Rh5DG050200

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001890
Physical Location & Seq
Forward (+)
4223946 .. 4225296
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG050200.1

Sequence Viewer

Length: 363 bp
ATGGGTTCGATTTTGAATGGTGGTCTTAATGTTGGGGCCTTGGGGACATTGCAAGATCCTGAAAAGAGGGCAGAATATGACATGAAGCAATCAAGTGGGTATACTGCTGGTGATGCAGAAGGTTTTAGATATAATTATCAAACACATGGTTCTACTGCTGATGCAGAGGGGTTTGGACATGTTGGAATCTCCAATCTTCATTATTCTGAAAGTTGTTTGATACTGCAAATCTTTGAACATGAATTTGATCAAGTTGCACCTGACATTCAGGTGGAGCTGTCTCTCTCTTTTTCTGAAGCTGCTAGAGGATGCACAAAGAATCTGTCTGTCACTGCACATGTTCCCTGCGATTCTTGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

120

Amino Acids

12.83

Weight (kDa)

4.62

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 101
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 315
AflIII ACRYGT 2 cut(s) 178, 337
AgsI TTSAA 2 cut(s) 16, 236
AluBI AGCT 2 cut(s) 277, 299
AluI AGCT 2 cut(s) 277, 299
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 122
BbvI GCAGC 1 cut(s) 286
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 1 cut(s) 303
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 3 cut(s) 103, 151, 299
BsaJI CCNNGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 38
BslFI GGGAC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 2 cut(s) 55, 247
BspANI GGCC 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 2 cut(s) 55, 247
BssNAI GTATAC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 39
Bst1107I GTATAC 1 cut(s) 102
BstF5I GGATG 1 cut(s) 314
BstKTI GATC 2 cut(s) 58, 250
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 55, 247
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 2 cut(s) 182, 341
BstV1I GCAGC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 314
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 36
CviAII CATG 5 cut(s) 82, 146, 179, 239, 338
CviJI RGCY 3 cut(s) 38, 277, 299
CviKI_1 RGCY 3 cut(s) 38, 277, 299
DpnI GATC 2 cut(s) 57, 249
DpnII GATC 2 cut(s) 55, 247
Eco130I CCWWGG 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 5 cut(s) 85, 149, 182, 242, 341
FaiI YATR 8 cut(s) 78, 83, 102, 132, 147, 180, 240, 339
FaqI GGGAC 1 cut(s) 58
FatI CATG 5 cut(s) 81, 145, 178, 238, 337
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 1 cut(s) 303
GluI GCNGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 38
Hin1II CATG 5 cut(s) 85, 149, 182, 242, 341
HinfI GANTC 3 cut(s) 186, 319, 350
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 208, 295
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 7 cut(s) 52, 116, 164, 226, 257, 312, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 5 cut(s) 85, 149, 182, 242, 341
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 55, 247
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 5 cut(s) 72, 93, 254, 273, 358
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 3 cut(s) 103, 151, 299
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 328
MalI GATC 2 cut(s) 57, 249
MboI GATC 2 cut(s) 55, 247
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 55
MluCI AATT 2 cut(s) 133, 242
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 3 cut(s) 60, 160, 299
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 2 cut(s) 55, 247
NlaIII CATG 5 cut(s) 85, 149, 182, 242, 341
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 2 cut(s) 182, 341
PciI ACATGT 2 cut(s) 178, 337
PfeI GAWTC 3 cut(s) 186, 319, 350
PkrI GCNGC 1 cut(s) 301
PscI ACATGT 2 cut(s) 178, 337
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 2 cut(s) 55, 247
Sau96I GGNCC 1 cut(s) 36
SetI ASST 5 cut(s) 124, 262, 273, 279, 301
SfaNI GCATC 3 cut(s) 103, 151, 299
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 2 cut(s) 133, 242
SspMI CTAG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 1 cut(s) 8
TasI AATT 2 cut(s) 133, 242
TfiI GAWTC 3 cut(s) 186, 319, 350
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 3 cut(s) 98, 188, 255
TspRI CASTG 1 cut(s) 337
XapI RAATTY 1 cut(s) 242
XceI RCATGY 2 cut(s) 182, 341
XmiI GTMKAC 1 cut(s) 101
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.