_C	PF01556	159 - 369	1.1e-40	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	186 - 242	1.4e-08	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28210 AT1G28210 AT1G28210
fragaria_vesca	FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030
malus_domestica	MD00G1135700.v1.1 MD00G1135800.v1.1 MD00G1136000.v1.1 MD15G1379600.v1.1
prunus_persica	Prupe.1G525700_v2.0.a1
pyrus_communis	pycom08g16440 pycom15g34020
rosa_chinensis	RchiOBHm_Chr7g0237761
rosa_laevigata	RLG00000000969
rosa_multiflora	Rmu_ssc0000067.1_g000032
rosa_roxburghii	Rroxscaffold_3G00223770
rosa_rugosa	Rorug07G0307900 Rorug07G0308000 Rorug07G0308100 Rorug07G0308200 Rorug07G0308300 Rorug07G0308400 Rorug07G0308500
rosa_samantha	Rh4BG131900 Rh5DG050200 Rh7AG463900 Rh7BG434000 Rh7CG480900 Rh7CG481100 Rh7DG449800
rosa_wichuraiana	Rw7G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	958
AccII	CGCG	2 cut(s)	59, 1095
AciI	CCGC	3 cut(s)	25, 57, 1093
AclI	AACGTT	1 cut(s)	529
AclWI	GGATC	2 cut(s)	727, 754
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	3 cut(s)	221, 304, 346
AcuI	CTGAAG	3 cut(s)	801, 1131, 1209
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	3 cut(s)	570, 769, 1052
AgsI	TTSAA	3 cut(s)	13, 822, 876
AjiI	CACGTC	2 cut(s)	395, 669
AjnI	CCWGG	4 cut(s)	270, 297, 763, 835
AloI	GAACNNNNNNTCC	2 cut(s)	744, 776
Alw21I	GWGCWC	2 cut(s)	139, 524
Alw26I	GTCTC	2 cut(s)	84, 287
Alw44I	GTGCAC	1 cut(s)	520
AlwI	GGATC	2 cut(s)	727, 754
AoxI	GGCC	1 cut(s)	577
ApaLI	GTGCAC	1 cut(s)	520
ApeKI	GCWGC	3 cut(s)	334, 509, 593
ApoI	RAATTY	3 cut(s)	221, 304, 346
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
Asp700I	GAANNNNTTC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	524
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	958
BarI	GAAGNNNNNNTAC	2 cut(s)	1073, 1105
Bbv12I	GWGCWC	2 cut(s)	139, 524
BbvI	GCAGC	3 cut(s)	321, 496, 580
BccI	CCATC	2 cut(s)	563, 884
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	4 cut(s)	272, 299, 765, 837
BciVI	GTATCC	1 cut(s)	412
BclI	TGATCA	1 cut(s)	1012
BcoDI	GTCTC	2 cut(s)	84, 287
BfaI	CTAG	3 cut(s)	585, 885, 986
BfmI	CTRYAG	3 cut(s)	114, 335, 510
BfuI	GTATCC	1 cut(s)	412
BisI	GCNGC	4 cut(s)	26, 335, 510, 594
BlsI	GCNGC	4 cut(s)	27, 336, 511, 595
Bme1390I	CCNGG	4 cut(s)	272, 299, 765, 837
BmgBI	CACGTC	2 cut(s)	395, 669
BmiI	GGNNCC	1 cut(s)	960
BmrFI	CCNGG	4 cut(s)	272, 299, 765, 837
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	4 cut(s)	532, 580, 665, 901
BmuI	ACTGGG	1 cut(s)	25
BpmI	CTGGAG	2 cut(s)	115, 786
BsaI	GGTCTC	2 cut(s)	84, 287
BsaJI	CCNNGG	4 cut(s)	297, 298, 763, 836
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	570, 769, 1052
Bse1I	ACTGG	5 cut(s)	20, 132, 403, 1143, 1225
BseBI	CCWGG	4 cut(s)	272, 299, 765, 837
BseDI	CCNNGG	4 cut(s)	297, 298, 763, 836
BseGI	GGATG	2 cut(s)	895, 916
BseLI	CCNNNNNNNGG	3 cut(s)	570, 769, 1052
BseMII	CTCAG	4 cut(s)	95, 432, 909, 1019
BseNI	ACTGG	5 cut(s)	20, 132, 403, 1143, 1225
BseRI	GAGGAG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	3 cut(s)	321, 496, 580
Bsh1236I	CGCG	2 cut(s)	59, 1095
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	958
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	2 cut(s)	139, 524
BslFI	GGGAC	3 cut(s)	691, 696, 1015
BslI	CCNNNNNNNGG	3 cut(s)	570, 769, 1052
BsmAI	GTCTC	2 cut(s)	84, 287
