FvH4_5g36030

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001890
Physical Location & Seq
Forward (+)
26382264 .. 26391555
9292 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36030.t7

Sequence Viewer

Length: 1443 bp
ATGTTCAAACTTCACCAAAACCCTAACATTATGCGGAAATTGAGCTTGCTTGGCCTGTGCCGGAGGAGCTTGGTTTCGCCGTTCGCCGGAGAATCTGCTATTGATCACGGCAGGCTTTGCTCAGCGAGCGAGGCATTGTATCGAACACAAGGTTTGAGCTCTTCTTCTGGTTCGGTAGCTGGCTTCGCTACTTCGTTTGGGAATCGTTACATCCATGCCTCAGGTTTTTGCTGCGCACCGGCACGAGACTATTATGAAACTCTCGGCGTTTCGAGAAGCGCAAGCAAAGATGAGATTAAAAAGGCGTTTCGCACGCTGGCCAAGAAATACCATCCTGATGCAAATAGGGACAATCCTTCTTATAAGAGAAAATTTCAGGAGATAAGAGAAGCTTATGAGACATTGCAAGATCCTGAAAAGAGGGCAGAATATGATATGAAGCAATCAAGTGGGTATGCTGCCAGTGATGCAGAAGGTTTTAGATACAGTTATCAAACTCATGGTCCTACAGCTGATGCGGAGGGGTTTGGACATGGTTTTAAACCTCATTTCTCCAGTTCATTTCATAAAATATTCTCAGAGATCTTTGAACGTGAGTTCGATCAAGTTGCACCTGACATTCAGGTGGAGCTGTCACTCTCTTTTTCTGAAGCTGCTAGAGGATGCACAAAAAATCTGTCTGTAACTTCACATGTTCCCTGCGATTCTTGTGATGGGCGTGGCTATCCAGTAAAGGCCAAGACAAAAGTGTGTCCTATTTGCAGAGGTATTGGGAGAGTTACAATTCCTCCATTCACATCAACATGCAGTACTTGCAAAGGGTCAGGCCAAATAATCAAGGAACATTGTATGTCATGTGGAGGATTAGGGATAGTTGAAGGTGCTAGAGAGGTTGAAGTTAGCATCCCAGCAGGTGTGGATTCTGGAGATACAATCCGCGTACCAGAGGCCGGGAATAGTGGGCCACGAGGAAGTCAACCAGGCTGGTTATATATTAAGCTAAAGGTTGCTAAAGATCCTATTTTTTCTAGAGATGGTGCAGATGTTTACGTGGACTCTAATATCAGCTTTACTCAAGCTATTCTTGGTGGTAAGGTTGAGGTGCCAACTTTAACTGGGAAGACAGAAGTAAAAATACCAAAGGGGGTTCAGCCTGGAGAACACATGGTACTAAGAGGCAAAGGACTACCGAAGCATGGTTTCCTAGTTCACCATGGAGACCAATATGTTCGCTTCCGAGTCCAGTTTCCAACTAAAATAAATGAACGACAACACGCCATATTAGAAGAATTTGCAAAGGAGGAAATAATTCATGGAAACAGCAACTCCAACGATAAAGACTGGTTTCAGCGGATAACTGAACGTGTTATGGGTCCGAGATTTGTGCTTGAGTTGTCGGTATTCTTATTGATCTTTTTTTTGCTGAGCAAAGCCACGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

481

Amino Acids

52.95

Weight (kDa)

