Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001890

Physical Location & Seq

Genomic Coordinates Reverse (-)

30959633 .. 30963599

Gene Structure 3967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0308100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGGCTCTTGGTTCATGCACTTGGCTTCACCCTCTCTGCTTCTTCTTCACTGCTCTTCTCCTCAAATGACAACCTCCGAATTCCGCCAATCTCACACTCCAACCTACGATTTGCAGGTCATCAATTCAATTTCAGGGAAAAGCATCGTAAGGCTAGAATTGCAACCTCCAGCTTCACTTGTTTCTCTGCCCAGGAAGATAAACCGGAGTCTGTAACAGTGAAAGAGAAAAGCGTGTCAGTGATTCTTTTGGCTGGGGGGAAGGGTAAAAGGATGGGTGCCAGTATGCCGAAACAGTATCTCCCGCTTTTAAGCCAGCCTATTGCATTGTACAGCTTCTATACTTTCTCACGCATGCCTCAAGTGAAGGAAATCATTGTAGTTTGTGATCCCTCCTACAGGGATGTTTTTGAAGACTCCAAGCATAAGATCCACACGGAACTTAAATTCACGTTGCCTGGGAAGGAAAGACAAGATTCTGTTTACAGTGGACTCCAGGCTATTGATTTGACCTCTGAGCTTGTTTGCATCCATGACTCTGCAAGACCTCTGGTATCGTCAGGAGATGTTGAGAAGGTTCTTAAAGATGGTTGGTTAAATGGAGCAGCTGTACTTGGGGTTCCAGTAAAAGCGACCATCAAAGAGGCAAACTATGAGTCTTTTGTAGTCCGAACTCTGGACAGGAGAACACTCTGGGAAATGCAGACACCACAGGTCATCAAACCTGAGTTGCTCAAAAAGGGCTTTGAACTTGTTAACAGAGAAGGCCTTGAAGTTACTGATGACGTGTCTATTGTTGAGCACCTTCCACATCCTGTGTACATCACTGAAGGATCTTACACCAACATCAAGGTCACAACGCCAGATGATTTATTACTCGCAGAAAGAATATTGAGTATGAACACTAAAAAGTCTTCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

307

Amino Acids

34.22

Weight (kDa)