BsmFI	GGGAC	3 cut(s)	691, 696, 1015
BsnI	GGCC	1 cut(s)	579
Bso31I	GGTCTC	2 cut(s)	84, 287
Bsp1286I	GDGCHC	2 cut(s)	139, 524
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	6 cut(s)	60, 719, 759, 1012, 1066, 1075
BspACI	CCGC	3 cut(s)	25, 57, 1093
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	4 cut(s)	94, 433, 908, 1018
BspFNI	CGCG	2 cut(s)	59, 1095
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	960
BspMAI	CTGCAG	2 cut(s)	339, 514
BspPI	GGATC	2 cut(s)	727, 754
BspT107I	GGYRCC	1 cut(s)	958
BspTNI	GGTCTC	2 cut(s)	84, 287
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	5 cut(s)	20, 132, 403, 1143, 1225
BssECI	CCNNGG	4 cut(s)	297, 298, 763, 836
BssMI	GATC	6 cut(s)	60, 719, 759, 1012, 1066, 1075
Bst2UI	CCWGG	4 cut(s)	272, 299, 765, 837
Bst4CI	ACNGT	2 cut(s)	371, 489
Bst6I	CTCTTC	2 cut(s)	310, 1137
BstAUI	TGTACA	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	213, 1131
BstDEI	CTNAG	4 cut(s)	81, 441, 895, 1005
BstF5I	GGATG	2 cut(s)	895, 916
BstFNI	CGCG	2 cut(s)	59, 1095
BstKTI	GATC	6 cut(s)	63, 722, 762, 1015, 1069, 1078
BstMAI	GTCTC	2 cut(s)	84, 287
BstMBI	GATC	6 cut(s)	60, 719, 759, 1012, 1066, 1075
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	585, 669
BstNI	CCWGG	4 cut(s)	272, 299, 765, 837
BstNSI	RCATGY	3 cut(s)	32, 618, 709
BstSCI	CCNGG	4 cut(s)	270, 297, 763, 835
BstSFI	CTRYAG	3 cut(s)	114, 335, 510
BstSLI	GKGCMC	1 cut(s)	524
BstUI	CGCG	2 cut(s)	59, 1095
BstV1I	GCAGC	3 cut(s)	321, 496, 580
BsuI	GTATCC	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	579
BtgZI	GCGATG	1 cut(s)	603
BtrI	CACGTC	2 cut(s)	395, 669
BtsCI	GGATG	2 cut(s)	895, 916
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	213, 1131
CciI	TCATGA	1 cut(s)	205
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	7 cut(s)	29, 206, 598, 615, 660, 706, 1070
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	4 cut(s)	81, 441, 895, 1005
DpnI	GATC	6 cut(s)	62, 721, 761, 1014, 1068, 1077
DpnII	GATC	6 cut(s)	60, 719, 759, 1012, 1066, 1075
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	310, 1137
EarI	CTCTTC	2 cut(s)	310, 1137
Eco31I	GGTCTC	2 cut(s)	84, 287
Eco57I	CTGAAG	3 cut(s)	801, 1131, 1209
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	4 cut(s)	270, 297, 763, 835
EcoT22I	ATGCAT	1 cut(s)	547
FaeI	CATG	7 cut(s)	32, 209, 601, 618, 663, 709, 1073
FalI	AAGNNNNNCTT	2 cut(s)	1040, 1072
FaqI	GGGAC	3 cut(s)	691, 696, 1015
FatI	CATG	7 cut(s)	28, 205, 597, 614, 659, 705, 1069
FauNDI	CATATG	2 cut(s)	289, 547
FbaI	TGATCA	1 cut(s)	1012
Fnu4HI	GCNGC	4 cut(s)	26, 335, 510, 594
FokI	GGATG	2 cut(s)	902, 923
Fsp4HI	GCNGC	4 cut(s)	26, 335, 510, 594
FspBI	CTAG	3 cut(s)	585, 885, 986
GluI	GCNGC	4 cut(s)	26, 335, 510, 594
GsuI	CTGGAG	2 cut(s)	115, 786
HaeIII	GGCC	1 cut(s)	579
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	7 cut(s)	32, 209, 601, 618, 663, 709, 1073
HincII	GTYRAC	2 cut(s)	833, 1099
HindII	GTYRAC	2 cut(s)	833, 1099
HinfI	GANTC	8 cut(s)	9, 53, 377, 560, 776, 872, 1003, 1181
HpaI	GTTAAC	1 cut(s)	1099
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	3 cut(s)	522, 833, 1099
Hpy188III	TCNNGA	2 cut(s)	206, 822
Hpy8I	GTNNAC	3 cut(s)	522, 833, 1099
HpyAV	CCTTC	3 cut(s)	509, 728, 1184
HpyCH4III	ACNGT	2 cut(s)	371, 489
HpyCH4IV	ACGT	4 cut(s)	394, 529, 668, 1123
HpyCH4V	TGCA	9 cut(s)	337, 398, 512, 522, 545, 618, 672, 705, 1151