8.82

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 63 - 273 4.8e-46 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 90 - 144 2.7e-08 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AarI CACCTGC 1 cut(s) 902
Acc16I TGCGCA 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 902
AccB1I GGYRCC 1 cut(s) 1102
AccII CGCG 1 cut(s) 939
AciI CCGC 4 cut(s) 34, 518, 937, 1351
AclWI GGATC 2 cut(s) 404, 1010
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 2 cut(s) 371, 1289
AcuI CTGAAG 1 cut(s) 669
AfaI GTAC 3 cut(s) 811, 942, 1170
AfiI CCNNNNNNNGG 3 cut(s) 86, 950, 1196
AflIII ACRYGT 2 cut(s) 691, 1363
AgsI TTSAA 4 cut(s) 7, 590, 878, 896
AjnI CCWGG 2 cut(s) 979, 1153
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 3 cut(s) 240, 392, 1212
AlwI GGATC 2 cut(s) 404, 1010
AoxI GGCC 6 cut(s) 52, 318, 735, 826, 948, 962
ApeKI GCWGC 3 cut(s) 231, 458, 653
ApoI RAATTY 2 cut(s) 371, 1289
ArsI GACNNNNNNTTYG 4 cut(s) 487, 519, 662, 694
Asp700I GAANNNNTTC 1 cut(s) 1308
AspLEI GCGC 2 cut(s) 236, 281
AspS9I GGNCC 3 cut(s) 503, 962, 1373
AsuC2I CCSGG 1 cut(s) 952
AsuHPI GGTGA 2 cut(s) 5, 1202
AvaII GGWCC 2 cut(s) 503, 1373
AxyI CCTNAGG 1 cut(s) 220
BalI TGGCCA 1 cut(s) 320
BanI GGYRCC 1 cut(s) 1102
BanII GRGCYC 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 1119, 1151
BauI CACGAG 3 cut(s) 243, 966, 1435
BbsI GAAGAC 1 cut(s) 1127
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 3 cut(s) 218, 445, 640
BccI CCATC 3 cut(s) 339, 707, 1028
BceAI ACGGC 2 cut(s) 64, 124
BcgI CGANNNNNNTGC 4 cut(s) 590, 624, 1366, 1400
BciT130I CCWGG 2 cut(s) 981, 1155
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 952
BcoDI GTCTC 3 cut(s) 240, 392, 1212
BfaI CTAG 4 cut(s) 657, 885, 1029, 1205
BfmI CTRYAG 1 cut(s) 507
BfuAI ACCTGC 1 cut(s) 902
BglII AGATCT 1 cut(s) 582
BisI GCNGC 3 cut(s) 232, 459, 654
BlpI GCTNAGC 2 cut(s) 121, 1424
BlsI GCNGC 3 cut(s) 233, 460, 655
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 3 cut(s) 952, 981, 1155
Bme18I GGWCC 2 cut(s) 503, 1373
BmgT120I GGNCC 3 cut(s) 503, 962, 1373
BmiI GGNNCC 2 cut(s) 1104, 1374
BmrFI CCNGG 3 cut(s) 952, 981, 1155
BmrI ACTGGG 1 cut(s) 1125
BmsI GCATC 5 cut(s) 328, 457, 505, 653, 912
BmuI ACTGGG 1 cut(s) 1125
BpiI GAAGAC 1 cut(s) 1127
BpmI CTGGAG 3 cut(s) 538, 945, 1176
Bpu1102I GCTNAGC 2 cut(s) 121, 1424
BpuEI CTTGAG 2 cut(s) 1059, 1409
BpuMI CCSGG 1 cut(s) 952
BsaAI YACGTR 1 cut(s) 1051
BsaI GGTCTC 1 cut(s) 1212
BsaJI CCNNGG 1 cut(s) 1213
BsaXI ACNNNNNCTCC 4 cut(s) 772, 802, 1310, 1340
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 950, 1196
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 6 cut(s) 462, 555, 728, 1120, 1243, 1346
Bse21I CCTNAGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 2 cut(s) 981, 1155
BseDI CCNNGG 1 cut(s) 1213
BseGI GGATG 4 cut(s) 210, 331, 668, 903