8.6

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IspD	PF01128	79 - 299	1.8e-55	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transf_3	PF12804	81 - 194	2e-08	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28210 AT1G28210 AT1G28210
fragaria_vesca	FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030 FvH4_5g36030
malus_domestica	MD00G1135700.v1.1 MD00G1135800.v1.1 MD00G1136000.v1.1 MD15G1379600.v1.1
prunus_persica	Prupe.1G525700_v2.0.a1
pyrus_communis	pycom08g16440 pycom15g34020
rosa_chinensis	RchiOBHm_Chr7g0237761
rosa_laevigata	RLG00000000969
rosa_multiflora	Rmu_ssc0000067.1_g000032
rosa_roxburghii	Rroxscaffold_3G00223770
rosa_rugosa	Rorug07G0307900 Rorug07G0308000 Rorug07G0308100 Rorug07G0308200 Rorug07G0308300 Rorug07G0308400 Rorug07G0308500
rosa_samantha	Rh4BG131900 Rh5DG050200 Rh7AG463900 Rh7BG434000 Rh7CG480900 Rh7CG481100 Rh7DG449800
rosa_wichuraiana	Rw7G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	2 cut(s)	86, 305
AclWI	GGATC	3 cut(s)	383, 424, 841
AcsI	RAATTY	2 cut(s)	81, 446
AcuI	CTGAAG	2 cut(s)	849, 900
AfaI	GTAC	3 cut(s)	332, 612, 821
AfiI	CCNNNNNNNGG	2 cut(s)	399, 676
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	4 cut(s)	130, 413, 749, 773
AjiI	CACGTC	1 cut(s)	787
AjnI	CCWGG	3 cut(s)	192, 457, 495
AluBI	AGCT	4 cut(s)	174, 336, 520, 608
AluI	AGCT	4 cut(s)	174, 336, 520, 608
Alw21I	GWGCWC	1 cut(s)	804
AlwI	GGATC	3 cut(s)	383, 424, 841
AoxI	GGCC	1 cut(s)	766
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	2 cut(s)	81, 446
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
AsuHPI	GGTGA	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	420, 906
Bbv12I	GWGCWC	1 cut(s)	804
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	3 cut(s)	268, 581, 644
BciT130I	CCWGG	3 cut(s)	194, 459, 497
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	3 cut(s)	194, 459, 497
BmgBI	CACGTC	1 cut(s)	787
BmiI	GGNNCC	2 cut(s)	280, 621
BmrFI	CCNGG	3 cut(s)	194, 459, 497
BmsI	GCATC	2 cut(s)	154, 537
BpiI	GAAGAC	2 cut(s)	420, 906
BpmI	CTGGAG	2 cut(s)	154, 479
BpuEI	CTTGAG	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	192, 458
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	4 cut(s)	285, 315, 594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 676
Bse1I	ACTGG	2 cut(s)	282, 623
BseBI	CCWGG	3 cut(s)	194, 459, 497
BseDI	CCNNGG	2 cut(s)	192, 458
BseGI	GGATG	4 cut(s)	279, 409, 528, 811
BseLI	CCNNNNNNNGG	2 cut(s)	399, 676
BseMII	CTCAG	2 cut(s)	507, 717
BseNI	ACTGG	2 cut(s)	282, 623
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	617
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	1 cut(s)	768
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	804
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	399, 676
BsnI	GGCC	1 cut(s)	768
Bsp1286I	GDGCHC	2 cut(s)	9, 804
Bsp1407I	TGTACA	2 cut(s)	330, 819
Bsp143I	GATC	3 cut(s)	388, 429, 833
BspACI	CCGC	2 cut(s)	86, 305
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	2 cut(s)	508, 718
BspLI	GGNNCC	2 cut(s)	280, 621
BspMI	ACCTGC	1 cut(s)	107
BspPI	GGATC	3 cut(s)	383, 424, 841
BspQI	GCTCTTC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	278
BsrGI	TGTACA	2 cut(s)	330, 819
BsrI	ACTGG	2 cut(s)	282, 623
BssECI	CCNNGG	2 cut(s)	192, 458
BssMI	GATC	3 cut(s)	388, 429, 833
Bst2UI	CCWGG	3 cut(s)	194, 459, 497
Bst4CI	ACNGT	3 cut(s)	220, 297, 488
Bst6I	CTCTTC	1 cut(s)	62
BstAUI	TGTACA	2 cut(s)	330, 819
BstC8I	GCNNGC	2 cut(s)	317, 356
BstDEI	CTNAG	2 cut(s)	516, 726
BstENI	CCTNNNNNAGG	1 cut(s)	397
BstF5I	GGATG	4 cut(s)	279, 409, 528, 811
BstKTI	GATC	3 cut(s)	391, 432, 836
BstMBI	GATC	3 cut(s)	388, 429, 833
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	3 cut(s)	194, 459, 497
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	3 cut(s)	192, 457, 495
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	617
BstV2I	GAAGAC	2 cut(s)	420, 906
BstX2I	RGATCY	2 cut(s)	429, 833
BstYI	RGATCY	2 cut(s)	429, 833
BsuRI	GGCC	1 cut(s)	768
BtrI	CACGTC	1 cut(s)	787
BtsCI	GGATG	4 cut(s)	279, 409, 528, 811
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	5 cut(s)	50, 225, 246, 493, 825
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	317, 356
Csp6I	GTAC	3 cut(s)	331, 611, 820
CviAII	CATG	3 cut(s)	17, 355, 533