HpyF10VI	GCNNNNNNNGC	2 cut(s)	585, 669
HpyF3I	CTNAG	4 cut(s)	81, 441, 895, 1005
HpySE526I	ACGT	4 cut(s)	394, 529, 668, 1123
Hsp92II	CATG	7 cut(s)	32, 209, 601, 618, 663, 709, 1073
Ksp22I	TGATCA	1 cut(s)	1012
KspAI	GTTAAC	1 cut(s)	1099
Kzo9I	GATC	6 cut(s)	60, 719, 759, 1012, 1066, 1075
Lsp1109I	GCAGC	3 cut(s)	321, 496, 580
LweI	GCATC	4 cut(s)	532, 580, 665, 901
MaeI	CTAG	3 cut(s)	585, 885, 986
MaeII	ACGT	4 cut(s)	394, 529, 668, 1123
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	6 cut(s)	62, 721, 761, 1014, 1068, 1077
MboI	GATC	6 cut(s)	60, 719, 759, 1012, 1066, 1075
MboII	GAAGA	6 cut(s)	18, 54, 327, 332, 1154, 1169
MhlI	GDGCHC	2 cut(s)	139, 524
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	5 cut(s)	142, 221, 304, 346, 409
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	3 cut(s)	785, 997, 1175
MmeI	TCCRAC	2 cut(s)	607, 635
MnlI	CCTC	7 cut(s)	178, 277, 378, 654, 710, 761, 1025
Mox20I	TGGCCA	1 cut(s)	579
Mph1103I	ATGCAT	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	4 cut(s)	192, 693, 1028, 1098
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	749
MspR9I	CCNGG	4 cut(s)	272, 299, 765, 837
MvaI	CCWGG	4 cut(s)	272, 299, 765, 837
MvnI	CGCG	2 cut(s)	59, 1095
MwoI	GCNNNNNNNGC	2 cut(s)	585, 669
NdeI	CATATG	2 cut(s)	289, 547
NdeII	GATC	6 cut(s)	60, 719, 759, 1012, 1066, 1075
NlaIII	CATG	7 cut(s)	32, 209, 601, 618, 663, 709, 1073
NlaIV	GGNNCC	1 cut(s)	960
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	3 cut(s)	32, 618, 709
PagI	TCATGA	1 cut(s)	205
PasI	CCCWGGG	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	5 cut(s)	9, 53, 377, 560, 872
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	27, 336, 511, 595
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	3 cut(s)	784, 997, 1175
PpsI	GAGTC	3 cut(s)	784, 997, 1175
Psp1406I	AACGTT	1 cut(s)	529
Psp6I	CCWGG	4 cut(s)	270, 297, 763, 835
PspGI	CCWGG	4 cut(s)	270, 297, 763, 835
PspN4I	GGNNCC	1 cut(s)	960
PsrI	GAACNNNNNNTAC	2 cut(s)	802, 834
PstI	CTGCAG	2 cut(s)	339, 514
PvuI	CGATCG	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	4 cut(s)	192, 693, 1028, 1098
SatI	GCNGC	4 cut(s)	26, 335, 510, 594
Sau3AI	GATC	6 cut(s)	60, 719, 759, 1012, 1066, 1075
SchI	GAGTC	3 cut(s)	785, 997, 1175
ScrFI	CCNGG	4 cut(s)	272, 299, 765, 837
SduI	GDGCHC	2 cut(s)	139, 524
SfaNI	GCATC	4 cut(s)	532, 580, 665, 901
SfcI	CTRYAG	3 cut(s)	114, 335, 510
Sse9I	AATT	5 cut(s)	142, 221, 304, 346, 409
SsiI	CCGC	3 cut(s)	25, 57, 1093
SspI	AATATT	1 cut(s)	919
SspMI	CTAG	3 cut(s)	585, 885, 986
StyD4I	CCNGG	4 cut(s)	270, 297, 763, 835
TaaI	ACNGT	2 cut(s)	371, 489
TaiI	ACGT	4 cut(s)	397, 532, 671, 1126
TaqI	TCGA	2 cut(s)	40, 96
TasI	AATT	5 cut(s)	142, 221, 304, 346, 409
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	5 cut(s)	9, 53, 377, 560, 872
Tru1I	TTAA	4 cut(s)	192, 693, 1028, 1098
Tru9I	TTAA	4 cut(s)	192, 693, 1028, 1098
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	3 cut(s)	334, 509, 593
TspDTI	ATGAA	2 cut(s)	194, 1134
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	139
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	3 cut(s)	221, 304, 346
XceI	RCATGY	3 cut(s)	32, 618, 709
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	3 cut(s)	585, 885, 986
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.