BseLI CCNNNNNNNGG 3 cut(s) 86, 950, 1196
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 4 cut(s) 135, 234, 591, 1415
BseNI ACTGG 6 cut(s) 462, 555, 728, 1120, 1243, 1346
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 3 cut(s) 218, 445, 640
BseYI CCCAGC 1 cut(s) 907
BsgI GTGCAG 1 cut(s) 1059
Bsh1236I CGCG 1 cut(s) 939
BshFI GGCC 6 cut(s) 54, 320, 737, 828, 950, 964
BshNI GGYRCC 1 cut(s) 1102
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 4 cut(s) 61, 87, 239, 951
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 3 cut(s) 86, 950, 1196
BsmAI GTCTC 3 cut(s) 240, 392, 1212
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 6 cut(s) 54, 320, 737, 828, 950, 964
Bso31I GGTCTC 1 cut(s) 1212
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 6 cut(s) 103, 409, 582, 601, 1015, 1410
Bsp1720I GCTNAGC 2 cut(s) 121, 1424
Bsp19I CCATGG 1 cut(s) 1213
BspACI CCGC 4 cut(s) 34, 518, 937, 1351
BspANI GGCC 6 cut(s) 54, 320, 737, 828, 950, 964
BspCNI CTCAG 4 cut(s) 134, 233, 590, 1416
BspFNI CGCG 1 cut(s) 939
BspLI GGNNCC 2 cut(s) 1104, 1374
BspMI ACCTGC 1 cut(s) 902
BspPI GGATC 2 cut(s) 404, 1010
BspQI GCTCTTC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 1102
BspTNI GGTCTC 1 cut(s) 1212
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 6 cut(s) 462, 555, 728, 1120, 1243, 1346
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 1213
BssMI GATC 6 cut(s) 103, 409, 582, 601, 1015, 1410
BssSI CACGAG 3 cut(s) 243, 966, 1435
BssT1I CCWWGG 1 cut(s) 1213
Bst2BI CACGAG 3 cut(s) 243, 966, 1435
Bst2UI CCWGG 2 cut(s) 981, 1155
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 1 cut(s) 166
BstAPI GCANNNNNTGC 2 cut(s) 117, 813
BstBAI YACGTR 1 cut(s) 1051
BstC8I GCNNGC 7 cut(s) 47, 113, 127, 181, 283, 314, 318
BstDEI CTNAG 5 cut(s) 121, 220, 577, 1172, 1424
BstDSI CCRYGG 1 cut(s) 1213
BstF5I GGATG 4 cut(s) 210, 331, 668, 903
BstFNI CGCG 1 cut(s) 939
BstHHI GCGC 2 cut(s) 236, 281
BstKTI GATC 6 cut(s) 106, 412, 585, 604, 1018, 1413
BstMAI GTCTC 3 cut(s) 240, 392, 1212
BstMBI GATC 6 cut(s) 103, 409, 582, 601, 1015, 1410
BstMWI GCNNNNNNNGC 8 cut(s) 51, 66, 117, 126, 131, 185, 467, 813
BstNI CCWGG 2 cut(s) 981, 1155
BstNSI RCATGY 2 cut(s) 695, 807
BstSCI CCNGG 3 cut(s) 950, 979, 1153
BstSFI CTRYAG 1 cut(s) 507
BstUI CGCG 1 cut(s) 939
BstV1I GCAGC 3 cut(s) 218, 445, 640
BstV2I GAAGAC 1 cut(s) 1127
BstX2I RGATCY 3 cut(s) 409, 582, 1015
BstYI RGATCY 3 cut(s) 409, 582, 1015
Bsu36I CCTNAGG 1 cut(s) 220
BsuRI GGCC 6 cut(s) 54, 320, 737, 828, 950, 964
BtgI CCRYGG 1 cut(s) 1213
BtsCI GGATG 4 cut(s) 210, 331, 668, 903
BtsIMutI CAGTG 1 cut(s) 469
BveI ACCTGC 1 cut(s) 902
Cac8I GCNNGC 7 cut(s) 47, 113, 127, 181, 283, 314, 318
CfoI GCGC 2 cut(s) 236, 281
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 3 cut(s) 503, 962, 1373
Csp6I GTAC 3 cut(s) 810, 941, 1169