CviQI	GTAC	3 cut(s)	331, 611, 820
DdeI	CTNAG	2 cut(s)	516, 726
DpnI	GATC	3 cut(s)	390, 431, 835
DpnII	GATC	3 cut(s)	388, 429, 833
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	768
Eco24I	GRGCYC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	849, 900
EcoNI	CCTNNNNNAGG	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	3 cut(s)	192, 457, 495
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	3 cut(s)	20, 358, 536
FaiI	YATR	8 cut(s)	18, 287, 342, 356, 426, 534, 654, 899
FatI	CATG	3 cut(s)	16, 354, 532
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	4 cut(s)	286, 416, 515, 798
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	606
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	2 cut(s)	154, 479
HaeIII	GGCC	1 cut(s)	768
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	3 cut(s)	20, 358, 536
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	7 cut(s)	209, 244, 416, 476, 492, 536, 656
HpaI	GTTAAC	1 cut(s)	757
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	4 cut(s)	484, 491, 757, 820
Hpy188I	TCNGA	3 cut(s)	80, 517, 671
Hpy188III	TCNNGA	3 cut(s)	561, 677, 918
Hpy8I	GTNNAC	4 cut(s)	484, 491, 757, 820
HpyAV	CCTTC	7 cut(s)	256, 361, 457, 568, 758, 815, 824
HpyCH4III	ACNGT	3 cut(s)	220, 297, 488
HpyCH4IV	ACGT	2 cut(s)	452, 786
HpyCH4V	TGCA	7 cut(s)	20, 116, 164, 326, 528, 542, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	516, 726
HpySE526I	ACGT	2 cut(s)	452, 786
Hsp92II	CATG	3 cut(s)	20, 358, 536
KspAI	GTTAAC	1 cut(s)	757
Kzo9I	GATC	3 cut(s)	388, 429, 833
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	602
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	154, 537
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	452, 786
MaeIII	GTNAC	3 cut(s)	214, 775, 853
MalI	GATC	3 cut(s)	390, 431, 835
MboI	GATC	3 cut(s)	388, 429, 833
MboII	GAAGA	6 cut(s)	36, 39, 49, 209, 425, 906
MflI	RGATCY	2 cut(s)	429, 833
MhlI	GDGCHC	2 cut(s)	9, 804
MluCI	AATT	5 cut(s)	81, 125, 130, 159, 446
MlyI	GAGTC	5 cut(s)	218, 410, 486, 530, 665
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	9 cut(s)	44, 73, 86, 178, 369, 403, 523, 558, 637
MseI	TTAA	5 cut(s)	311, 444, 582, 596, 756
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	3 cut(s)	194, 459, 497
MvaI	CCWGG	3 cut(s)	194, 459, 497
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	3 cut(s)	388, 429, 833
NlaIII	CATG	3 cut(s)	20, 358, 536
NlaIV	GGNNCC	2 cut(s)	280, 621
NmuCI	GTSAC	1 cut(s)	853
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	768
PciSI	GCTCTTC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	244, 476
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	5 cut(s)	217, 410, 486, 530, 664
PpsI	GAGTC	5 cut(s)	217, 410, 486, 530, 664
Psp6I	CCWGG	3 cut(s)	192, 457, 495
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	3 cut(s)	192, 457, 495
PspN4I	GGNNCC	2 cut(s)	280, 621
PsrI	GAACNNNNNNTAC	2 cut(s)	603, 635
PsuI	RGATCY	2 cut(s)	429, 833
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	3 cut(s)	332, 612, 821
RsaNI	GTAC	3 cut(s)	331, 611, 820
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	5 cut(s)	311, 444, 582, 596, 756
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	3 cut(s)	388, 429, 833
SchI	GAGTC	5 cut(s)	218, 410, 486, 530, 665
ScrFI	CCNGG	3 cut(s)	194, 459, 497
SduI	GDGCHC	2 cut(s)	9, 804
SfaNI	GCATC	2 cut(s)	154, 537
SfcI	CTRYAG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	5 cut(s)	81, 125, 130, 159, 446
SseBI	AGGCCT	1 cut(s)	768
SsiI	CCGC	2 cut(s)	86, 305
SspI	AATATT	1 cut(s)	891
SspMI	CTAG	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	768
StyD4I	CCNGG	3 cut(s)	192, 457, 495
TaaI	ACNGT	3 cut(s)	220, 297, 488
TaiI	ACGT	2 cut(s)	455, 789
TasI	AATT	5 cut(s)	81, 125, 130, 159, 446
TatI	WGTACW	3 cut(s)	330, 610, 819
TfiI	GAWTC	2 cut(s)	244, 476
Tru1I	TTAA	5 cut(s)	311, 444, 582, 596, 756
Tru9I	TTAA	5 cut(s)	311, 444, 582, 596, 756
TscAI	CASTG	5 cut(s)	57, 225, 246, 493, 832
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	2 cut(s)	5, 914
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	5 cut(s)	57, 225, 246, 493, 832
XagI	CCTNNNNNAGG	1 cut(s)	397
XapI	RAATTY	2 cut(s)	81, 446
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.