CviQI GTAC 3 cut(s) 810, 941, 1169
DdeI CTNAG 5 cut(s) 121, 220, 577, 1172, 1424
DpnI GATC 6 cut(s) 105, 411, 584, 603, 1017, 1412
DpnII GATC 6 cut(s) 103, 409, 582, 601, 1015, 1410
DraI TTTAAA 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 1213
Eco24I GRGCYC 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 1212
Eco47I GGWCC 2 cut(s) 503, 1373
Eco53kI GAGCTC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 669
Eco81I CCTNAGG 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 979, 1153
EcoT14I CCWWGG 1 cut(s) 1213
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 1213
FalI AAGNNNNNCTT 4 cut(s) 376, 408, 1068, 1100
FaqI GGGAC 1 cut(s) 362
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 232, 459, 654
FokI GGATG 4 cut(s) 197, 318, 675, 890
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 232, 459, 654
FspBI CTAG 4 cut(s) 657, 885, 1029, 1205
FspI TGCGCA 1 cut(s) 235
GlaI GCGC 2 cut(s) 235, 280
GluI GCNGC 3 cut(s) 232, 459, 654
GsaI CCCAGC 1 cut(s) 911
GsuI CTGGAG 3 cut(s) 538, 945, 1176
HaeIII GGCC 6 cut(s) 54, 320, 737, 828, 950, 964
HapII CCGG 4 cut(s) 61, 87, 239, 951
HhaI GCGC 2 cut(s) 236, 281
Hin6I GCGC 2 cut(s) 234, 279
HinP1I GCGC 2 cut(s) 234, 279
HincII GTYRAC 1 cut(s) 977
HindII GTYRAC 1 cut(s) 977
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 6 cut(s) 92, 202, 704, 920, 1055, 1239
HpaII CCGG 4 cut(s) 61, 87, 239, 951
HphI GGTGA 2 cut(s) 5, 1202
Hpy166II GTNNAC 4 cut(s) 977, 1048, 1054, 1210
Hpy188I TCNGA 4 cut(s) 580, 649, 1238, 1377
Hpy188III TCNNGA 6 cut(s) 273, 335, 377, 413, 924, 1029
Hpy8I GTNNAC 4 cut(s) 977, 1048, 1054, 1210
HpyAV CCTTC 3 cut(s) 366, 467, 872
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 3 cut(s) 592, 1050, 1363
HpyF10VI GCNNNNNNNGC 8 cut(s) 51, 66, 117, 126, 131, 185, 467, 813
HpyF3I CTNAG 5 cut(s) 121, 220, 577, 1172, 1424
HpySE526I ACGT 3 cut(s) 592, 1050, 1363
HspAI GCGC 2 cut(s) 234, 279
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 6 cut(s) 103, 409, 582, 601, 1015, 1410
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 66, 628
Lsp1109I GCAGC 3 cut(s) 218, 445, 640
LweI GCATC 5 cut(s) 328, 457, 505, 653, 912
MaeI CTAG 4 cut(s) 657, 885, 1029, 1205
MaeII ACGT 3 cut(s) 592, 1050, 1363
MaeIII GTNAC 4 cut(s) 206, 633, 682, 778
MalI GATC 6 cut(s) 105, 411, 584, 603, 1017, 1412
MboI GATC 6 cut(s) 103, 409, 582, 601, 1015, 1410
MboII GAAGA 4 cut(s) 153, 156, 1132, 1298
MflI RGATCY 3 cut(s) 409, 582, 1015
MhlI GDGCHC 1 cut(s) 161
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 5 cut(s) 38, 371, 783, 1289, 1308
MluNI TGGCCA 1 cut(s) 320
MlyI GAGTC 2 cut(s) 1049, 1248
MmeI TCCRAC 2 cut(s) 1274, 1353
Mox20I TGGCCA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 1308
MscI TGGCCA 1 cut(s) 320
MseI TTAA 4 cut(s) 297, 540, 996, 1112
MslI CAYNNNNRTG 3 cut(s) 336, 623, 802
Msp20I TGGCCA 1 cut(s) 320
MspA1I CMGCKG 2 cut(s) 512, 1351
MspI CCGG 4 cut(s) 61, 87, 239, 951
MspR9I CCNGG 3 cut(s) 952, 981, 1155
MvaI CCWGG 2 cut(s) 981, 1155
MvnI CGCG 1 cut(s) 939
MwoI GCNNNNNNNGC 8 cut(s) 51, 66, 117, 126, 131, 185, 467, 813
NciI CCSGG 1 cut(s) 952
NcoI CCATGG 1 cut(s) 1213
NdeII GATC 6 cut(s) 103, 409, 582, 601, 1015, 1410
NlaIV GGNNCC 2 cut(s) 1104, 1374
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 633
NsbI TGCGCA 1 cut(s) 235
NspI RCATGY 2 cut(s) 695, 807
PaqCI CACCTGC 1 cut(s) 902
PciI ACATGT 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 1308
PfeI GAWTC 4 cut(s) 92, 202, 704, 920
PkrI GCNGC 3 cut(s) 233, 460, 655
PleI GAGTC 2 cut(s) 1049, 1247
PpsI GAGTC 2 cut(s) 1049, 1247
Ppu21I YACGTR 1 cut(s) 1051
PscI ACATGT 1 cut(s) 691
PsiI TTATAA 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 161
Psp6I CCWGG 2 cut(s) 979, 1153
PspFI CCCAGC 1 cut(s) 907
PspGI CCWGG 2 cut(s) 979, 1153
PspN4I GGNNCC 2 cut(s) 1104, 1374
PspPI GGNCC 3 cut(s) 503, 962, 1373
PsrI GAACNNNNNNTAC 2 cut(s) 1152, 1184
PsuI RGATCY 3 cut(s) 409, 582, 1015
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 3 cut(s) 811, 942, 1170
RsaNI GTAC 3 cut(s) 810, 941, 1169
RseI CAYNNNNRTG 3 cut(s) 336, 623, 802
SacI GAGCTC 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 4 cut(s) 297, 540, 996, 1112
SatI GCNGC 3 cut(s) 232, 459, 654
Sau3AI GATC 6 cut(s) 103, 409, 582, 601, 1015, 1410
Sau96I GGNCC 3 cut(s) 503, 962, 1373
ScaI AGTACT 1 cut(s) 811
SchI GAGTC 2 cut(s) 1049, 1248
ScrFI CCNGG 3 cut(s) 952, 981, 1155
SduI GDGCHC 1 cut(s) 161
SfaNI GCATC 5 cut(s) 328, 457, 505, 653, 912
SfcI CTRYAG 1 cut(s) 507
SinI GGWCC 2 cut(s) 503, 1373
SmiMI CAYNNNNRTG 3 cut(s) 336, 623, 802
SmlI CTYRAG 2 cut(s) 1074, 1388
SmoI CTYRAG 2 cut(s) 1074, 1388
Sse9I AATT 5 cut(s) 38, 371, 783, 1289, 1308
SsiI CCGC 4 cut(s) 34, 518, 937, 1351
SspI AATATT 1 cut(s) 573
SspMI CTAG 4 cut(s) 657, 885, 1029, 1205
SstI GAGCTC 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 950, 979, 1153
StyI CCWWGG 1 cut(s) 1213
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 3 cut(s) 595, 1053, 1366
TaqI TCGA 3 cut(s) 142, 272, 600
TasI AATT 5 cut(s) 38, 371, 783, 1289, 1308
TatI WGTACW 1 cut(s) 809
TfiI GAWTC 4 cut(s) 92, 202, 704, 920
Tru1I TTAA 4 cut(s) 297, 540, 996, 1112
Tru9I TTAA 4 cut(s) 297, 540, 996, 1112
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 633
TseI GCWGC 3 cut(s) 231, 458, 653
Tsp45I GTSAC 1 cut(s) 633
TspDTI ATGAA 6 cut(s) 270, 452, 549, 554, 1278, 1301
TspRI CASTG 1 cut(s) 469
VpaK11BI GGWCC 2 cut(s) 503, 1373
XapI RAATTY 2 cut(s) 371, 1289
XbaI TCTAGA 1 cut(s) 1028
XceI RCATGY 2 cut(s) 695, 807
XmnI GAANNNNTTC 1 cut(s) 1308
XspI CTAG 4 cut(s) 657, 885, 1029, 1205
ZrmI AGTACT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.